Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0100

Experiment: m.b. Nickel (II) chloride 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0099 and Echvi_0100 are separated by 62 nucleotidesEchvi_0100 and Echvi_0101 are separated by 11 nucleotidesEchvi_0101 and Echvi_0102 are separated by 35 nucleotides Echvi_0099: Echvi_0099 - hypothetical protein, at 97,949 to 99,133 _0099 Echvi_0100: Echvi_0100 - NAD dependent epimerase/dehydratase family., at 99,196 to 99,915 _0100 Echvi_0101: Echvi_0101 - hypothetical protein, at 99,927 to 100,538 _0101 Echvi_0102: Echvi_0102 - Uncharacterized conserved protein, at 100,574 to 101,005 _0102 Position (kb) 99 100Strain fitness (log2 ratio) -2 -1 0 1 2at 98.374 kb on - strand, within Echvi_0099at 98.374 kb on - strand, within Echvi_0099at 98.387 kb on + strand, within Echvi_0099at 98.411 kb on + strand, within Echvi_0099at 98.412 kb on - strand, within Echvi_0099at 98.496 kb on + strand, within Echvi_0099at 98.536 kb on + strand, within Echvi_0099at 98.580 kb on + strand, within Echvi_0099at 98.580 kb on + strand, within Echvi_0099at 98.664 kb on - strand, within Echvi_0099at 98.772 kb on + strand, within Echvi_0099at 98.772 kb on + strand, within Echvi_0099at 98.772 kb on + strand, within Echvi_0099at 98.773 kb on - strand, within Echvi_0099at 98.783 kb on + strand, within Echvi_0099at 98.815 kb on + strand, within Echvi_0099at 98.815 kb on + strand, within Echvi_0099at 98.815 kb on + strand, within Echvi_0099at 98.816 kb on - strand, within Echvi_0099at 98.816 kb on - strand, within Echvi_0099at 98.816 kb on - strand, within Echvi_0099at 98.820 kb on - strand, within Echvi_0099at 98.950 kb on - strand, within Echvi_0099at 99.032 kb on + strandat 99.060 kb on - strandat 99.068 kb on + strandat 99.226 kb on + strandat 99.227 kb on - strandat 99.227 kb on - strandat 99.227 kb on - strandat 99.236 kb on - strandat 99.256 kb on + strandat 99.306 kb on + strand, within Echvi_0100at 99.307 kb on - strand, within Echvi_0100at 99.308 kb on + strand, within Echvi_0100at 99.309 kb on - strand, within Echvi_0100at 99.309 kb on - strand, within Echvi_0100at 99.334 kb on - strand, within Echvi_0100at 99.479 kb on + strand, within Echvi_0100at 99.516 kb on + strand, within Echvi_0100at 99.517 kb on - strand, within Echvi_0100at 99.521 kb on + strand, within Echvi_0100at 99.521 kb on + strand, within Echvi_0100at 99.575 kb on + strand, within Echvi_0100at 99.575 kb on + strand, within Echvi_0100at 99.576 kb on - strand, within Echvi_0100at 99.586 kb on + strand, within Echvi_0100at 99.586 kb on + strand, within Echvi_0100at 99.586 kb on + strand, within Echvi_0100at 99.587 kb on - strand, within Echvi_0100at 99.635 kb on - strand, within Echvi_0100at 99.652 kb on + strand, within Echvi_0100at 99.674 kb on + strand, within Echvi_0100at 99.706 kb on + strand, within Echvi_0100at 99.707 kb on - strand, within Echvi_0100at 99.707 kb on - strand, within Echvi_0100at 99.707 kb on - strand, within Echvi_0100at 99.708 kb on + strand, within Echvi_0100at 99.793 kb on - strand, within Echvi_0100at 99.833 kb on + strand, within Echvi_0100at 99.834 kb on - strand, within Echvi_0100at 99.834 kb on - strand, within Echvi_0100at 99.874 kb on + strandat 99.875 kb on - strandat 99.916 kb on - strandat 99.947 kb on + strandat 99.948 kb on - strandat 99.948 kb on - strandat 99.974 kb on + strandat 99.975 kb on - strandat 99.986 kb on - strandat 100.128 kb on + strand, within Echvi_0101at 100.129 kb on - strand, within Echvi_0101at 100.194 kb on + strand, within Echvi_0101at 100.200 kb on - strand, within Echvi_0101at 100.212 kb on + strand, within Echvi_0101at 100.245 kb on - strand, within Echvi_0101at 100.247 kb on - strand, within Echvi_0101at 100.247 kb on - strand, within Echvi_0101at 100.254 kb on - strand, within Echvi_0101at 100.399 kb on + strand, within Echvi_0101at 100.399 kb on + strand, within Echvi_0101at 100.400 kb on - strand, within Echvi_0101at 100.400 kb on - strand, within Echvi_0101at 100.474 kb on + strand, within Echvi_0101at 100.540 kb on + strandat 100.540 kb on + strandat 100.582 kb on + strandat 100.730 kb on + strand, within Echvi_0102at 100.739 kb on + strand, within Echvi_0102at 100.753 kb on + strand, within Echvi_0102at 100.883 kb on + strand, within Echvi_0102at 100.892 kb on + strand, within Echvi_0102

