Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_18080

Experiment: m.b. copper (II) chloride 0.16 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_18075 and CA264_18080 are separated by 146 nucleotidesCA264_18080 and CA264_18085 are separated by 149 nucleotides CA264_18075: CA264_18075 - 3-dehydro-L-gulonate 2-dehydrogenase, at 4,204,115 to 4,205,119 _18075 CA264_18080: CA264_18080 - hypothetical protein, at 4,205,266 to 4,205,856 _18080 CA264_18085: CA264_18085 - 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase, at 4,206,006 to 4,206,788 _18085 Position (kb) 4205 4206Strain fitness (log2 ratio) -2 -1 0 1 2at 4204.312 kb on + strand, within CA264_18075at 4204.312 kb on + strand, within CA264_18075at 4204.312 kb on + strand, within CA264_18075at 4204.313 kb on - strand, within CA264_18075at 4204.314 kb on + strand, within CA264_18075at 4204.341 kb on + strand, within CA264_18075at 4204.357 kb on - strand, within CA264_18075at 4204.394 kb on + strand, within CA264_18075at 4204.394 kb on + strand, within CA264_18075at 4204.395 kb on - strand, within CA264_18075at 4204.499 kb on + strand, within CA264_18075at 4204.499 kb on + strand, within CA264_18075at 4204.499 kb on + strand, within CA264_18075at 4204.500 kb on - strand, within CA264_18075at 4204.528 kb on + strand, within CA264_18075at 4204.529 kb on - strand, within CA264_18075at 4204.534 kb on + strand, within CA264_18075at 4204.535 kb on - strand, within CA264_18075at 4204.614 kb on + strand, within CA264_18075at 4204.614 kb on + strand, within CA264_18075at 4204.615 kb on - strand, within CA264_18075at 4204.692 kb on - strand, within CA264_18075at 4204.821 kb on + strand, within CA264_18075at 4204.829 kb on - strand, within CA264_18075at 4204.944 kb on + strand, within CA264_18075at 4204.945 kb on - strand, within CA264_18075at 4204.956 kb on + strand, within CA264_18075at 4204.960 kb on + strand, within CA264_18075at 4204.961 kb on - strand, within CA264_18075at 4204.976 kb on + strand, within CA264_18075at 4204.976 kb on + strand, within CA264_18075at 4204.979 kb on - strand, within CA264_18075at 4205.139 kb on + strandat 4205.159 kb on + strandat 4205.165 kb on + strandat 4205.166 kb on - strandat 4205.166 kb on - strandat 4205.184 kb on - strandat 4205.202 kb on - strandat 4205.214 kb on - strandat 4205.216 kb on - strandat 4205.294 kb on - strandat 4205.307 kb on + strandat 4205.307 kb on + strandat 4205.314 kb on + strandat 4205.317 kb on + strandat 4205.318 kb on - strandat 4205.318 kb on - strandat 4205.318 kb on - strandat 4205.397 kb on + strand, within CA264_18080at 4205.397 kb on + strand, within CA264_18080at 4205.397 kb on + strand, within CA264_18080at 4205.398 kb on - strand, within CA264_18080at 4205.421 kb on - strand, within CA264_18080at 4205.421 kb on - strand, within CA264_18080at 4205.627 kb on + strand, within CA264_18080at 4205.627 kb on + strand, within CA264_18080at 4205.628 kb on - strand, within CA264_18080at 4205.628 kb on - strand, within CA264_18080at 4205.794 kb on + strand, within CA264_18080at 4205.851 kb on + strandat 