Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17300

Experiment: m.b. copper (II) chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17300 and CA264_17305 are separated by 202 nucleotidesCA264_17305 and CA264_17310 are separated by 197 nucleotides CA264_17300: CA264_17300 - cation/H(+) antiporter, at 4,027,131 to 4,029,200 _17300 CA264_17305: CA264_17305 - hypothetical protein, at 4,029,403 to 4,029,861 _17305 CA264_17310: CA264_17310 - hypothetical protein, at 4,030,059 to 4,031,195 _17310 Position (kb) 4027 4028 4029 4030Strain fitness (log2 ratio) -1 0 1 2at 4026.141 kb on + strandat 4026.176 kb on - strandat 4026.185 kb on - strandat 4026.215 kb on + strandat 4026.216 kb on - strandat 4026.228 kb on + strandat 4026.229 kb on - strandat 4026.229 kb on - strandat 4026.271 kb on + strandat 4026.409 kb on - strandat 4026.515 kb on - strandat 4026.515 kb on - strandat 4026.531 kb on - strandat 4026.538 kb on + strandat 4026.580 kb on - strandat 4026.580 kb on - strandat 4027.096 kb on - strandat 4027.184 kb on + strandat 4027.298 kb on + strandat 4027.298 kb on + strandat 4027.300 kb on + strandat 4027.322 kb on - strandat 4027.402 kb on - strand, within CA264_17300at 4027.488 kb on + strand, within CA264_17300at 4027.508 kb on - strand, within CA264_17300at 4027.510 kb on + strand, within CA264_17300at 4027.548 kb on + strand, within CA264_17300at 4027.559 kb on + strand, within CA264_17300at 4027.611 kb on - strand, within CA264_17300at 4027.617 kb on - strand, within CA264_17300at 4027.658 kb on + strand, within CA264_17300at 4027.659 kb on - strand, within CA264_17300at 4027.677 kb on - strand, within CA264_17300at 4027.718 kb on + strand, within CA264_17300at 4027.719 kb on - strand, within CA264_17300at 4027.803 kb on + strand, within CA264_17300at 4027.804 kb on - strand, within CA264_17300at 4027.805 kb on + strand, within CA264_17300at 4027.806 kb on - strand, within CA264_17300at 4027.807 kb on + strand, within CA264_17300at 4027.807 kb on + strand, within CA264_17300at 4028.055 kb on - strand, within CA264_17300at 4028.057 kb on + strand, within CA264_17300at 4028.060 kb on + strand, within CA264_17300at 4028.060 kb on + strand, within CA264_17300at 4028.060 kb on + strand, within CA264_17300at 4028.083 kb on - strand, within CA264_17300at 4028.121 kb on - strand, within CA264_17300at 4028.205 kb on - strand, within CA264_17300at 4028.390 kb on - strand, within CA264_17300at 4028.390 kb on - strand, within CA264_17300at 4028.390 kb on - strand, within CA264_17300at 4028.390 kb on - strand, within CA264_17300at 4028.444 kb on + strand, within CA264_17300at 4028.444 kb on + strand, within CA264_17300at 4028.445 kb on - strand, within CA264_17300at 4028.445 kb on - strand, within CA264_17300at 4028.445 kb on - strand, within CA264_17300at 4028.468 kb on - strand, within CA264_17300at 4028.468 kb on - strand, within CA264_17300at 4028.507 kb on + strand, within CA264_17300at 4028.507 kb on + strand, within CA264_17300at 4028.508 kb on - strand, within CA264_17300at 4028.508 kb on - strand, within CA264_17300at 4028.570 kb on + strand, within CA264_17300at 4028.571 kb on - strand, within CA264_17300at 4028.712 kb on - strand, within CA264_17300at 4028.712 kb on - strand, within CA264_17300at 4028.712 kb on - strand, within CA264_17300at 4028.889 kb on - strand, within CA264_17300at 4028.893 kb on + strand, within CA264_17300at 4029.008 kb on + strandat 4029.008 kb on + strandat 4029.009 kb on - strandat 4029.066 kb on + strandat 4029.066 kb on + strandat 4029.067 kb on - strandat 4029.171 kb on + strandat 4029.197 kb on - strandat 4029.197 kb on - strandat 4029.197 kb on - strandat 4029.197 kb on - strandat 4029.250 kb on + strandat 4029.306 kb on + strandat 4029.397 kb on + strandat 4029.397 kb on + strandat 4029.397 kb on + strandat 4029.397 kb on + strandat 4029.398 kb on - strandat 4029.398 kb on - strandat 4029.575 kb on - strand, within CA264_17305at 4029.575 kb on - strand, within CA264_17305at 4029.779 kb on - strand, within CA264_17305at 4029.896 kb on + strandat 4029.898 kb on + strandat 4029.899 kb on - strandat 4029.899 kb on - strandat 4029.899 kb on - strandat 4029.899 kb on - strandat 4029.902 kb on + strandat 4029.902 kb on + strandat 4029.902 kb on + strandat 4029.902 kb on + strandat 4029.903 kb on - strandat 4029.903 kb on - strandat 4029.903 kb on - strandat 4030.002 kb on - strandat 4030.002 kb on - strandat 4030.060 kb on + strandat 4030.081 kb on - strandat 4030.175 kb on + strand, within CA264_17310

