Experiment: m.b. copper (II) chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_21525 and CA264_21530 are separated by 156 nucleotides CA264_21530 and CA264_21535 are separated by 239 nucleotides CA264_21535 and CA264_21540 overlap by 67 nucleotides CA264_21540 and CA264_21545 are separated by 125 nucleotides CA264_21545 and CA264_21550 are separated by 219 nucleotides
CA264_21525: CA264_21525 - DUF305 domain-containing protein, at 175,607 to 176,320
_21525
CA264_21530: CA264_21530 - four-helix bundle copper-binding protein, at 176,477 to 176,794
_21530
CA264_21535: CA264_21535 - hypothetical protein, at 177,034 to 177,399
_21535
CA264_21540: CA264_21540 - hypothetical protein, at 177,333 to 177,509
_21540
CA264_21545: CA264_21545 - AraC family transcriptional regulator, at 177,635 to 177,823
_21545
CA264_21550: CA264_21550 - hypothetical protein, at 178,043 to 178,714
_21550
Position (kb) 177
178 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 176.042 kb on + strand, within CA264_21525 at 176.220 kb on - strand, within CA264_21525 at 176.228 kb on - strand, within CA264_21525 at 176.328 kb on - strand at 176.457 kb on + strand at 176.469 kb on + strand at 176.469 kb on + strand at 176.472 kb on - strand at 176.603 kb on + strand, within CA264_21530 at 176.606 kb on + strand, within CA264_21530 at 176.636 kb on + strand, within CA264_21530 at 176.636 kb on + strand, within CA264_21530 at 176.636 kb on + strand, within CA264_21530 at 176.640 kb on + strand, within CA264_21530 at 176.641 kb on - strand, within CA264_21530 at 176.662 kb on + strand, within CA264_21530 at 176.663 kb on - strand, within CA264_21530 at 176.742 kb on + strand, within CA264_21530 at 176.773 kb on + strand at 176.774 kb on - strand at 176.777 kb on + strand at 176.777 kb on + strand at 176.778 kb on - strand at 176.778 kb on - strand at 176.799 kb on - strand at 176.810 kb on - strand at 176.831 kb on - strand at 176.831 kb on - strand at 176.831 kb on - strand at 176.831 kb on - strand at 176.831 kb on - strand at 176.860 kb on - strand at 176.860 kb on - strand at 176.880 kb on + strand at 176.881 kb on - strand at 176.883 kb on + strand at 176.892 kb on + strand at 176.948 kb on + strand at 176.948 kb on + strand at 176.949 kb on - strand at 176.953 kb on + strand at 176.970 kb on - strand at 177.037 kb on + strand at 177.037 kb on + strand at 177.038 kb on - strand at 177.038 kb on - strand at 177.055 kb on + strand at 177.075 kb on + strand, within CA264_21535 at 177.095 kb on + strand, within CA264_21535 at 177.099 kb on + strand, within CA264_21535 at 177.099 kb on + strand, within CA264_21535 at 177.099 kb on + strand, within CA264_21535 at 177.142 kb on - strand, within CA264_21535 at 177.150 kb on - strand, within CA264_21535 at 177.183 kb on + strand, within CA264_21535 at 177.212 kb on + strand, within CA264_21535 at 177.234 kb on + strand, within CA264_21535 at 177.234 kb on + strand, within CA264_21535 at 177.235 kb on - strand, within CA264_21535 at 177.236 kb on + strand, within CA264_21535 at 177.236 kb on + strand, within CA264_21535 at 177.236 kb on + strand, within CA264_21535 at 177.240 kb on + strand, within CA264_21535 at 177.241 kb on - strand, within CA264_21535 at 177.363 kb on + strand at 177.364 kb on - strand at 177.364 kb on - strand at 177.419 kb on + strand, within CA264_21540 at 177.419 kb on + strand, within CA264_21540 at 177.419 kb on + strand, within CA264_21540 at 177.420 kb on - strand, within CA264_21540 at 177.424 kb on + strand, within CA264_21540 at 177.424 kb on + strand, within CA264_21540 at 177.425 kb on - strand, within CA264_21540 at 177.438 kb on - strand, within CA264_21540 at 177.463 kb on + strand, within CA264_21540 at 177.463 kb on + strand, within CA264_21540 at 177.533 kb on + strand at 177.541 kb on - strand at 177.541 kb on - strand at 177.557 kb