Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_21255

Experiment: m.b. copper (II) chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_21250 and CA264_21255 are separated by 570 nucleotidesCA264_21255 and CA264_21260 are separated by 105 nucleotides CA264_21250: CA264_21250 - hypothetical protein, at 113,726 to 114,178 _21250 CA264_21255: CA264_21255 - hypothetical protein, at 114,749 to 115,135 _21255 CA264_21260: CA264_21260 - cation transporter, at 115,241 to 119,065 _21260 Position (kb) 114 115 116Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 113.769 kb on + strandat 113.769 kb on + strandat 113.770 kb on - strandat 113.816 kb on + strand, within CA264_21250at 113.816 kb on + strand, within CA264_21250at 113.817 kb on - strand, within CA264_21250at 113.847 kb on + strand, within CA264_21250at 113.847 kb on + strand, within CA264_21250at 113.848 kb on - strand, within CA264_21250at 113.867 kb on + strand, within CA264_21250at 113.868 kb on - strand, within CA264_21250at 113.889 kb on - strand, within CA264_21250at 113.932 kb on + strand, within CA264_21250at 114.061 kb on + strand, within CA264_21250at 114.064 kb on - strand, within CA264_21250at 114.070 kb on + strand, within CA264_21250at 114.071 kb on - strand, within CA264_21250at 114.071 kb on - strand, within CA264_21250at 114.072 kb on + strand, within CA264_21250at 114.073 kb on - strand, within CA264_21250at 114.073 kb on - strand, within CA264_21250at 114.119 kb on + strand, within CA264_21250at 114.139 kb on - strandat 114.186 kb on + strandat 114.225 kb on + strandat 114.235 kb on + strandat 114.235 kb on + strandat 114.236 kb on - strandat 114.238 kb on + strandat 114.238 kb on + strandat 114.239 kb on - strandat 114.299 kb on + strandat 114.351 kb on + strandat 114.422 kb on + strandat 114.422 kb on + strandat 114.423 kb on - strandat 114.423 kb on - strandat 114.427 kb on - strandat 114.461 kb on + strandat 114.461 kb on + strandat 114.462 kb on - strandat 114.490 kb on + strandat 114.490 kb on + strandat 114.491 kb on - strandat 114.491 kb on - strandat 114.493 kb on + strandat 114.494 kb on - strandat 114.498 kb on - strandat 114.522 kb on + strandat 114.526 kb on + strandat 114.526 kb on + strandat 114.528 kb on + strandat 114.528 kb on + strandat 114.544 kb on + strandat 114.545 kb on - strandat 114.547 kb on - strandat 114.571 kb on + strandat 114.580 kb on + strandat 114.580 kb on + strandat 114.581 kb on - strandat 114.581 kb on - strandat 114.581 kb on - strandat 114.611 kb on + strandat 114.611 kb on + strandat 114.611 kb on + strandat 114.612 kb on - strandat 114.612 kb on - strandat 114.658 kb on - strandat 114.682 kb on + strandat 114.682 kb on + strandat 114.691 kb on + strandat 114.693 kb on + strandat 114.694 kb on - strandat 114.694 kb on - strandat 114.694 kb on - strandat 114.694 kb on - strandat 114.694 kb on - strandat 114.694 kb on - strandat 114.697 kb on + strandat 114.698 kb on - strandat 114.768 kb on + strandat 114.768 kb on + strandat 114.774 kb on + strandat 114.775 kb on - strandat 114.793 kb on + strand, within CA264_21255at 114.847 kb on + strand, within CA264_21255at 114.847 kb on + strand, within CA264_21255at 114.848 kb on - strand, within CA264_21255at 114.889 kb on + strand, within CA264_21255at 114.919 kb on + strand, within CA264_21255at 114.920 kb on - strand, within CA264_21255at 114.985 kb on + strand, within CA264_21255at 115.030 kb on + strand, within CA264_21255at 115.102 kb on + strandat 115.102 kb on + strandat 115.103 kb on - strandat 115.106 kb on + strandat 115.107 kb on - strandat 115.240 kb on + strandat 115.241 kb on - strandat 115.321 kb on + strandat 115.340 kb on - strandat 115.473 kb on - strandat 115.481 kb on - strandat 115.483 kb on + strandat 115.484 kb on - strandat 115.553 kb on + strandat 115.553 kb on + strandat 115.553 kb on + strandat 115.554 kb on - strandat 115.554 kb on - strandat 115.555 kb on + strandat 115.555 kb on + strandat 115.634 kb on - strand, within CA264_21260at 115.694 kb on + strand, within CA264_21260at 115.695 kb on - strand, within CA264_21260at 115.700 kb on + strand, within CA264_21260at 115.701 kb on - strand, within CA264_21260at 115.784 kb on + strand, within CA264_21260at 115.789 kb on + strand, within CA264_21260at 115.789 kb on + strand, within CA264_21260at 115.789 kb on + strand, within CA264_21260at 115.789 kb on + strand, within CA264_21260at 115.789 kb on + strand, within CA264_21260at 115.790 kb on - strand, within CA264_21260at 115.794 kb on - strand, within CA264_21260at 115.794 kb on - strand, within CA264_21260at 115.894 kb on + strand, within CA264_21260at 115.982 kb on + strand, within CA264_21260