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM
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4,026,141 + +0.3
4,026,176 - +0.0
4,026,185 - -0.3
4,026,215 + -0.1
4,026,216 - +0.1
4,026,228 + -0.8
4,026,229 - +0.6
4,026,229 - +0.3
4,026,271 + -0.7
4,026,409 - -1.1
4,026,515 - +0.3
4,026,515 - +0.4
4,026,531 - -0.6
4,026,538 + -0.9
4,026,580 - +0.0
4,026,580 - +0.0
4,027,096 - +0.4
4,027,184 + +1.3
4,027,298 + +0.8
4,027,298 + +0.2
4,027,300 + -1.1
4,027,322 - +0.7
4,027,402 - CA264_17300 0.13 +1.0
4,027,488 + CA264_17300 0.17 -0.2
4,027,508 - CA264_17300 0.18 +0.4
4,027,510 + CA264_17300 0.18 +0.4
4,027,548 + CA264_17300 0.20 +0.6
4,027,559 + CA264_17300 0.21 -0.3
4,027,611 - CA264_17300 0.23 +0.7
4,027,617 - CA264_17300 0.23 -0.1
4,027,658 + CA264_17300 0.25 -0.5
4,027,659 - CA264_17300 0.26 -0.0
4,027,677 - CA264_17300 0.26 +2.0
4,027,718 + CA264_17300 0.28 -0.3
4,027,719 - CA264_17300 0.28 +1.2
4,027,803 + CA264_17300 0.32 -0.7
4,027,804 - CA264_17300 0.33 +1.0
4,027,805 + CA264_17300 0.33 -0.3
4,027,806 - CA264_17300 0.33 +0.6
4,027,807 + CA264_17300 0.33 +0.1
4,027,807 + CA264_17300 0.33 +0.2
4,028,055 - CA264_17300 0.45 +1.3
4,028,057 + CA264_17300 0.45 -0.2
4,028,060 + CA264_17300 0.45 -0.3
4,028,060 + CA264_17300 0.45 -0.9
4,028,060 + CA264_17300 0.45 -1.4
4,028,083 - CA264_17300 0.46 +1.9
4,028,121 - CA264_17300 0.48 -0.1
4,028,205 - CA264_17300 0.52 -0.6
4,028,390 - CA264_17300 0.61 +1.0
4,028,390 - CA264_17300 0.61 +0.6
4,028,390 - CA264_17300 0.61 +0.9
4,028,390 - CA264_17300 0.61 +0.5
4,028,444 + CA264_17300 0.63 +1.0
4,028,444 + CA264_17300 0.63 +2.0
4,028,445 - CA264_17300 0.63 +0.7
4,028,445 - CA264_17300 0.63 +0.4
4,028,445 - CA264_17300 0.63 +0.4
4,028,468 - CA264_17300 0.65 +0.8
4,028,468 - CA264_17300 0.65 -1.2
4,028,507 + CA264_17300 0.66 -0.8
4,028,507 + CA264_17300 0.66 -0.3
4,028,508 - CA264_17300 0.67 +0.2
4,028,508 - CA264_17300 0.67 -0.7
4,028,570 + CA264_17300 0.70 -0.6
4,028,571 - CA264_17300 0.70 +0.9
4,028,712 - CA264_17300 0.76 -0.5
4,028,712 - CA264_17300 0.76 +0.3
4,028,712 - CA264_17300 0.76 +0.7
4,028,889 - CA264_17300 0.85 -0.1
4,028,893 + CA264_17300 0.85 -0.6
4,029,008 + -0.2
4,029,008 + +0.0
4,029,009 - +0.5
4,029,066 + -0.5
4,029,066 + +0.5
4,029,067 - +1.2
4,029,171 + -0.7
4,029,197 - +0.2
4,029,197 - +0.4
4,029,197 - -0.5
4,029,197 - +0.5
4,029,250 + -0.3
4,029,306 + -0.2
4,029,397 + -1.2
4,029,397 + -0.6
4,029,397 + -0.5
4,029,397 + -0.6
4,029,398 - +0.4
4,029,398 - +0.2
4,029,575 - CA264_17305 0.37 -0.4
4,029,575 - CA264_17305 0.37 +0.2
4,029,779 - CA264_17305 0.82 +0.0
4,029,896 + -0.2
4,029,898 + -0.4
4,029,899 - -0.2
4,029,899 - -0.3
4,029,899 - -0.5
4,029,899 - -0.4
4,029,902 + -0.5
4,029,902 + +0.0
4,029,902 + -0.2
4,029,902 + -0.4
4,029,903 - +0.4
4,029,903 - +2.4
4,029,903 - +0.7
4,030,002 - -0.9
4,030,002 - -0.1
4,030,060 + +0.1
4,030,081 - -0.9
4,030,175 + CA264_17310 0.10 +1.0

Or see this region's nucleotide sequence