on + strand at 177.557 kb on + strand at 177.634 kb on + strand at 177.634 kb on + strand at 177.635 kb on - strand at 177.635 kb on - strand at 177.635 kb on - strand at 177.686 kb on - strand, within CA264_21545 at 177.751 kb on + strand, within CA264_21545 at 177.773 kb on + strand, within CA264_21545 at 177.802 kb on + strand, within CA264_21545 at 177.803 kb on - strand, within CA264_21545 at 177.805 kb on + strand at 177.819 kb on - strand at 177.846 kb on + strand at 177.846 kb on + strand at 177.847 kb on - strand at 177.847 kb on - strand at 177.848 kb on + strand at 177.848 kb on + strand at 177.849 kb on - strand at 177.849 kb on - strand at 177.895 kb on - strand at 177.899 kb on + strand at 177.899 kb on + strand at 177.928 kb on + strand at 177.928 kb on + strand at 177.979 kb on - strand at 177.979 kb on - strand at 177.983 kb on - strand at 177.987 kb on - strand at 178.024 kb on + strand at 178.025 kb on - strand at 178.038 kb on + strand at 178.384 kb on - strand, within CA264_21550 at 178.393 kb on - strand, within CA264_21550 at 178.393 kb on - strand, within CA264_21550 at 178.395 kb on + strand, within CA264_21550
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM remove 176,042 + CA264_21525 0.61 -1.1 176,220 - CA264_21525 0.86 -0.7 176,228 - CA264_21525 0.87 -0.5 176,328 - -0.5 176,457 + +1.6 176,469 + -0.3 176,469 + -0.8 176,472 - +0.5 176,603 + CA264_21530 0.40 +0.4 176,606 + CA264_21530 0.41 -0.6 176,636 + CA264_21530 0.50 -0.1 176,636 + CA264_21530 0.50 -0.3 176,636 + CA264_21530 0.50 -2.2 176,640 + CA264_21530 0.51 -0.5 176,641 - CA264_21530 0.52 -1.4 176,662 + CA264_21530 0.58 -1.2 176,663 - CA264_21530 0.58 -1.4 176,742 + CA264_21530 0.83 -0.2 176,773 + -1.8 176,774 - -0.5 176,777 + -1.2 176,777 + -1.9 176,778 - -0.2 176,778 - -0.5 176,799 - -1.5 176,810 - -1.1 176,831 - -1.1 176,831 - -1.0 176,831 - +1.3 176,831 - -1.0 176,831 - +0.2 176,860 - -0.9 176,860 - +0.9 176,880 + +0.7 176,881 - -1.6 176,883 + -3.0 176,892 + -1.2 176,948 + -1.9 176,948 + -1.7 176,949 - -0.8 176,953 + -1.8 176,970 - -0.1 177,037 + -1.1 177,037 + -1.1 177,038 - -1.3 177,038 - -1.2 177,055 + -0.1 177,075 + CA264_21535 0.11 -3.5 177,095 + CA264_21535 0.17 -2.2 177,099 + CA264_21535 0.18 -1.8 177,099 + CA264_21535 0.18 -2.0 177,099 + CA264_21535 0.18 -1.1 177,142 - CA264_21535 0.30 -1.6 177,150 - CA264_21535 0.32 -2.2 177,183 + CA264_21535 0.41 -0.9 177,212 + CA264_21535 0.49 -3.9 177,234 + CA264_21535 0.55 -1.0 177,234 + CA264_21535 0.55 -2.4 177,235 - CA264_21535 0.55 -1.4 177,236 + CA264_21535 0.55 -3.3 177,236 + CA264_21535 0.55 -1.7 177,236 + CA264_21535 0.55 -4.3 177,240 + CA264_21535 0.56 -1.3 177,241 - CA264_21535 0.57 -1.1 177,363 + -1.9 177,364 - -2.0 177,364 - -1.0 177,419 + CA264_21540 0.49 -1.6 177,419 + CA264_21540 0.49 -2.2 177,419 + CA264_21540 0.49 -2.2 177,420 - CA264_21540 0.49 -0.7 177,424 + CA264_21540 0.51 -1.8 177,424 + CA264_21540 0.51 -1.5 177,425 - CA264_21540 0.52 -1.9 177,438 - CA264_21540 0.59 -0.6 177,463 + CA264_21540 0.73 -1.7 177,463 + CA264_21540 0.73 -3.0 177,533 + -1.2 177,541 - -1.5 177,541 - -1.2 177,557 + -2.4 177,557 + -2.4 177,634 + +0.7 177,634 + -1.6 177,635 - -1.0 177,635 - -1.6 177,635 - +0.1 177,686 - CA264_21545 0.27 -2.4 177,751 + CA264_21545 0.61 -3.0 177,773 + CA264_21545 0.73 -3.0 177,802 + CA264_21545 0.88 -2.1 177,803 - CA264_21545 0.89 -0.7 177,805 + -4.6 177,819 - -1.3 177,846 + -1.8 177,846 + -2.4 177,847 - -2.9 177,847 - -1.0 177,848 + -2.0 177,848 + -2.4 177,849 - -1.9 177,849 - +0.1 177,895 - -1.0 177,899 + -2.0 177,899 + -2.9 177,928 + -2.4 177,928 + -2.4 177,979 - -1.2 177,979 - -1.4 177,983 - -1.1 177,987 - +0.0 178,024 + -2.7 178,025 - -1.5 178,038 + -0.7 178,384 - CA264_21550 0.51 -0.8 178,393 - CA264_21550 0.52 +0.7 178,393 - CA264_21550 0.52 -0.4 178,395 + CA264_21550 0.52 -2.8
Or see this region's nucleotide sequence