Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21550

Experiment: m.b. copper (II) chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21535 and CA264_21540 overlap by 67 nucleotidesCA264_21540 and CA264_21545 are separated by 125 nucleotidesCA264_21545 and CA264_21550 are separated by 219 nucleotidesCA264_21550 and CA264_21555 are separated by 85 nucleotidesCA264_21555 and CA264_21560 are separated by 8 nucleotides CA264_21535: CA264_21535 - hypothetical protein, at 177,034 to 177,399 _21535 CA264_21540: CA264_21540 - hypothetical protein, at 177,333 to 177,509 _21540 CA264_21545: CA264_21545 - AraC family transcriptional regulator, at 177,635 to 177,823 _21545 CA264_21550: CA264_21550 - hypothetical protein, at 178,043 to 178,714 _21550 CA264_21555: CA264_21555 - phosphoribosylpyrophosphate synthetase, at 178,800 to 179,114 _21555 CA264_21560: CA264_21560 - copper-translocating P-type ATPase, at 179,123 to 181,267 _21560 Position (kb) 178 179Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 177.055 kb on + strandat 177.075 kb on + strand, within CA264_21535at 177.095 kb on + strand, within CA264_21535at 177.099 kb on + strand, within CA264_21535at 177.099 kb on + strand, within CA264_21535at 177.099 kb on + strand, within CA264_21535at 177.142 kb on - strand, within CA264_21535at 177.150 kb on - strand, within CA264_21535at 177.183 kb on + strand, within CA264_21535at 177.212 kb on + strand, within CA264_21535at 177.234 kb on + strand, within CA264_21535at 177.234 kb on + strand, within CA264_21535at 177.235 kb on - strand, within CA264_21535at 177.236 kb on + strand, within CA264_21535at 177.236 kb on + strand, within CA264_21535at 177.236 kb on + strand, within CA264_21535at 177.240 kb on + strand, within CA264_21535at 177.241 kb on - strand, within CA264_21535at 177.363 kb on + strandat 177.364 kb on - strandat 177.364 kb on - strandat 177.419 kb on + strand, within CA264_21540at 177.419 kb on + strand, within CA264_21540at 177.419 kb on + strand, within CA264_21540at 177.420 kb on - strand, within CA264_21540at 177.424 kb on + strand, within CA264_21540at 177.424 kb on + strand, within CA264_21540at 177.425 kb on - strand, within CA264_21540at 177.438 kb on - strand, within CA264_21540at 177.463 kb on + strand, within CA264_21540at 177.463 kb on + strand, within CA264_21540at 177.533 kb on + strandat 177.541 kb on - strandat 177.541 kb on - strandat 177.557 kb on + strandat 177.557 kb on + strandat 177.634 kb on + strandat 177.634 kb on + strandat 177.635 kb on - strandat 177.635 kb on - strandat 177.635 kb on - strandat 177.686 kb on - strand, within CA264_21545at 177.751 kb on + strand, within CA264_21545at 177.773 kb on + strand, within CA264_21545at 177.802 kb on + strand, within CA264_21545at 177.803 kb on - strand, within CA264_21545at 177.805 kb on + strandat 177.819 kb on - strandat 177.846 kb on + strandat 177.846 kb on + strandat 177.847 kb on - strandat 177.847 kb on - strandat 177.848 kb on + strandat 177.848 kb on + strandat 177.849 kb on - strandat 177.849 kb on - strandat 177.895 kb on - strandat 177.899 kb on + strandat 177.899 kb on + strandat 177.928 kb on + strandat 177.928 kb on + strandat 177.979 kb on - strandat 177.979 kb on - strandat 177.983 kb on - strandat 177.987 kb on - strandat 178.024 kb on + strandat 178.025 kb on - strandat 178.038 kb on + strandat 178.384 kb on - strand, within CA264_21550at 