4205.855 kb on - strandat 4205.875 kb on - strandat 4205.982 kb on + strandat 4206.002 kb on - strandat 4206.002 kb on - strandat 4206.012 kb on + strandat 4206.025 kb on + strandat 4206.105 kb on + strand, within CA264_18085at 4206.134 kb on - strand, within CA264_18085at 4206.134 kb on - strand, within CA264_18085at 4206.276 kb on - strand, within CA264_18085at 4206.316 kb on + strand, within CA264_18085at 4206.393 kb on - strand, within CA264_18085at 4206.410 kb on - strand, within CA264_18085at 4206.416 kb on - strand, within CA264_18085at 4206.509 kb on - strand, within CA264_18085at 4206.509 kb on - strand, within CA264_18085at 4206.687 kb on + strand, within CA264_18085at 4206.815 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM
remove
4,204,312 + CA264_18075 0.20 -0.5
4,204,312 + CA264_18075 0.20 +0.9
4,204,312 + CA264_18075 0.20 -0.0
4,204,313 - CA264_18075 0.20 -0.4
4,204,314 + CA264_18075 0.20 -0.5
4,204,341 + CA264_18075 0.22 -2.1
4,204,357 - CA264_18075 0.24 +0.4
4,204,394 + CA264_18075 0.28 +0.9
4,204,394 + CA264_18075 0.28 +0.5
4,204,395 - CA264_18075 0.28 +1.0
4,204,499 + CA264_18075 0.38 +0.2
4,204,499 + CA264_18075 0.38 -1.3
4,204,499 + CA264_18075 0.38 +0.1
4,204,500 - CA264_18075 0.38 +0.6
4,204,528 + CA264_18075 0.41 +1.7
4,204,529 - CA264_18075 0.41 +0.7
4,204,534 + CA264_18075 0.42 +0.9
4,204,535 - CA264_18075 0.42 +1.2
4,204,614 + CA264_18075 0.50 -0.1
4,204,614 + CA264_18075 0.50 +0.6
4,204,615 - CA264_18075 0.50 +0.2
4,204,692 - CA264_18075 0.57 -0.9
4,204,821 + CA264_18075 0.70 -1.6
4,204,829 - CA264_18075 0.71 +1.5
4,204,944 + CA264_18075 0.82 +1.5
4,204,945 - CA264_18075 0.83 +0.8
4,204,956 + CA264_18075 0.84 +0.2
4,204,960 + CA264_18075 0.84 -0.1
4,204,961 - CA264_18075 0.84 +1.7
4,204,976 + CA264_18075 0.86 -1.7
4,204,976 + CA264_18075 0.86 -0.2
4,204,979 - CA264_18075 0.86 +1.5
4,205,139 + -2.0
4,205,159 + -0.4
4,205,165 + +0.4
4,205,166 - +2.0
4,205,166 - +0.1
4,205,184 - +0.4
4,205,202 - +0.3
4,205,214 - +2.2
4,205,216 - +0.6
4,205,294 - -0.2
4,205,307 + -0.7
4,205,307 + -0.6
4,205,314 + -1.0
4,205,317 + -0.8
4,205,318 - -0.2
4,205,318 - +0.1
4,205,318 - +0.5
4,205,397 + CA264_18080 0.22 +2.4
4,205,397 + CA264_18080 0.22 +0.1
4,205,397 + CA264_18080 0.22 -0.2
4,205,398 - CA264_18080 0.22 -0.2
4,205,421 - CA264_18080 0.26 +0.1
4,205,421 - CA264_18080 0.26 -0.3
4,205,627 + CA264_18080 0.61 -0.4
4,205,627 + CA264_18080 0.61 -1.1
4,205,628 - CA264_18080 0.61 -0.4
4,205,628 - CA264_18080 0.61 +0.8
4,205,794 + CA264_18080 0.89 -0.6
4,205,851 + -1.1
4,205,855 - -0.2
4,205,875 - -0.2
4,205,982 + +0.1
4,206,002 - -0.3
4,206,002 - -0.2
4,206,012 + -0.7
4,206,025 + +0.3
4,206,105 + CA264_18085 0.13 -1.0
4,206,134 - CA264_18085 0.16 +0.3
4,206,134 - CA264_18085 0.16 -0.5
4,206,276 - CA264_18085 0.34 -0.1
4,206,316 + CA264_18085 0.40 -0.9
4,206,393 - CA264_18085 0.49 -0.1
4,206,410 - CA264_18085 0.52 -0.1
4,206,416 - CA264_18085 0.52 -0.5
4,206,509 - CA264_18085 0.64 +0.1
4,206,509 - CA264_18085 0.64 +0.3
4,206,687 + CA264_18085 0.87 -0.7
4,206,815 + -0.8

Or see this region's nucleotide sequence