Experiment: m.b. copper (II) chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_19185 and CA264_19190 are separated by 130 nucleotides CA264_19190 and CA264_19195 are separated by 29 nucleotides CA264_19195 and CA264_19200 are separated by 287 nucleotides
CA264_19185: CA264_19185 - adenosylhomocysteinase, at 4,455,956 to 4,457,263
_19185
CA264_19190: CA264_19190 - DNA-binding response regulator, at 4,457,394 to 4,458,140
_19190
CA264_19195: CA264_19195 - hypothetical protein, at 4,458,170 to 4,461,142
_19195
CA264_19200: CA264_19200 - glycosyl transferase, at 4,461,430 to 4,462,200
_19200
Position (kb)
4458
4459
4460
4461
4462 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4457.262 kb on - strand at 4457.284 kb on + strand at 4457.369 kb on + strand at 4457.381 kb on + strand at 4457.381 kb on + strand at 4457.381 kb on + strand at 4457.382 kb on - strand at 4457.397 kb on + strand at 4457.397 kb on + strand at 4457.399 kb on + strand at 4457.399 kb on + strand at 4457.399 kb on + strand at 4457.400 kb on - strand at 4457.400 kb on - strand at 4457.411 kb on + strand at 4457.411 kb on + strand at 4457.412 kb on - strand at 4457.431 kb on + strand at 4457.432 kb on - strand at 4457.432 kb on - strand at 4457.493 kb on + strand, within CA264_19190 at 4457.494 kb on - strand, within CA264_19190 at 4457.494 kb on - strand, within CA264_19190 at 4457.494 kb on - strand, within CA264_19190 at 4457.555 kb on + strand, within CA264_19190 at 4457.555 kb on + strand, within CA264_19190 at 4457.555 kb on + strand, within CA264_19190 at 4457.555 kb on + strand, within CA264_19190 at 4457.555 kb on + strand, within CA264_19190 at 4457.556 kb on - strand, within CA264_19190 at 4457.556 kb on - strand, within CA264_19190 at 4457.583 kb on + strand, within CA264_19190 at 4457.584 kb on - strand, within CA264_19190 at 4457.590 kb on + strand, within CA264_19190 at 4457.591 kb on - strand, within CA264_19190 at 4457.612 kb on + strand, within CA264_19190 at 4457.620 kb on + strand, within CA264_19190 at 4457.620 kb on + strand, within CA264_19190 at 4457.682 kb on + strand, within CA264_19190 at 4457.698 kb on + strand, within CA264_19190 at 4457.709 kb on + strand, within CA264_19190 at 4457.769 kb on - strand, within CA264_19190 at 4457.902 kb on + strand, within CA264_19190 at 4457.903 kb on - strand, within CA264_19190 at 4457.907 kb on - strand, within CA264_19190 at 4457.975 kb on + strand, within CA264_19190 at 4457.976 kb on - strand, within CA264_19190 at 4458.021 kb on + strand, within CA264_19190 at 4458.022 kb on - strand, within CA264_19190 at 4458.022 kb on - strand, within CA264_19190 at 4458.022 kb on - strand, within CA264_19190 at 4458.022 kb on - strand, within CA264_19190 at 4458.023 kb on + strand, within CA264_19190 at 4458.023 kb on + strand, within CA264_19190 at 4458.023 kb on + strand, within CA264_19190 at 4458.024 kb on - strand, within CA264_19190 at 4458.024 kb on - strand, within CA264_19190 at 4458.042 kb on + strand, within CA264_19190 at 4458.043 kb on - strand, within CA264_19190 