Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_20880

Experiment: m.b. copper (II) chloride 0.16 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_20875 and CA264_20880 are separated by 78 nucleotidesCA264_20880 and CA264_20885 are separated by 346 nucleotides CA264_20875: CA264_20875 - resolvase, at 38,004 to 38,693 _20875 CA264_20880: CA264_20880 - hypothetical protein, at 38,772 to 39,953 _20880 CA264_20885: CA264_20885 - T9SS C-terminal target domain-containing protein, at 40,300 to 43,356 _20885 Position (kb) 38 39 40Strain fitness (log2 ratio) -2 -1 0 1 2at 37.781 kb on - strandat 37.781 kb on - strandat 37.840 kb on - strandat 37.922 kb on - strandat 37.983 kb on - strandat 37.984 kb on + strandat 37.986 kb on + strandat 37.986 kb on + strandat 37.986 kb on + strandat 37.990 kb on - strandat 37.990 kb on - strandat 38.010 kb on + strandat 38.170 kb on + strand, within CA264_20875at 38.261 kb on + strand, within CA264_20875at 38.473 kb on + strand, within CA264_20875at 38.556 kb on + strand, within CA264_20875at 38.556 kb on + strand, within CA264_20875at 38.700 kb on + strandat 38.701 kb on - strandat 38.703 kb on - strandat 38.707 kb on - strandat 38.709 kb on - strandat 38.736 kb on + strandat 38.736 kb on + strandat 38.737 kb on - strandat 38.737 kb on - strandat 38.745 kb on + strandat 38.761 kb on - strandat 38.761 kb on - strandat 38.771 kb on + strandat 38.772 kb on - strandat 38.782 kb on + strandat 38.782 kb on + strandat 38.783 kb on - strandat 38.787 kb on - strandat 38.905 kb on + strand, within CA264_20880at 38.912 kb on + strand, within CA264_20880at 39.001 kb on + strand, within CA264_20880at 39.086 kb on + strand, within CA264_20880at 39.100 kb on - strand, within CA264_20880at 39.100 kb on - strand, within CA264_20880at 39.102 kb on - strand, within CA264_20880at 39.105 kb on + strand, within CA264_20880at 39.210 kb on + strand, within CA264_20880at 39.210 kb on + strand, within CA264_20880at 39.221 kb on + strand, within CA264_20880at 39.228 kb on - strand, within CA264_20880at 39.262 kb on - strand, within CA264_20880at 39.329 kb on - strand, within CA264_20880at 39.427 kb on + strand, within CA264_20880at 39.436 kb on - strand, within CA264_20880at 39.479 kb on + strand, within CA264_20880at 39.491 kb on - strand, within CA264_20880at 39.725 kb on + strand, within CA264_20880at 39.726 kb on - strand, within CA264_20880at 39.775 kb on - strand, within CA264_20880at 39.775 kb on - strand, within CA264_20880at 39.822 kb on - strand, within CA264_20880at 39.833 kb on + strand, within CA264_20880at 39.834 kb on - strand, within CA264_20880at 39.966 kb on - strandat 39.968 kb on + strandat 39.968 kb on + strandat 39.968 kb on + strandat 39.968 kb on + strandat 39.968 kb on + strandat 39.979 kb on + strandat 40.040 kb on - strandat 40.040 kb on - strandat 40.041 kb on + strandat 40.041 kb on + strandat 40.042 kb on - strandat 40.052 kb on - strandat 40.075 kb on - strandat 40.083 kb on - strandat 40.293 kb on + strandat 40.293 kb on + strandat 40.294 kb on - strandat 40.297 kb on + strandat 40.306 kb on + strandat 40.336 kb on + strandat 40.363 kb on + strandat 40.370 kb on + strandat 40.435 kb on + strandat 40.435 kb on + strandat 40.436 kb on - strandat 40.466 kb on - strandat 40.473 kb on - strandat 40.479 kb on + strandat 40.523 kb on - strandat 40.529 kb on - strandat 40.559 kb on + strandat 40.560 kb on - strandat 40.560 kb on - strandat 40.560 kb on - strandat 40.565 kb on + strandat 40.565 kb on + strandat 40.565 kb on + strandat 40.566 kb on - strandat 40.566 kb on - strandat 40.566 kb on - strandat 40.655 kb on + strand, within CA264_20885at 40.671 kb on - strand, within CA264_20885at 40.755 kb on - strand, within CA264_20885at 40.878 kb on + strand, within CA264_20885at 40.933 kb on + strand, within CA264_20885at 40.947 kb on + strand, within CA264_20885

