Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17845

Experiment: m.b. copper (II) chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17840 and CA264_17845 are separated by 32 nucleotidesCA264_17845 and CA264_17850 are separated by 90 nucleotides CA264_17840: CA264_17840 - ATP-binding protein, at 4,147,680 to 4,148,861 _17840 CA264_17845: CA264_17845 - GNAT family N-acetyltransferase, at 4,148,894 to 4,149,826 _17845 CA264_17850: CA264_17850 - sodium:proton antiporter, at 4,149,917 to 4,151,887 _17850 Position (kb) 4148 4149 4150Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 4147.943 kb on + strand, within CA264_17840at 4147.955 kb on + strand, within CA264_17840at 4147.967 kb on + strand, within CA264_17840at 4148.315 kb on + strand, within CA264_17840at 4148.496 kb on - strand, within CA264_17840at 4148.522 kb on + strand, within CA264_17840at 4148.523 kb on - strand, within CA264_17840at 4148.526 kb on - strand, within CA264_17840at 4148.536 kb on + strand, within CA264_17840at 4148.613 kb on - strand, within CA264_17840at 4148.803 kb on - strandat 4148.891 kb on + strandat 4148.904 kb on + strandat 4148.904 kb on + strandat 4148.905 kb on - strandat 4148.907 kb on + strandat 4148.927 kb on - strandat 4148.992 kb on + strand, within CA264_17845at 4149.038 kb on + strand, within CA264_17845at 4149.116 kb on + strand, within CA264_17845at 4149.116 kb on + strand, within CA264_17845at 4149.214 kb on + strand, within CA264_17845at 4149.222 kb on - strand, within CA264_17845at 4149.224 kb on - strand, within CA264_17845at 4149.272 kb on + strand, within CA264_17845at 4149.272 kb on + strand, within CA264_17845at 4149.273 kb on - strand, within CA264_17845at 4149.416 kb on + strand, within CA264_17845at 4149.496 kb on - strand, within CA264_17845at 4149.529 kb on + strand, within CA264_17845at 4149.562 kb on - strand, within CA264_17845at 4149.582 kb on - strand, within CA264_17845at 4149.611 kb on + strand, within CA264_17845at 4149.684 kb on + strand, within CA264_17845at 4149.685 kb on - strand, within CA264_17845at 4149.685 kb on - strand, within CA264_17845at 4149.685 kb on - strand, within CA264_17845at 4149.685 kb on - strand, within CA264_17845at 4149.706 kb on + strand, within CA264_17845at 4149.707 kb on - strand, within CA264_17845at 4149.740 kb on + strandat 4149.740 kb on + strandat 4149.777 kb on - strandat 4149.835 kb on + strandat 4149.835 kb on + strandat 4149.836 kb on - strandat 4149.836 kb on - strandat 4149.836 kb on - strandat 4149.872 kb on + strandat 4149.977 kb on + strandat 4149.992 kb on + strandat 4149.992 kb on + strandat 4149.993 kb on - strandat 4150.123 kb on + strand, within CA264_17850at 4150.123 kb on + strand, within CA264_17850at 4150.222 kb on - strand, within CA264_17850at 4150.222 kb on - strand, within CA264_17850at 4150.222 kb on - strand, within CA264_17850at 4150.272 kb on + strand, within CA264_17850at 4150.273 kb on - strand, within CA264_17850at 4150.304 kb on + strand, within CA264_17850at 4150.305 kb on - strand, within CA264_17850at 4150.344 kb on - strand, within CA264_17850at 4150.419 kb on + strand, within CA264_17850at 4150.431 kb on + strand, within CA264_17850at 4150.481 kb on + strand, within CA264_17850at 4150.615 kb on - strand, within CA264_17850at 4150.615 kb on - strand, within CA264_17850

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM
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4,147,943 + CA264_17840 0.22 -6.2
4,147,955 + CA264_17840 0.23 -3.9
4,147,967 + CA264_17840 0.24 -0.4
4,148,315 + CA264_17840 0.54 -1.5
4,148,496 - CA264_17840 0.69 -1.3
4,148,522 + CA264_17840 0.71 -2.3
4,148,523 - CA264_17840 0.71 -1.1
4,148,526 - CA264_17840 0.72 +0.7
4,148,536 + CA264_17840 0.72 -0.4
4,148,613 - CA264_17840 0.79 -2.0
4,148,803 - -4.9
4,148,891 + -1.4
4,148,904 + +0.4
4,148,904 + +0.8
4,148,905 - +0.7
4,148,907 + +0.1
4,148,927 - -0.9
4,148,992 + CA264_17845 0.11 -0.8
4,149,038 + CA264_17845 0.15 +0.5
4,149,116 + CA264_17845 0.24 -0.8
4,149,116 + CA264_17845 0.24 -1.3
4,149,214 + CA264_17845 0.34 -0.4
4,149,222 - CA264_17845 0.35 -0.8
4,149,224 - CA264_17845 0.35 -1.0
4,149,272 + CA264_17845 0.41 -0.6
4,149,272 + CA264_17845 0.41 +0.1
4,149,273 - CA264_17845 0.41 -0.3
4,149,416 + CA264_17845 0.56 -1.0
4,149,496 - CA264_17845 0.65 +1.2
4,149,529 + CA264_17845 0.68 -0.7
4,149,562 - CA264_17845 0.72 +1.1
4,149,582 - CA264_17845 0.74 +0.1
4,149,611 + CA264_17845 0.77 +1.3
4,149,684 + CA264_17845 0.85 -0.5
4,149,685 - CA264_17845 0.85 -1.1
4,149,685 - CA264_17845 0.85 +0.0
4,149,685 - CA264_17845 0.85 +0.4
4,149,685 - CA264_17845 0.85 -0.1
4,149,706 + CA264_17845 0.87 -0.8
4,149,707 - CA264_17845 0.87 +0.4
4,149,740 + -0.8
4,149,740 + -0.2
4,149,777 - -0.0
4,149,835 + -0.5
4,149,835 + -0.8
4,149,836 - -0.1
4,149,836 - -0.1
4,149,836 - +1.3
4,149,872 + +1.2
4,149,977 + -0.4
4,149,992 + -0.1
4,149,992 + +0.7
4,149,993 - +0.8
4,150,123 + CA264_17850 0.10 -0.2
4,150,123 + CA264_17850 0.10 -0.7
4,150,222 - CA264_17850 0.15 -2.4
4,150,222 - CA264_17850 0.15 -0.4
4,150,222 - CA264_17850 0.15 +0.4
4,150,272 + CA264_17850 0.18 -0.1
4,150,273 - CA264_17850 0.18 -0.9
4,150,304 + CA264_17850 0.20 +1.4
4,150,305 - CA264_17850 0.20 +0.7
4,150,344 - CA264_17850 0.22 +2.9
4,150,419 + CA264_17850 0.25 -0.3
4,150,431 + CA264_17850 0.26 +0.0
4,150,481 + CA264_17850 0.29 -0.7
4,150,615 - CA264_17850 0.35 +0.2
4,150,615 - CA264_17850 0.35 -0.6

Or see this region's nucleotide sequence