Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21450

Experiment: m.b. copper (II) chloride 0.16 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_21445 and CA264_21450 overlap by 14 nucleotidesCA264_21450 and CA264_21455 are separated by 65 nucleotides CA264_21445: CA264_21445 - metal transporter, at 154,332 to 156,236 _21445 CA264_21450: CA264_21450 - hypothetical protein, at 156,223 to 157,485 _21450 CA264_21455: CA264_21455 - hypothetical protein, at 157,551 to 158,864 _21455 Position (kb) 156 157 158Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 155.224 kb on - strand, within CA264_21445at 155.308 kb on + strand, within CA264_21445at 155.388 kb on - strand, within CA264_21445at 156.235 kb on - strandat 156.505 kb on - strand, within CA264_21450at 156.505 kb on - strand, within CA264_21450at 156.526 kb on - strand, within CA264_21450at 156.611 kb on - strand, within CA264_21450at 156.613 kb on - strand, within CA264_21450at 156.613 kb on - strand, within CA264_21450at 156.644 kb on - strand, within CA264_21450at 156.700 kb on - strand, within CA264_21450at 156.710 kb on - strand, within CA264_21450at 156.732 kb on - strand, within CA264_21450at 156.745 kb on - strand, within CA264_21450at 157.623 kb on - strandat 157.648 kb on - strandat 157.725 kb on - strand, within CA264_21455at 157.876 kb on - strand, within CA264_21455at 157.876 kb on - strand, within CA264_21455at 157.940 kb on - strand, within CA264_21455at 157.947 kb on - strand, within CA264_21455at 158.027 kb on - strand, within CA264_21455at 158.029 kb on - strand, within CA264_21455at 158.151 kb on - strand, within CA264_21455at 158.348 kb on - strand, within CA264_21455at 158.362 kb on - strand, within CA264_21455at 158.362 kb on - strand, within CA264_21455

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM
remove
155,224 - CA264_21445 0.47 -2.1
155,308 + CA264_21445 0.51 -0.3
155,388 - CA264_21445 0.55 -1.5
156,235 - -0.8
156,505 - CA264_21450 0.22 -2.3
156,505 - CA264_21450 0.22 -0.8
156,526 - CA264_21450 0.24 -3.2
156,611 - CA264_21450 0.31 -0.5
156,613 - CA264_21450 0.31 -3.0
156,613 - CA264_21450 0.31 +0.7
156,644 - CA264_21450 0.33 -2.8
156,700 - CA264_21450 0.38 -2.8
156,710 - CA264_21450 0.39 -4.7
156,732 - CA264_21450 0.40 -2.3
156,745 - CA264_21450 0.41 -1.8
157,623 - -0.8
157,648 - -2.0
157,725 - CA264_21455 0.13 -0.3
157,876 - CA264_21455 0.25 -1.5
157,876 - CA264_21455 0.25 -4.4
157,940 - CA264_21455 0.30 -0.8
157,947 - CA264_21455 0.30 -4.5
158,027 - CA264_21455 0.36 -1.1
158,029 - CA264_21455 0.36 -3.1
158,151 - CA264_21455 0.46 +0.7
158,348 - CA264_21455 0.61 +0.7
158,362 - CA264_21455 0.62 -1.5
158,362 - CA264_21455 0.62 -3.8

Or see this region's nucleotide sequence