Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18855

Experiment: m.b. copper (II) chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_18850 and CA264_18855 are separated by 392 nucleotidesCA264_18855 and CA264_18860 are separated by 132 nucleotides CA264_18850: CA264_18850 - 1-deoxy-D-xylulose-5-phosphate synthase, at 4,374,311 to 4,376,227 _18850 CA264_18855: CA264_18855 - chromosome segregation protein ScpA, at 4,376,620 to 4,377,366 _18855 CA264_18860: CA264_18860 - TIGR00374 family protein, at 4,377,499 to 4,378,560 _18860 Position (kb) 4376 4377 4378Strain fitness (log2 ratio) -1 0 1 2 3at 4376.240 kb on - strandat 4376.241 kb on + strandat 4376.242 kb on - strandat 4376.242 kb on - strandat 4376.273 kb on + strandat 4376.277 kb on + strandat 4376.315 kb on + strandat 4376.359 kb on - strandat 4376.364 kb on + strandat 4376.373 kb on + strandat 4376.374 kb on - strandat 4376.375 kb on + strandat 4376.382 kb on - strandat 4376.382 kb on - strandat 4376.382 kb on - strandat 4376.382 kb on - strandat 4376.385 kb on + strandat 4376.386 kb on - strandat 4376.386 kb on - strandat 4376.386 kb on - strandat 4376.386 kb on - strandat 4376.387 kb on + strandat 4376.392 kb on - strandat 4376.456 kb on - strandat 4376.460 kb on - strandat 4376.460 kb on - strandat 4376.484 kb on + strandat 4376.578 kb on + strandat 4376.580 kb on + strandat 4376.592 kb on + strandat 4376.770 kb on - strand, within CA264_18855at 4376.775 kb on + strand, within CA264_18855at 4376.899 kb on + strand, within CA264_18855at 4376.970 kb on - strand, within CA264_18855at 4377.046 kb on - strand, within CA264_18855at 4377.119 kb on - strand, within CA264_18855at 4377.365 kb on - strandat 4377.418 kb on - strandat 4377.421 kb on + strandat 4377.425 kb on - strandat 4377.465 kb on - strandat 4377.496 kb on + strandat 4377.496 kb on + strandat 4377.497 kb on - strandat 4377.497 kb on - strandat 4377.497 kb on - strandat 4377.497 kb on - strandat 4377.573 kb on - strandat 4377.611 kb on + strand, within CA264_18860at 4377.694 kb on + strand, within CA264_18860at 4377.694 kb on + strand, within CA264_18860at 4377.694 kb on + strand, within CA264_18860at 4377.695 kb on - strandat 4377.696 kb on + strand, within CA264_18860at 4377.696 kb on + strand, within CA264_18860at 4377.697 kb on - strand, within CA264_18860at 4377.868 kb on + strand, within CA264_18860at 4377.869 kb on - strand, within CA264_18860at 4377.869 kb on - strand, within CA264_18860at 4377.869 kb on - strand, within CA264_18860at 4377.906 kb on + strand, within CA264_18860at 4377.906 kb on + strand, within CA264_18860at 4378.007 kb on - strand, within CA264_18860at 4378.011 kb on + strand, within CA264_18860at 4378.012 kb on - strand, within CA264_18860at 4378.012 kb on - strand, within CA264_18860at 4378.016 kb on - strand, within CA264_18860at 4378.016 kb on - strand, within CA264_18860at 4378.016 kb on - strand, within CA264_18860at 4378.026 kb on + strand, within CA264_18860at 4378.026 kb on + strand, within CA264_18860at 4378.027 kb on - strand, within CA264_18860at 4378.027 kb on - strand, within CA264_18860at 4378.027 kb on - strand, within CA264_18860at 4378.033 kb on + strand, within CA264_18860at 4378.035 kb on + strand, within CA264_18860at 4378.035 kb on + strand, within CA264_18860at 4378.035 kb on + strand, within CA264_18860at 4378.036 kb on - strand, within CA264_18860at 4378.051 kb on + strand, within CA264_18860at 4378.052 kb on - strand, within CA264_18860at 4378.052 kb on - strand, within CA264_18860at 4378.052 kb on - strand, within CA264_18860at 4378.052 kb on - strand, within CA264_18860at 4378.052 kb on - strand, within CA264_18860at 4378.052 kb on - strand, within CA264_18860at 4378.052 kb on - strand, within CA264_18860at 4378.197 kb on + strand, within CA264_18860at 4378.198 kb on - strand, within CA264_18860at 4378.198 kb on - strand, within CA264_18860at 4378.202 kb on - strand, within CA264_18860at 4378.249 kb on + strand, within CA264_18860