at 4458.043 kb on - strand, within CA264_19190 at 4458.147 kb on - strand at 4458.261 kb on - strand at 4458.263 kb on + strand at 4458.264 kb on - strand at 4458.269 kb on - strand at 4458.351 kb on + strand at 4458.418 kb on - strand at 4458.438 kb on - strand at 4458.476 kb on + strand, within CA264_19195 at 4458.477 kb on - strand, within CA264_19195 at 4458.477 kb on - strand, within CA264_19195 at 4458.488 kb on + strand, within CA264_19195 at 4458.526 kb on + strand, within CA264_19195 at 4458.527 kb on - strand, within CA264_19195 at 4458.537 kb on + strand, within CA264_19195 at 4458.574 kb on - strand, within CA264_19195 at 4458.590 kb on - strand, within CA264_19195 at 4458.637 kb on + strand, within CA264_19195 at 4458.668 kb on + strand, within CA264_19195 at 4458.668 kb on + strand, within CA264_19195 at 4458.668 kb on + strand, within CA264_19195 at 4458.668 kb on + strand, within CA264_19195 at 4458.669 kb on - strand, within CA264_19195 at 4458.922 kb on + strand, within CA264_19195 at 4458.923 kb on - strand, within CA264_19195 at 4458.966 kb on + strand, within CA264_19195 at 4459.111 kb on - strand, within CA264_19195 at 4459.111 kb on - strand, within CA264_19195 at 4459.111 kb on - strand, within CA264_19195 at 4459.111 kb on - strand, within CA264_19195 at 4459.114 kb on + strand, within CA264_19195 at 4459.114 kb on + strand, within CA264_19195 at 4459.117 kb on - strand, within CA264_19195 at 4459.117 kb on - strand, within CA264_19195 at 4459.122 kb on - strand, within CA264_19195 at 4459.148 kb on - strand, within CA264_19195 at 4459.225 kb on - strand, within CA264_19195 at 4459.225 kb on - strand, within CA264_19195 at 4459.264 kb on - strand, within CA264_19195 at 4459.272 kb on - strand, within CA264_19195 at 4459.397 kb on + strand, within CA264_19195 at 4459.544 kb on - strand, within CA264_19195 at 4459.606 kb on + strand, within CA264_19195 at 4459.606 kb on + strand, within CA264_19195 at 4459.607 kb on - strand, within CA264_19195 at 4459.636 kb on - strand, within CA264_19195 at 4459.712 kb on + strand, within CA264_19195 at 4459.713 kb on - strand, within CA264_19195 at 4459.713 kb on - strand, within CA264_19195 at 4459.786 kb on + strand, within CA264_19195 at 4459.901 kb on - strand, within CA264_19195 at 4459.908 kb on + strand, within CA264_19195 at 4459.909 kb on - strand, within CA264_19195 at 4459.945 kb on - strand, within CA264_19195 at 4460.212 kb on + strand, within CA264_19195 at 4460.212 kb on + strand, within CA264_19195 at 4460.213 kb on - strand, within CA264_19195 at 4460.213 kb on - strand, within CA264_19195 at 4460.213 kb on - strand, within CA264_19195 at 4460.213 kb on - strand, within CA264_19195 at 4460.213 kb on - strand, within CA264_19195 at 4460.250 kb on - strand, within CA264_19195 at 4460.250 kb on - strand, within CA264_19195 at 4460.250 kb on - strand, within CA264_19195 at 4460.317 kb on + strand, within CA264_19195 at 4460.317 kb on + strand, within CA264_19195 at 4460.317 kb on + strand, within CA264_19195 at 4460.318 kb on - strand, within CA264_19195 at 4460.318 kb on - strand, within CA264_19195 at 4460.338 kb on + strand, within CA264_19195 at 4460.338 kb on + strand, within CA264_19195 at 4460.340 kb on + strand, within CA264_19195 at 4460.341 kb on - strand, within CA264_19195 at 4460.380 kb on + strand, within CA264_19195 at 4460.380 kb on + strand, within CA264_19195 at 4460.383 kb on + strand, within CA264_19195 at 4460.384 kb on - strand, within CA264_19195 at 4460.385 kb on + strand, within CA264_19195 at 4460.385 kb on + strand, within CA264_19195 at 4460.386 kb on - strand, within CA264_19195 at 4460.386 kb on - strand, within CA264_19195 at 4460.386 kb on - strand, within CA264_19195 at 4460.410 kb on + strand, within CA264_19195 at 4460.498 kb on + strand, within CA264_19195 at 4460.598 kb on + strand, within CA264_19195 at 4460.662 kb on - strand, within CA264_19195 at 4460.685 kb on + strand, within CA264_19195 at 4460.766 kb on - strand, within CA264_19195 at 4460.933 kb on - strand at 4460.934 kb on + strand at 4460.934 kb on + strand at 4460.935 kb on - strand at 4460.935 kb on - strand at 4460.935 kb on - strand at 4461.014 kb on + strand at 4461.014 kb on + strand at 4461.014 kb on + strand at 4461.015 kb on - strand at 4461.062 kb on - strand at 4461.072 kb on + strand at 4461.072 kb on + strand at 4461.073 kb on - strand at 4461.073 kb on - strand at 4461.113 kb on + strand at 4461.113 kb on + strand at 4461.213 kb on - strand at 4461.244 kb on + strand at 4461.247 kb on - strand at 4461.293 kb on + strand at 4461.293 kb on + strand at 4461.312 kb on - strand at 4461.396 kb on - strand at 4461.411 kb on + strand at 4461.415 kb on - strand at 4461.415 kb on - strand at 4461.417 kb on + strand at 4461.429 kb on + strand at 4461.438 kb on - strand at 4461.477 kb on + strand at 4461.534 kb on - strand, within CA264_19200 at 4461.556 kb on - strand, within CA264_19200 at 4461.617 kb on + strand, within CA264_19200 at 4461.617 kb on + strand, within CA264_19200 at 4461.618 kb on - strand, within CA264_19200 at 4461.631 kb on + strand, within CA264_19200 at 4461.631 kb on + strand, within CA264_19200 at 4461.632 kb on - strand, within CA264_19200 at 4461.632 kb on - strand, within CA264_19200 at 4461.632 kb on - strand, within CA264_19200 at 4461.632 kb on - strand, within CA264_19200 at 4461.753 kb on + strand, within CA264_19200 at 4461.753 kb on + strand, within CA264_19200 at 4461.754 kb on - strand, within CA264_19200 at 4461.874 kb on - strand, within CA264_19200 at 4461.874 kb on - strand, within CA264_19200 at 4461.931 kb on + strand, within CA264_19200 at 4461.938 kb on - strand, within CA264_19200 at 4461.940 kb on + strand, within CA264_19200 at 4461.968 kb on + strand, within CA264_19200 at 4461.969 kb on - strand, within CA264_19200 at 4461.993 kb on + strand, within CA264_19200 at 4462.037 kb on + strand, within CA264_19200 at 4462.037 kb on + strand, within CA264_19200 at 4462.072 kb on + strand, within CA264_19200 at 4462.079 kb on + strand, within CA264_19200 at 4462.114 kb on - strand, within CA264_19200