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM
remove
37,781 - -0.6
37,781 - +0.7
37,840 - +0.5
37,922 - +0.4
37,983 - +0.2
37,984 + -0.7
37,986 + -2.6
37,986 + -0.5
37,986 + -0.5
37,990 - +0.4
37,990 - +0.3
38,010 + -0.6
38,170 + CA264_20875 0.24 -0.5
38,261 + CA264_20875 0.37 -0.5
38,473 + CA264_20875 0.68 -0.3
38,556 + CA264_20875 0.80 -0.2
38,556 + CA264_20875 0.80 -0.2
38,700 + -0.1
38,701 - -1.1
38,703 - -0.1
38,707 - -0.3
38,709 - -0.5
38,736 + -0.8
38,736 + +0.1
38,737 - +0.1
38,737 - -0.4
38,745 + -0.4
38,761 - +0.1
38,761 - +0.6
38,771 + -0.3
38,772 - -0.6
38,782 + +0.8
38,782 + +1.1
38,783 - -0.5
38,787 - -0.9
38,905 + CA264_20880 0.11 -1.0
38,912 + CA264_20880 0.12 +0.2
39,001 + CA264_20880 0.19 -0.0
39,086 + CA264_20880 0.27 -1.2
39,100 - CA264_20880 0.28 +0.6
39,100 - CA264_20880 0.28 +0.4
39,102 - CA264_20880 0.28 +1.0
39,105 + CA264_20880 0.28 -0.1
39,210 + CA264_20880 0.37 +0.2
39,210 + CA264_20880 0.37 -0.1
39,221 + CA264_20880 0.38 -0.8
39,228 - CA264_20880 0.39 +0.5
39,262 - CA264_20880 0.41 -0.5
39,329 - CA264_20880 0.47 +0.6
39,427 + CA264_20880 0.55 -0.4
39,436 - CA264_20880 0.56 +0.1
39,479 + CA264_20880 0.60 -0.6
39,491 - CA264_20880 0.61 +0.7
39,725 + CA264_20880 0.81 +1.8
39,726 - CA264_20880 0.81 -0.2
39,775 - CA264_20880 0.85 +0.5
39,775 - CA264_20880 0.85 +0.6
39,822 - CA264_20880 0.89 +0.2
39,833 + CA264_20880 0.90 -0.0
39,834 - CA264_20880 0.90 +1.0
39,966 - -0.0
39,968 + -0.2
39,968 + -0.3
39,968 + -0.1
39,968 + -0.0
39,968 + +0.1
39,979 + -0.8
40,040 - -0.0
40,040 - -1.2
40,041 + -0.3
40,041 + -0.4
40,042 - +0.4
40,052 - -0.7
40,075 - -0.4
40,083 - -0.2
40,293 + -0.9
40,293 + -1.7
40,294 - +1.2
40,297 + +0.4
40,306 + +1.2
40,336 + -0.1
40,363 + +1.1
40,370 + +0.1
40,435 + +2.2
40,435 + +0.8
40,436 - +0.9
40,466 - -1.2
40,473 - -1.4
40,479 + -1.0
40,523 - -1.0
40,529 - -0.1
40,559 + -0.0
40,560 - +0.3
40,560 - -0.3
40,560 - -0.3
40,565 + +1.2
40,565 + -0.7
40,565 + +0.1
40,566 - +1.4
40,566 - -0.2
40,566 - +0.1
40,655 + CA264_20885 0.12 +0.7
40,671 - CA264_20885 0.12 -0.6
40,755 - CA264_20885 0.15 -0.4
40,878 + CA264_20885 0.19 +0.8
40,933 + CA264_20885 0.21 +0.9
40,947 + CA264_20885 0.21 +0.5

Or see this region's nucleotide sequence