Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0116

Experiment: m.b. Nickel (II) chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0115 and Echvi_0116 are separated by 94 nucleotidesEchvi_0116 and Echvi_0117 are separated by 200 nucleotides Echvi_0115: Echvi_0115 - hypothetical protein, at 110,035 to 112,797 _0115 Echvi_0116: Echvi_0116 - Arginine deiminase, at 112,892 to 114,109 _0116 Echvi_0117: Echvi_0117 - Predicted metalloendopeptidase, at 114,310 to 116,370 _0117 Position (kb) 112 113 114 115Strain fitness (log2 ratio) -2 -1 0 1 2at 112.792 kb on + strandat 112.795 kb on + strandat 112.809 kb on - strandat 112.809 kb on - strandat 112.893 kb on + strandat 112.924 kb on + strandat 112.924 kb on + strandat 112.925 kb on - strandat 113.061 kb on - strand, within Echvi_0116at 113.097 kb on + strand, within Echvi_0116at 113.105 kb on - strand, within Echvi_0116at 113.139 kb on + strand, within Echvi_0116at 113.218 kb on + strand, within Echvi_0116at 113.230 kb on + strand, within Echvi_0116at 113.230 kb on + strand, within Echvi_0116at 113.231 kb on - strand, within Echvi_0116at 113.232 kb on + strand, within Echvi_0116at 113.232 kb on + strand, within Echvi_0116at 113.232 kb on + strand, within Echvi_0116at 113.232 kb on + strand, within Echvi_0116at 113.232 kb on + strand, within Echvi_0116at 113.233 kb on - strand, within Echvi_0116at 113.233 kb on - strand, within Echvi_0116at 113.234 kb on + strand, within Echvi_0116at 113.234 kb on + strand, within Echvi_0116at 113.234 kb on + strand, within Echvi_0116at 113.234 kb on + strand, within Echvi_0116at 113.234 kb on + strand, within Echvi_0116at 113.234 kb on + strand, within Echvi_0116at 113.234 kb on + strandat 113.234 kb on + strand, within Echvi_0116at 113.234 kb on + strand, within Echvi_0116at 113.234 kb on + strand, within Echvi_0116at 113.234 kb on + strand, within Echvi_0116at 113.234 kb on + strand, within Echvi_0116at 113.234 kb on + strand, within Echvi_0116at 113.235 kb on - strand, within Echvi_0116at 113.235 kb on - strand, within Echvi_0116at 113.235 kb on - strand, within Echvi_0116at 113.235 kb on - strand, within Echvi_0116at 113.235 kb on - strand, within Echvi_0116at 113.235 kb on - strand, within Echvi_0116at 113.235 kb on - strand, within Echvi_0116at 113.235 kb on - strand, within Echvi_0116at 113.235 kb on - strand, within Echvi_0116at 113.235 kb on - strand, within Echvi_0116at 113.271 kb on + strand, within Echvi_0116at 113.295 kb on - strand, within Echvi_0116at 113.295 kb on - strand, within Echvi_0116at 113.329 kb on + strand, within Echvi_0116at 113.330 kb on - strand, within Echvi_0116at 113.355 kb on + strand, within Echvi_0116at 113.403 kb on + strandat 113.404 kb on - strand, within Echvi_0116at 113.564 kb on - strand, within Echvi_0116at 113.564 kb on - strand, within Echvi_0116at 113.608 kb on + strand, within Echvi_0116at 113.807 kb on - strand, within Echvi_0116at 113.913 kb on + strand, within Echvi_0116at 113.914 kb on - strand, within Echvi_0116at 113.950 kb on + strand, within Echvi_0116at 113.956 kb on - strand, within Echvi_0116at 114.022 kb on - strandat 114.022 kb on - strandat 114.022 kb on - strandat 114.022 kb on - strandat 114.118 kb on - strandat 114.238 kb on + strandat 114.256 kb on + strandat 114.328 kb on - strandat 114.380 kb on + strandat 114.381 kb on - strandat 114.381 kb on - strandat 114.397 kb on + strandat 114.541 kb on - strand, within Echvi_0117at 114.671 kb on + strand, within Echvi_0117at 114.671 kb on + strand, within Echvi_0117at 114.833 kb on + strand, within Echvi_0117at 114.833 kb on + strand, within Echvi_0117at 114.834 kb on - strand, within Echvi_0117at 114.855 kb on + strand, within Echvi_0117at 114.855 kb on + strand, within Echvi_0117at 114.855 kb on + strand, within Echvi_0117at 114.856 kb on - strand, within Echvi_0117at 114.856 kb on - strand, within Echvi_0117at 114.856 kb on - strand, within Echvi_0117at 114.857 kb on + strand, within Echvi_0117at 114.857 kb on + strand, within Echvi_0117at 114.857 kb on + strand, within Echvi_0117at 114.858 kb on - strand, within Echvi_0117at 114.858 kb on - strand, within Echvi_0117at 114.858 kb on - strand, within Echvi_0117at 114.912 kb on + strand, within Echvi_0117at 114.918 kb on + strand, within Echvi_0117at 114.918 kb on + strand, within Echvi_0117at 114.920 kb on + strand, within Echvi_0117at 114.920 kb on + strand, within Echvi_0117at 114.921 kb on - strand, within Echvi_0117at 114.921 kb on - strand, within Echvi_0117at 114.949 kb on - strand, within Echvi_0117at 115.038 kb on - strand, within Echvi_0117at 115.079 kb on + strand, within Echvi_0117