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 2 mM
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98,374 - Echvi_0099 0.36 +0.2
98,374 - Echvi_0099 0.36 +0.8
98,387 + Echvi_0099 0.37 -0.8
98,411 + Echvi_0099 0.39 +0.3
98,412 - Echvi_0099 0.39 +0.6
98,496 + Echvi_0099 0.46 -1.6
98,536 + Echvi_0099 0.50 +0.5
98,580 + Echvi_0099 0.53 +0.6
98,580 + Echvi_0099 0.53 +0.1
98,664 - Echvi_0099 0.60 -0.3
98,772 + Echvi_0099 0.69 -2.4
98,772 + Echvi_0099 0.69 -0.8
98,772 + Echvi_0099 0.69 +1.1
98,773 - Echvi_0099 0.70 -1.1
98,783 + Echvi_0099 0.70 -2.1
98,815 + Echvi_0099 0.73 -0.7
98,815 + Echvi_0099 0.73 -1.1
98,815 + Echvi_0099 0.73 -0.2
98,816 - Echvi_0099 0.73 -0.3
98,816 - Echvi_0099 0.73 -1.0
98,816 - Echvi_0099 0.73 +0.0
98,820 - Echvi_0099 0.74 -1.2
98,950 - Echvi_0099 0.84 -0.3
99,032 + +0.5
99,060 - +0.4
99,068 + +0.6
99,226 + -0.7
99,227 - -0.2
99,227 - +1.2
99,227 - +0.0
99,236 - -0.9
99,256 + -0.4
99,306 + Echvi_0100 0.15 +0.3
99,307 - Echvi_0100 0.15 +2.5
99,308 + Echvi_0100 0.16 -0.4
99,309 - Echvi_0100 0.16 -0.0
99,309 - Echvi_0100 0.16 +0.9
99,334 - Echvi_0100 0.19 -0.9
99,479 + Echvi_0100 0.39 +0.3
99,516 + Echvi_0100 0.44 -1.2
99,517 - Echvi_0100 0.45 +0.5
99,521 + Echvi_0100 0.45 +0.2
99,521 + Echvi_0100 0.45 +1.1
99,575 + Echvi_0100 0.53 -1.1
99,575 + Echvi_0100 0.53 +1.9
99,576 - Echvi_0100 0.53 -1.1
99,586 + Echvi_0100 0.54 -0.3
99,586 + Echvi_0100 0.54 +1.0
99,586 + Echvi_0100 0.54 -0.1
99,587 - Echvi_0100 0.54 +0.7
99,635 - Echvi_0100 0.61 +0.7
99,652 + Echvi_0100 0.63 +0.4
99,674 + Echvi_0100 0.66 +0.1
99,706 + Echvi_0100 0.71 -0.6
99,707 - Echvi_0100 0.71 +0.2
99,707 - Echvi_0100 0.71 +1.0
99,707 - Echvi_0100 0.71 +1.5
99,708 + Echvi_0100 0.71 +1.3
99,793 - Echvi_0100 0.83 -0.1
99,833 + Echvi_0100 0.88 +0.2
99,834 - Echvi_0100 0.89 +0.3
99,834 - Echvi_0100 0.89 +0.2
99,874 + -0.0
99,875 - +0.3
99,916 - +0.0
99,947 + -0.6
99,948 - -0.1
99,948 - +0.4
99,974 + -1.1
99,975 - +1.2
99,986 - +0.1
100,128 + Echvi_0101 0.33 -0.9
100,129 - Echvi_0101 0.33 -0.6
100,194 + Echvi_0101 0.44 +0.4
100,200 - Echvi_0101 0.45 -1.2
100,212 + Echvi_0101 0.47 -0.5
100,245 - Echvi_0101 0.52 -1.3
100,247 - Echvi_0101 0.52 +0.8
100,247 - Echvi_0101 0.52 -0.2
100,254 - Echvi_0101 0.53 -0.1
100,399 + Echvi_0101 0.77 -0.7
100,399 + Echvi_0101 0.77 +1.1
100,400 - Echvi_0101 0.77 -0.4
100,400 - Echvi_0101 0.77 -1.0
100,474 + Echvi_0101 0.89 -0.3
100,540 + +0.1
100,540 + +1.7
100,582 + +0.4
100,730 + Echvi_0102 0.36 +0.9
100,739 + Echvi_0102 0.38 -0.4
100,753 + Echvi_0102 0.41 -0.2
100,883 + Echvi_0102 0.72 -0.3
100,892 + Echvi_0102 0.74 +0.6

Or see this region's nucleotide sequence