Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_19675

Experiment: m.b. copper (II) chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_19670 and CA264_19675 are separated by 93 nucleotidesCA264_19675 and CA264_19680 are separated by 185 nucleotides CA264_19670: CA264_19670 - NADPH:quinone oxidoreductase, at 4,541,588 to 4,542,568 _19670 CA264_19675: CA264_19675 - RNA pseudouridine synthase, at 4,542,662 to 4,543,372 _19675 CA264_19680: CA264_19680 - two-component sensor histidine kinase, at 4,543,558 to 4,544,598 _19680 Position (kb) 4542 4543 4544Strain fitness (log2 ratio) -3 -2 -1 0 1at 4541.682 kb on + strandat 4541.683 kb on - strandat 4541.688 kb on + strand, within CA264_19670at 4541.689 kb on - strand, within CA264_19670at 4541.766 kb on + strand, within CA264_19670at 4541.767 kb on - strand, within CA264_19670at 4541.767 kb on - strand, within CA264_19670at 4541.767 kb on - strand, within CA264_19670at 4541.808 kb on + strand, within CA264_19670at 4541.809 kb on - strand, within CA264_19670at 4541.815 kb on + strand, within CA264_19670at 4541.836 kb on + strand, within CA264_19670at 4541.841 kb on + strand, within CA264_19670at 4541.842 kb on - strand, within CA264_19670at 4541.887 kb on - strand, within CA264_19670at 4542.022 kb on - strand, within CA264_19670at 4542.042 kb on + strand, within CA264_19670at 4542.405 kb on + strand, within CA264_19670at 4542.485 kb on + strandat 4542.820 kb on + strand, within CA264_19675at 4542.821 kb on - strand, within CA264_19675at 4542.847 kb on - strand, within CA264_19675at 4542.865 kb on - strand, within CA264_19675at 4542.865 kb on - strand, within CA264_19675at 4542.872 kb on - strand, within CA264_19675at 4542.879 kb on - strand, within CA264_19675at 4542.887 kb on - strand, within CA264_19675at 4542.985 kb on + strand, within CA264_19675at 4542.985 kb on + strand, within CA264_19675at 4542.985 kb on + strand, within CA264_19675at 4543.107 kb on + strand, within CA264_19675at 4543.248 kb on - strand, within CA264_19675at 4543.292 kb on - strand, within CA264_19675at 4543.323 kb on + strandat 4543.341 kb on - strandat 4543.365 kb on + strandat 4543.365 kb on + strandat 4543.380 kb on + strandat 4543.381 kb on - strandat 4543.387 kb on + strandat 4543.430 kb on + strandat 4543.532 kb on + strandat 4543.560 kb on - strandat 4543.560 kb on - strandat 4543.940 kb on - strand, within CA264_19680at 4544.247 kb on + strand, within CA264_19680at 4544.248 kb on - strand, within CA264_19680at 4544.367 kb on + strand, within CA264_19680

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM
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4,541,682 + -0.9
4,541,683 - +0.6
4,541,688 + CA264_19670 0.10 +0.2
4,541,689 - CA264_19670 0.10 -1.0
4,541,766 + CA264_19670 0.18 -1.0
4,541,767 - CA264_19670 0.18 -0.4
4,541,767 - CA264_19670 0.18 -1.0
4,541,767 - CA264_19670 0.18 +0.2
4,541,808 + CA264_19670 0.22 +0.5
4,541,809 - CA264_19670 0.23 -0.3
4,541,815 + CA264_19670 0.23 -0.9
4,541,836 + CA264_19670 0.25 -1.1
4,541,841 + CA264_19670 0.26 -0.5
4,541,842 - CA264_19670 0.26 +0.6
4,541,887 - CA264_19670 0.30 +0.3
4,542,022 - CA264_19670 0.44 +0.1
4,542,042 + CA264_19670 0.46 -0.4
4,542,405 + CA264_19670 0.83 +1.3
4,542,485 + -0.3
4,542,820 + CA264_19675 0.22 -3.5
4,542,821 - CA264_19675 0.22 -1.4
4,542,847 - CA264_19675 0.26 -2.0
4,542,865 - CA264_19675 0.29 -2.6
4,542,865 - CA264_19675 0.29 +0.5
4,542,872 - CA264_19675 0.30 -1.6
4,542,879 - CA264_19675 0.31 -3.3
4,542,887 - CA264_19675 0.32 -1.7
4,542,985 + CA264_19675 0.45 -0.4
4,542,985 + CA264_19675 0.45 -2.1
4,542,985 + CA264_19675 0.45 -3.3
4,543,107 + CA264_19675 0.63 -1.4
4,543,248 - CA264_19675 0.82 -3.2
4,543,292 - CA264_19675 0.89 +0.9
4,543,323 + -1.7
4,543,341 - -2.5
4,543,365 + -2.4
4,543,365 + +0.3
4,543,380 + -0.2
4,543,381 - +0.1
4,543,387 + -0.7
4,543,430 + -0.5
4,543,532 + -0.1
4,543,560 - -0.5
4,543,560 - -0.4
4,543,940 - CA264_19680 0.37 -0.0
4,544,247 + CA264_19680 0.66 -0.2
4,544,248 - CA264_19680 0.66 -1.6
4,544,367 + CA264_19680 0.78 +0.6

Or see this region's nucleotide sequence