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM
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4,376,240 - -0.7
4,376,241 + +0.6
4,376,242 - -1.1
4,376,242 - +0.3
4,376,273 + -1.7
4,376,277 + -1.1
4,376,315 + -1.4
4,376,359 - -0.4
4,376,364 + -1.0
4,376,373 + -0.6
4,376,374 - +0.7
4,376,375 + -0.3
4,376,382 - -0.3
4,376,382 - -1.1
4,376,382 - +1.3
4,376,382 - -0.5
4,376,385 + -1.0
4,376,386 - -0.2
4,376,386 - +0.1
4,376,386 - -1.0
4,376,386 - -1.5
4,376,387 + -0.7
4,376,392 - -0.6
4,376,456 - -0.5
4,376,460 - +0.3
4,376,460 - -0.1
4,376,484 + +0.5
4,376,578 + +1.0
4,376,580 + +0.9
4,376,592 + +0.4
4,376,770 - CA264_18855 0.20 -1.3
4,376,775 + CA264_18855 0.21 -0.3
4,376,899 + CA264_18855 0.37 -1.5
4,376,970 - CA264_18855 0.47 +0.7
4,377,046 - CA264_18855 0.57 -0.1
4,377,119 - CA264_18855 0.67 -0.6
4,377,365 - -0.8
4,377,418 - -0.9
4,377,421 + -0.4
4,377,425 - -0.1
4,377,465 - -0.6
4,377,496 + -0.0
4,377,496 + -0.4
4,377,497 - +1.3
4,377,497 - +1.3
4,377,497 - +0.3
4,377,497 - -0.6
4,377,573 - +1.5
4,377,611 + CA264_18860 0.11 +0.8
4,377,694 + CA264_18860 0.18 +0.7
4,377,694 + CA264_18860 0.18 +1.0
4,377,694 + CA264_18860 0.18 +1.4
4,377,695 - +0.9
4,377,696 + CA264_18860 0.19 -0.3
4,377,696 + CA264_18860 0.19 +1.0
4,377,697 - CA264_18860 0.19 -0.1
4,377,868 + CA264_18860 0.35 +0.4
4,377,869 - CA264_18860 0.35 +1.7
4,377,869 - CA264_18860 0.35 +0.8
4,377,869 - CA264_18860 0.35 +1.7
4,377,906 + CA264_18860 0.38 +0.9
4,377,906 + CA264_18860 0.38 +2.3
4,378,007 - CA264_18860 0.48 +1.7
4,378,011 + CA264_18860 0.48 +0.8
4,378,012 - CA264_18860 0.48 +3.6
4,378,012 - CA264_18860 0.48 +2.0
4,378,016 - CA264_18860 0.49 +1.5
4,378,016 - CA264_18860 0.49 +1.7
4,378,016 - CA264_18860 0.49 +1.7
4,378,026 + CA264_18860 0.50 +1.3
4,378,026 + CA264_18860 0.50 +1.2
4,378,027 - CA264_18860 0.50 +2.2
4,378,027 - CA264_18860 0.50 +0.3
4,378,027 - CA264_18860 0.50 +1.7
4,378,033 + CA264_18860 0.50 +0.6
4,378,035 + CA264_18860 0.50 +1.8
4,378,035 + CA264_18860 0.50 +1.1
4,378,035 + CA264_18860 0.50 +0.4
4,378,036 - CA264_18860 0.51 +0.6
4,378,051 + CA264_18860 0.52 +1.3
4,378,052 - CA264_18860 0.52 +1.5
4,378,052 - CA264_18860 0.52 +0.9
4,378,052 - CA264_18860 0.52 +2.0
4,378,052 - CA264_18860 0.52 +2.0
4,378,052 - CA264_18860 0.52 +0.4
4,378,052 - CA264_18860 0.52 +0.7
4,378,052 - CA264_18860 0.52 +1.3
4,378,197 + CA264_18860 0.66 +0.6
4,378,198 - CA264_18860 0.66 +0.5
4,378,198 - CA264_18860 0.66 +1.4
4,378,202 - CA264_18860 0.66 +1.0
4,378,249 + CA264_18860 0.71 +1.1

Or see this region's nucleotide sequence