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 2 mM
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112,792 + +0.9
112,795 + +1.1
112,809 - +0.0
112,809 - +0.6
112,893 + +1.1
112,924 + +1.6
112,924 + +0.1
112,925 - +1.5
113,061 - Echvi_0116 0.14 -1.8
113,097 + Echvi_0116 0.17 +0.5
113,105 - Echvi_0116 0.17 +2.5
113,139 + Echvi_0116 0.20 +1.7
113,218 + Echvi_0116 0.27 -0.2
113,230 + Echvi_0116 0.28 -1.2
113,230 + Echvi_0116 0.28 +1.0
113,231 - Echvi_0116 0.28 +0.1
113,232 + Echvi_0116 0.28 -0.2
113,232 + Echvi_0116 0.28 -1.9
113,232 + Echvi_0116 0.28 +0.6
113,232 + Echvi_0116 0.28 -0.1
113,232 + Echvi_0116 0.28 +0.7
113,233 - Echvi_0116 0.28 -0.9
113,233 - Echvi_0116 0.28 +0.8
113,234 + Echvi_0116 0.28 -0.1
113,234 + Echvi_0116 0.28 +1.0
113,234 + Echvi_0116 0.28 +1.8
113,234 + Echvi_0116 0.28 +1.1
113,234 + Echvi_0116 0.28 -1.1
113,234 + Echvi_0116 0.28 +1.0
113,234 + +0.5
113,234 + Echvi_0116 0.28 +0.0
113,234 + Echvi_0116 0.28 -0.1
113,234 + Echvi_0116 0.28 +0.1
113,234 + Echvi_0116 0.28 -0.3
113,234 + Echvi_0116 0.28 +0.7
113,234 + Echvi_0116 0.28 +0.1
113,235 - Echvi_0116 0.28 +1.0
113,235 - Echvi_0116 0.28 +1.0
113,235 - Echvi_0116 0.28 +0.6
113,235 - Echvi_0116 0.28 +0.5
113,235 - Echvi_0116 0.28 -0.2
113,235 - Echvi_0116 0.28 +0.2
113,235 - Echvi_0116 0.28 +0.1
113,235 - Echvi_0116 0.28 -1.4
113,235 - Echvi_0116 0.28 +1.3
113,235 - Echvi_0116 0.28 +0.9
113,271 + Echvi_0116 0.31 -0.4
113,295 - Echvi_0116 0.33 +0.9
113,295 - Echvi_0116 0.33 +0.7
113,329 + Echvi_0116 0.36 +0.5
113,330 - Echvi_0116 0.36 -0.3
113,355 + Echvi_0116 0.38 -0.1
113,403 + +1.5
113,404 - Echvi_0116 0.42 +1.6
113,564 - Echvi_0116 0.55 -0.0
113,564 - Echvi_0116 0.55 +0.3
113,608 + Echvi_0116 0.59 +0.1
113,807 - Echvi_0116 0.75 -0.2
113,913 + Echvi_0116 0.84 +0.4
113,914 - Echvi_0116 0.84 +0.1
113,950 + Echvi_0116 0.87 +0.5
113,956 - Echvi_0116 0.87 +0.4
114,022 - +0.6
114,022 - -0.8
114,022 - +0.2
114,022 - +0.1
114,118 - +0.3
114,238 + +0.9
114,256 + -0.3
114,328 - +0.3
114,380 + +0.7
114,381 - +0.6
114,381 - +0.6
114,397 + +0.9
114,541 - Echvi_0117 0.11 -0.4
114,671 + Echvi_0117 0.18 +0.3
114,671 + Echvi_0117 0.18 +1.1
114,833 + Echvi_0117 0.25 +0.6
114,833 + Echvi_0117 0.25 -0.7
114,834 - Echvi_0117 0.25 -0.1
114,855 + Echvi_0117 0.26 +0.1
114,855 + Echvi_0117 0.26 +0.2
114,855 + Echvi_0117 0.26 -0.6
114,856 - Echvi_0117 0.26 +0.4
114,856 - Echvi_0117 0.26 -0.9
114,856 - Echvi_0117 0.26 +0.2
114,857 + Echvi_0117 0.27 +0.4
114,857 + Echvi_0117 0.27 -0.9
114,857 + Echvi_0117 0.27 +0.5
114,858 - Echvi_0117 0.27 +0.1
114,858 - Echvi_0117 0.27 -2.2
114,858 - Echvi_0117 0.27 +1.5
114,912 + Echvi_0117 0.29 -2.3
114,918 + Echvi_0117 0.30 -1.2
114,918 + Echvi_0117 0.30 +0.4
114,920 + Echvi_0117 0.30 -1.9
114,920 + Echvi_0117 0.30 -0.5
114,921 - Echvi_0117 0.30 -0.3
114,921 - Echvi_0117 0.30 +1.2
114,949 - Echvi_0117 0.31 +0.5
115,038 - Echvi_0117 0.35 +0.7
115,079 + Echvi_0117 0.37 +0.9

Or see this region's nucleotide sequence