178.393 kb on - strand, within CA264_21550at 178.393 kb on - strand, within CA264_21550at 178.395 kb on + strand, within CA264_21550at 178.412 kb on + strand, within CA264_21550at 178.415 kb on + strand, within CA264_21550at 178.415 kb on + strand, within CA264_21550at 178.415 kb on + strand, within CA264_21550at 178.415 kb on + strand, within CA264_21550at 178.415 kb on + strand, within CA264_21550at 178.415 kb on + strand, within CA264_21550at 178.416 kb on - strand, within CA264_21550at 178.416 kb on - strand, within CA264_21550at 178.416 kb on - strand, within CA264_21550at 178.416 kb on - strand, within CA264_21550at 178.473 kb on + strand, within CA264_21550at 178.493 kb on + strand, within CA264_21550at 178.616 kb on + strand, within CA264_21550at 178.617 kb on - strand, within CA264_21550at 178.656 kb on + strandat 178.660 kb on + strandat 178.660 kb on + strandat 178.661 kb on - strandat 178.661 kb on - strandat 178.662 kb on + strandat 178.662 kb on + strandat 178.689 kb on - strandat 178.718 kb on - strandat 178.772 kb on - strandat 178.772 kb on - strandat 178.775 kb on + strandat 178.778 kb on - strandat 178.816 kb on - strandat 178.875 kb on - strand, within CA264_21555at 178.875 kb on - strand, within CA264_21555at 178.921 kb on + strand, within CA264_21555at 178.951 kb on + strand, within CA264_21555at 178.951 kb on + strand, within CA264_21555at 178.986 kb on - strand, within CA264_21555at 179.024 kb on - strand, within CA264_21555at 179.055 kb on + strand, within CA264_21555at 179.055 kb on + strand, within CA264_21555at 179.056 kb on - strand, within CA264_21555at 179.056 kb on - strand, within CA264_21555at 179.112 kb on + strandat 179.112 kb on + strandat 179.123 kb on - strandat 179.286 kb on + strandat 179.286 kb on + strandat 179.353 kb on + strand, within CA264_21560at 179.353 kb on + strand, within CA264_21560at 179.423 kb on - strand, within CA264_21560at 179.443 kb on + strand, within CA264_21560at 179.489 kb on + strand, within CA264_21560at 179.496 kb on - strand, within CA264_21560at 179.536 kb on + strand, within CA264_21560at 179.591 kb on + strand, within CA264_21560at 179.591 kb on + strand, within CA264_21560at 179.591 kb on + strand, within CA264_21560at 179.591 kb on + strand, within CA264_21560at 179.591 kb on + strand, within CA264_21560at 179.591 kb on + strand, within CA264_21560at 179.591 kb on + strand, within CA264_21560at 179.591 kb on + strand, within CA264_21560at 179.592 kb on - strand, within CA264_21560at 179.595 kb on + strand, within CA264_21560at 179.595 kb on + strand, within CA264_21560at 179.595 kb on + strand, within CA264_21560at 179.595 kb on + strand, within CA264_21560at 179.595 kb on + strand, within CA264_21560at 179.595 kb on + strand, within CA264_21560at 179.596 kb on - strand, within CA264_21560at 179.596 kb on - strand, within CA264_21560at 179.596 kb on - strand, within CA264_21560at 179.596 kb on - strand, within CA264_21560at 179.704 kb on - strand, within CA264_21560

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM
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177,055 + -0.1
177,075 + CA264_21535 0.11 -3.5
177,095 + CA264_21535 0.17 -2.2
177,099 + CA264_21535 0.18 -1.8
177,099 + CA264_21535 0.18 -2.0
177,099 + CA264_21535 0.18 -1.1
177,142 - CA264_21535 0.30 -1.6
177,150 - CA264_21535 0.32 -2.2
177,183 + CA264_21535 0.41 -0.9
177,212 + CA264_21535 0.49 -3.9