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM
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113,769 + +0.2
113,769 + +0.1
113,770 - -0.3
113,816 + CA264_21250 0.20 +0.5
113,816 + CA264_21250 0.20 +0.5
113,817 - CA264_21250 0.20 +0.4
113,847 + CA264_21250 0.27 +1.3
113,847 + CA264_21250 0.27 +0.5
113,848 - CA264_21250 0.27 -0.0
113,867 + CA264_21250 0.31 -0.3
113,868 - CA264_21250 0.31 -0.0
113,889 - CA264_21250 0.36 +0.1
113,932 + CA264_21250 0.45 +1.3
114,061 + CA264_21250 0.74 +1.1
114,064 - CA264_21250 0.75 +0.2
114,070 + CA264_21250 0.76 +1.3
114,071 - CA264_21250 0.76 +0.1
114,071 - CA264_21250 0.76 -0.1
114,072 + CA264_21250 0.76 +1.2
114,073 - CA264_21250 0.77 -0.1
114,073 - CA264_21250 0.77 +1.8
114,119 + CA264_21250 0.87 +2.1
114,139 - +0.6
114,186 + +2.7
114,225 + +1.5
114,235 + +2.0
114,235 + +2.6
114,236 - -0.4
114,238 + +2.6
114,238 + +2.1
114,239 - +0.2
114,299 + -0.4
114,351 + +2.8
114,422 + +3.2
114,422 + +3.6
114,423 - +0.6
114,423 - -0.3
114,427 - +0.7
114,461 + +3.2
114,461 + +3.9
114,462 - +1.1
114,490 + +4.0
114,490 + +3.0
114,491 - +1.5
114,491 - +0.4
114,493 + +3.7
114,494 - -0.8
114,498 - +0.3
114,522 + +3.1
114,526 + +3.6
114,526 + +3.1
114,528 + +1.5
114,528 + +3.4
114,544 + +3.2
114,545 - -0.7
114,547 - +5.7
114,571 + +4.3
114,580 + +3.7
114,580 + +3.5
114,581 - +0.9
114,581 - +1.1
114,581 - +1.5
114,611 + +3.6
114,611 + +3.8
114,611 + +3.9
114,612 - +0.5
114,612 - +0.3
114,658 - +1.9
114,682 + +1.4
114,682 + +1.3
114,691 + +1.1
114,693 + +1.3
114,694 - +2.8
114,694 - +3.1
114,694 - +2.3
114,694 - +2.4
114,694 - +2.9
114,694 - +2.8
114,697 + +1.1
114,698 - -0.4
114,768 + -1.5
114,768 + -1.5
114,774 + -0.0
114,775 - +0.3
114,793 + CA264_21255 0.11 -2.3
114,847 + CA264_21255 0.25 +0.1
114,847 + CA264_21255 0.25 -2.2
114,848 - CA264_21255 0.26 -1.4
114,889 + CA264_21255 0.36 -1.5
114,919 + CA264_21255 0.44 -1.1
114,920 - CA264_21255 0.44 -1.7
114,985 + CA264_21255 0.61 -2.1
115,030 + CA264_21255 0.73 -0.6
115,102 + -0.8
115,102 + -0.8
115,103 - -1.7
115,106 + -0.1
115,107 - -0.8
115,240 + -0.9
115,241 - +0.3
115,321 + -3.1
115,340 - -1.2
115,473 - -0.3
115,481 - -1.0
115,483 + -0.6
115,484 - -2.4
115,553 + -0.8
115,553 + -2.5
115,553 + -2.3
115,554 - -1.9
115,554 - -2.2
115,555 + -2.0
115,555 + +0.5
115,634 - CA264_21260 0.10 +0.3
115,694 + CA264_21260 0.12 -0.1
115,695 - CA264_21260 0.12 -3.6
115,700 + CA264_21260 0.12 -1.8
115,701 - CA264_21260 0.12 -1.1
115,784 + CA264_21260 0.14 -1.7
115,789 + CA264_21260 0.14 -3.0
115,789 + CA264_21260 0.14 -3.1
115,789 + CA264_21260 0.14 -1.3
115,789 + CA264_21260 0.14 -2.8
115,789 + CA264_21260 0.14 -1.7
115,790 - CA264_21260 0.14 -1.7
115,794 - CA264_21260 0.14 -2.5
115,794 - CA264_21260 0.14 +0.7
115,894 + CA264_21260 0.17 -1.0
115,982 + CA264_21260 0.19 -1.6

Or see this region's nucleotide sequence