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM remove 4,457,262 - +0.4 4,457,284 + -1.3 4,457,369 + +0.4 4,457,381 + +0.1 4,457,381 + +0.1 4,457,381 + +0.5 4,457,382 - -0.3 4,457,397 + -0.6 4,457,397 + -0.4 4,457,399 + +0.5 4,457,399 + -0.1 4,457,399 + -0.2 4,457,400 - -0.6 4,457,400 - -0.8 4,457,411 + -0.0 4,457,411 + -0.4 4,457,412 - -0.2 4,457,431 + +0.3 4,457,432 - +0.7 4,457,432 - +0.2 4,457,493 + CA264_19190 0.13 +0.3 4,457,494 - CA264_19190 0.13 -0.5 4,457,494 - CA264_19190 0.13 +0.5 4,457,494 - CA264_19190 0.13 -0.3 4,457,555 + CA264_19190 0.22 -1.0 4,457,555 + CA264_19190 0.22 +0.0 4,457,555 + CA264_19190 0.22 +0.9 4,457,555 + CA264_19190 0.22 -0.8 4,457,555 + CA264_19190 0.22 -0.1 4,457,556 - CA264_19190 0.22 -0.4 4,457,556 - CA264_19190 0.22 -0.0 4,457,583 + CA264_19190 0.25 -1.2 4,457,584 - CA264_19190 0.25 -0.1 4,457,590 + CA264_19190 0.26 +0.6 4,457,591 - CA264_19190 0.26 -0.3 4,457,612 + CA264_19190 0.29 -0.6 4,457,620 + CA264_19190 0.30 -0.3 4,457,620 + CA264_19190 0.30 +0.6 4,457,682 + CA264_19190 0.39 -0.6 4,457,698 + CA264_19190 0.41 -1.0 4,457,709 + CA264_19190 0.42 -0.0 4,457,769 - CA264_19190 0.50 -0.5 4,457,902 + CA264_19190 0.68 -0.7 4,457,903 - CA264_19190 0.68 +0.4 4,457,907 - CA264_19190 0.69 +0.9 4,457,975 + CA264_19190 0.78 +0.7 4,457,976 - CA264_19190 0.78 -0.6 4,458,021 + CA264_19190 0.84 +0.2 4,458,022 - CA264_19190 0.84 -0.1 4,458,022 - CA264_19190 0.84 -0.2 4,458,022 - CA264_19190 0.84 -1.2 4,458,022 - CA264_19190 0.84 -0.3 4,458,023 + CA264_19190 0.84 +0.9 4,458,023 + CA264_19190 0.84 -0.0 4,458,023 + CA264_19190 0.84 -0.1 4,458,024 - CA264_19190 0.84 -0.7 4,458,024 - CA264_19190 0.84 +0.2 4,458,042 + CA264_19190 0.87 -0.5 4,458,043 - CA264_19190 0.87 +1.6 4,458,043 - CA264_19190 0.87 +2.5 4,458,147 - +0.2 4,458,261 - +0.6 4,458,263 + +0.8 4,458,264 - +0.5 4,458,269 - -2.1 4,458,351 + +0.5 4,458,418 - +0.0 4,458,438 - +0.0 4,458,476 + CA264_19195 0.10 -0.4 4,458,477 - CA264_19195 0.10 +0.5 4,458,477 - CA264_19195 0.10 +1.3 4,458,488 + CA264_19195 0.11 +0.2 4,458,526 + CA264_19195 0.12 -0.1 4,458,527 - CA264_19195 0.12 -0.4 4,458,537 + CA264_19195 0.12 +0.1 4,458,574 - CA264_19195 0.14 -0.9 4,458,590 - CA264_19195 0.14 +0.5 4,458,637 + CA264_19195 0.16 +0.2 4,458,668 + CA264_19195 0.17 +0.5 4,458,668 + CA264_19195 0.17 +0.1 4,458,668 + CA264_19195 0.17 +0.7 4,458,668 + CA264_19195 0.17 +0.3 4,458,669 - CA264_19195 0.17 -1.1 4,458,922 + CA264_19195 0.25 -0.4 4,458,923 - CA264_19195 0.25 +1.3 4,458,966 + CA264_19195 0.27 +0.2 4,459,111 - CA264_19195 0.32 +0.0 4,459,111 - CA264_19195 0.32 -0.0 4,459,111 - CA264_19195 0.32 -0.3 4,459,111 - CA264_19195 0.32 -0.2 4,459,114 + CA264_19195 0.32 -0.6 4,459,114 + CA264_19195 0.32 +0.1 4,459,117 - CA264_19195 0.32 +0.4 4,459,117 - CA264_19195 0.32 +0.1 4,459,122 - CA264_19195 0.32 -1.1 4,459,148 - CA264_19195 0.33 -0.0 4,459,225 - CA264_19195 0.35 -0.0 4,459,225 - CA264_19195 0.35 +0.9 4,459,264 - CA264_19195 0.37 +1.1 4,459,272 - CA264_19195 0.37 +0.6 4,459,397 + CA264_19195 0.41 -0.2 4,459,544 - CA264_19195 