177,234 + CA264_21535 0.55 -1.0
177,234 + CA264_21535 0.55 -2.4
177,235 - CA264_21535 0.55 -1.4
177,236 + CA264_21535 0.55 -3.3
177,236 + CA264_21535 0.55 -1.7
177,236 + CA264_21535 0.55 -4.3
177,240 + CA264_21535 0.56 -1.3
177,241 - CA264_21535 0.57 -1.1
177,363 + -1.9
177,364 - -2.0
177,364 - -1.0
177,419 + CA264_21540 0.49 -1.6
177,419 + CA264_21540 0.49 -2.2
177,419 + CA264_21540 0.49 -2.2
177,420 - CA264_21540 0.49 -0.7
177,424 + CA264_21540 0.51 -1.8
177,424 + CA264_21540 0.51 -1.5
177,425 - CA264_21540 0.52 -1.9
177,438 - CA264_21540 0.59 -0.6
177,463 + CA264_21540 0.73 -1.7
177,463 + CA264_21540 0.73 -3.0
177,533 + -1.2
177,541 - -1.5
177,541 - -1.2
177,557 + -2.4
177,557 + -2.4
177,634 + +0.7
177,634 + -1.6
177,635 - -1.0
177,635 - -1.6
177,635 - +0.1
177,686 - CA264_21545 0.27 -2.4
177,751 + CA264_21545 0.61 -3.0
177,773 + CA264_21545 0.73 -3.0
177,802 + CA264_21545 0.88 -2.1
177,803 - CA264_21545 0.89 -0.7
177,805 + -4.6
177,819 - -1.3
177,846 + -1.8
177,846 + -2.4
177,847 - -2.9
177,847 - -1.0
177,848 + -2.0
177,848 + -2.4
177,849 - -1.9
177,849 - +0.1
177,895 - -1.0
177,899 + -2.0
177,899 + -2.9
177,928 + -2.4
177,928 + -2.4
177,979 - -1.2
177,979 - -1.4
177,983 - -1.1
177,987 - +0.0
178,024 + -2.7
178,025 - -1.5
178,038 + -0.7
178,384 - CA264_21550 0.51 -0.8
178,393 - CA264_21550 0.52 +0.7
178,393 - CA264_21550 0.52 -0.4
178,395 + CA264_21550 0.52 -2.8
178,412 + CA264_21550 0.55 -1.3
178,415 + CA264_21550 0.55 -1.3
178,415 + CA264_21550 0.55 -1.6
178,415 + CA264_21550 0.55 -1.2
178,415 + CA264_21550 0.55 -1.5
178,415 + CA264_21550 0.55 -2.0
178,415 + CA264_21550 0.55 -2.5
178,416 - CA264_21550 0.56 +0.3
178,416 - CA264_21550 0.56 +1.2
178,416 - CA264_21550 0.56 -0.6
178,416 - CA264_21550 0.56 -0.6
178,473 + CA264_21550 0.64 -2.5
178,493 + CA264_21550 0.67 -1.4
178,616 + CA264_21550 0.85 -0.4
178,617 - CA264_21550 0.85 -1.8
178,656 + -0.5
178,660 + -1.3
178,660 + -1.2
178,661 - -0.3
178,661 - -1.1
178,662 + -3.9
178,662 + -1.6
178,689 - -0.9
178,718 - +0.3
178,772 - -3.3
178,772 - -1.8
178,775 + -3.2
178,778 - -2.1
178,816 - -0.3
178,875 - CA264_21555 0.24 -1.2
178,875 - CA264_21555 0.24 -2.2
178,921 + CA264_21555 0.38 -0.1
178,951 + CA264_21555 0.48 -0.6
178,951 + CA264_21555 0.48 -1.8
178,986 - CA264_21555 0.59 -1.0
179,024 - CA264_21555 0.71 -1.4
179,055 + CA264_21555 0.81 -2.4
179,055 + CA264_21555 0.81 -3.4
179,056 - CA264_21555 0.81 -1.2
179,056 - CA264_21555 0.81 -0.4
179,112 + -0.2
179,112 + -0.2
179,123 - -1.1
179,286 + -0.9
179,286 + +0.2
179,353 + CA264_21560 0.11 -0.4
179,353 + CA264_21560 0.11 +0.1
179,423 - CA264_21560 0.14 -2.2
179,443 + CA264_21560 0.15 -0.2
179,489 + CA264_21560 0.17 -0.5
179,496 - CA264_21560 0.17 -1.3
179,536 + CA264_21560 0.19 -0.5
179,591 + CA264_21560 0.22 -0.2
179,591 + CA264_21560 0.22 -0.2
179,591 + CA264_21560 0.22 -0.2
179,591 + CA264_21560 0.22 -1.5
179,591 + CA264_21560 0.22 -1.3
179,591 + CA264_21560 0.22 -0.4
179,591 + CA264_21560 0.22 -0.7
179,591 + CA264_21560 0.22 -1.0
179,592 - CA264_21560 0.22 +0.5
179,595 + CA264_21560 0.22 -0.1
179,595 + CA264_21560 0.22 -1.7
179,595 + CA264_21560 0.22 -0.0
179,595 + CA264_21560 0.22 -0.5
179,595 + CA264_21560 0.22 -0.1
179,595 + CA264_21560 0.22 -0.3
179,596 - CA264_21560 0.22 -2.2
179,596 - CA264_21560 0.22 -1.5
179,596 - CA264_21560 0.22 -2.0
179,596 - CA264_21560 0.22 -0.5
179,704 - CA264_21560 0.27 -1.7

Or see this region's nucleotide sequence