0.46 +0.7 4,459,606 + CA264_19195 0.48 -0.2 4,459,606 + CA264_19195 0.48 -0.9 4,459,607 - CA264_19195 0.48 -0.7 4,459,636 - CA264_19195 0.49 -0.9 4,459,712 + CA264_19195 0.52 +0.2 4,459,713 - CA264_19195 0.52 +0.6 4,459,713 - CA264_19195 0.52 +1.0 4,459,786 + CA264_19195 0.54 +1.2 4,459,901 - CA264_19195 0.58 +0.2 4,459,908 + CA264_19195 0.58 +0.2 4,459,909 - CA264_19195 0.58 -0.1 4,459,945 - CA264_19195 0.60 +0.6 4,460,212 + CA264_19195 0.69 +0.1 4,460,212 + CA264_19195 0.69 -0.1 4,460,213 - CA264_19195 0.69 +0.3 4,460,213 - CA264_19195 0.69 -1.5 4,460,213 - CA264_19195 0.69 +0.4 4,460,213 - CA264_19195 0.69 +0.3 4,460,213 - CA264_19195 0.69 +0.9 4,460,250 - CA264_19195 0.70 +1.8 4,460,250 - CA264_19195 0.70 +1.6 4,460,250 - CA264_19195 0.70 +0.5 4,460,317 + CA264_19195 0.72 -0.5 4,460,317 + CA264_19195 0.72 +0.3 4,460,317 + CA264_19195 0.72 +0.6 4,460,318 - CA264_19195 0.72 +1.3 4,460,318 - CA264_19195 0.72 -0.2 4,460,338 + CA264_19195 0.73 +1.2 4,460,338 + CA264_19195 0.73 +0.1 4,460,340 + CA264_19195 0.73 -0.1 4,460,341 - CA264_19195 0.73 +0.7 4,460,380 + CA264_19195 0.74 +0.3 4,460,380 + CA264_19195 0.74 +0.8 4,460,383 + CA264_19195 0.74 +1.9 4,460,384 - CA264_19195 0.74 +0.5 4,460,385 + CA264_19195 0.75 +0.3 4,460,385 + CA264_19195 0.75 +0.2 4,460,386 - CA264_19195 0.75 +0.2 4,460,386 - CA264_19195 0.75 +0.7 4,460,386 - CA264_19195 0.75 +0.4 4,460,410 + CA264_19195 0.75 +0.6 4,460,498 + CA264_19195 0.78 +0.0 4,460,598 + CA264_19195 0.82 -0.6 4,460,662 - CA264_19195 0.84 -0.1 4,460,685 + CA264_19195 0.85 +0.1 4,460,766 - CA264_19195 0.87 +0.3 4,460,933 - +1.1 4,460,934 + +0.1 4,460,934 + -0.4 4,460,935 - +0.9 4,460,935 - +0.4 4,460,935 - +1.3 4,461,014 + -0.2 4,461,014 + +0.2 4,461,014 + +0.1 4,461,015 - +0.2 4,461,062 - +0.1 4,461,072 + -0.4 4,461,072 + -0.5 4,461,073 - +0.0 4,461,073 - +0.3 4,461,113 + +0.7 4,461,113 + -1.2 4,461,213 - +1.1 4,461,244 + +2.3 4,461,247 - +0.2 4,461,293 + -1.3 4,461,293 + +0.5 4,461,312 - +0.9 4,461,396 - +0.7 4,461,411 + -0.3 4,461,415 - +0.5 4,461,415 - +0.2 4,461,417 + +0.2 4,461,429 + -1.5 4,461,438 - +0.5 4,461,477 + -4.5 4,461,534 - CA264_19200 0.13 +0.5 4,461,556 - CA264_19200 0.16 -3.2 4,461,617 + CA264_19200 0.24 -0.5 4,461,617 + CA264_19200 0.24 -1.3 4,461,618 - CA264_19200 0.24 +1.3 4,461,631 + CA264_19200 0.26 -0.1 4,461,631 + CA264_19200 0.26 -0.1 4,461,632 - CA264_19200 0.26 -3.1 4,461,632 - CA264_19200 0.26 -1.2 4,461,632 - CA264_19200 0.26 -2.4 4,461,632 - CA264_19200 0.26 +0.2 4,461,753 + CA264_19200 0.42 -2.2 4,461,753 + CA264_19200 0.42 -1.6 4,461,754 - CA264_19200 0.42 -1.0 4,461,874 - CA264_19200 0.58 -2.9 4,461,874 - CA264_19200 0.58 -0.6 4,461,931 + CA264_19200 0.65 -0.8 4,461,938 - CA264_19200 0.66 -4.0 4,461,940 + CA264_19200 0.66 -1.4 4,461,968 + CA264_19200 0.70 -0.1 4,461,969 - CA264_19200 0.70 -0.3 4,461,993 + CA264_19200 0.73 -1.1 4,462,037 + CA264_19200 0.79 -2.4 4,462,037 + CA264_19200 0.79 -3.2 4,462,072 + CA264_19200 0.83 -2.4 4,462,079 + CA264_19200 0.84 -1.5 4,462,114 - CA264_19200 0.89 -3.7
Or see this region's nucleotide sequence