Experiment: m.b. copper (II) chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_16115 and CA264_16120 are separated by 14 nucleotides CA264_16120 and CA264_16125 overlap by 29 nucleotides CA264_16125 and CA264_16130 are separated by 280 nucleotides
CA264_16115: CA264_16115 - hypothetical protein, at 3,752,576 to 3,753,403
_16115
CA264_16120: CA264_16120 - sensor histidine kinase, at 3,753,418 to 3,754,467
_16120
CA264_16125: CA264_16125 - DNA-binding response regulator, at 3,754,439 to 3,755,182
_16125
CA264_16130: CA264_16130 - TetR family transcriptional regulator, at 3,755,463 to 3,756,095
_16130
Position (kb)
3753
3754
3755 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3752.419 kb on + strand at 3752.449 kb on + strand at 3752.450 kb on - strand at 3752.453 kb on + strand at 3752.454 kb on - strand at 3752.454 kb on - strand at 3752.454 kb on - strand at 3752.454 kb on - strand at 3752.461 kb on - strand at 3752.461 kb on - strand at 3752.466 kb on - strand at 3752.539 kb on - strand at 3752.539 kb on - strand at 3752.539 kb on - strand at 3752.549 kb on + strand at 3752.550 kb on - strand at 3752.551 kb on + strand at 3752.552 kb on - strand at 3752.559 kb on - strand at 3752.559 kb on - strand at 3752.562 kb on + strand at 3752.562 kb on + strand at 3752.563 kb on - strand at 3752.650 kb on - strand at 3752.661 kb on + strand, within CA264_16115 at 3752.688 kb on + strand, within CA264_16115 at 3752.688 kb on + strand, within CA264_16115 at 3752.770 kb on + strand, within CA264_16115 at 3753.071 kb on - strand, within CA264_16115 at 3753.073 kb on - strand, within CA264_16115 at 3753.244 kb on + strand, within CA264_16115 at 3753.244 kb on + strand, within CA264_16115 at 3753.245 kb on - strand, within CA264_16115 at 3753.288 kb on + strand, within CA264_16115 at 3753.348 kb on + strand at 3753.349 kb on - strand at 3753.445 kb on + strand at 3753.501 kb on - strand at 3753.593 kb on - strand, within CA264_16120 at 3753.596 kb on - strand, within CA264_16120 at 3753.596 kb on - strand, within CA264_16120 at 3753.712 kb on + strand, within CA264_16120 at 3753.757 kb on - strand, within CA264_16120 at 3753.806 kb on - strand, within CA264_16120 at 3753.808 kb on - strand, within CA264_16120 at 3754.226 kb on + strand, within CA264_16120 at 3754.227 kb on - strand, within CA264_16120 at 3754.230 kb on - strand, within CA264_16120 at 3754.230 kb on - strand, within CA264_16120 at 3754.230 kb on - strand, within CA264_16120 at 3754.234 kb on - strand, within CA264_16120 at 3754.236 kb on - strand, within CA264_16120 at 3754.236 kb on - strand, within CA264_16120 at 3754.364 kb on - strand at 3754.459 kb on - strand at 3754.742 kb on - strand, within CA264_16125 at 3754.792 kb on + strand, within CA264_16125 at 3754.793 kb on - strand, within CA264_16125 at 3754.793 kb on - strand, within CA264_16125 at 3754.795 kb on - strand, within CA264_16125 at 3754.897 kb on + strand, within CA264_16125 at 3754.919 kb on + strand, within CA264_16125 at 3754.940 kb on + strand, within CA264_16125 at 3754.941 kb on - strand, within CA264_16125 at 3754.954 kb on + strand, within CA264_16125 at 3754.995 kb on - strand, within CA264_16125 at 3754.998 kb on - strand, within CA264_16125 at 3755.045 kb on + strand, within CA264_16125 at 3755.046 kb on - strand, within CA264_16125 at 3755.046 kb on - strand, within CA264_16125 at 3755.046 kb on - strand, within CA264_16125 at 3755.077 kb on - strand, within CA264_16125 at 3755.152 kb on + strand at 3755.378 kb on + strand at 3755.456 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM remove 3,752,419 + +0.1 3,752,449 + +0.7 3,752,450 - +0.2 3,752,453 + +1.6 3,752,454 - +0.3 3,752,454 - +0.6 3,752,454 - +1.1 3,752,454 - +1.5 3,752,461 - +1.4 3,752,461 - +2.2 3,752,466 - +0.1 3,752,539 - +0.4 3,752,539 - +0.5 3,752,539 - +0.5 3,752,549 + +1.0 3,752,550 - +0.3 3,752,551 + -0.7 3,752,552 - +0.9 3,752,559 - +0.5 3,752,559 - +0.2 3,752,562 + +0.9 3,752,562 + +1.0 3,752,563 - +1.5 3,752,650 - -0.1 3,752,661 + CA264_16115 0.10 +0.8 3,752,688 + CA264_16115 0.14 +0.8 3,752,688 + CA264_16115 0.14 -1.0 3,752,770 + CA264_16115 0.23 +0.3 3,753,071 - CA264_16115 0.60 +3.5 3,753,073 - CA264_16115 0.60 +4.3 3,753,244 + CA264_16115 0.81 -1.3 3,753,244 + CA264_16115 0.81 -0.1 3,753,245 - CA264_16115 0.81 +3.2 3,753,288 + CA264_16115 0.86 -2.2 3,753,348 + -0.1 3,753,349 - +3.1 3,753,445 + -0.8 3,753,501 - -0.5 3,753,593 - CA264_16120 0.17 -0.1 3,753,596 - CA264_16120 0.17 -1.8 3,753,596 - CA264_16120 0.17 -1.5 3,753,712 + CA264_16120 0.28 -0.4 3,753,757 - CA264_16120 0.32 +0.1 3,753,806 - CA264_16120 0.37 -2.1 3,753,808 - CA264_16120 0.37 -1.5 3,754,226 + CA264_16120 0.77 -3.0 3,754,227 - CA264_16120 0.77 +0.3 3,754,230 - CA264_16120 0.77 -1.3 3,754,230 - CA264_16120 0.77 -1.5 3,754,230 - CA264_16120 0.77 +0.6 3,754,234 - CA264_16120 0.78 -1.7 3,754,236 - CA264_16120 0.78 -1.8 3,754,236 - CA264_16120 0.78 -0.4 3,754,364 - -1.7 3,754,459 - -0.1 3,754,742 - CA264_16125 0.41 -0.3 3,754,792 + CA264_16125 0.47 +0.7 3,754,793 - CA264_16125 0.48 -0.2 3,754,793 - CA264_16125 0.48 -0.2 3,754,795 - CA264_16125 0.48 +0.4 3,754,897 + CA264_16125 0.62 -0.1 3,754,919 + CA264_16125 0.65 +0.6 3,754,940 + CA264_16125 0.67 +1.3 3,754,941 - CA264_16125 0.67 -0.3 3,754,954 + CA264_16125 0.69 +0.1 3,754,995 - CA264_16125 0.75 +0.7 3,754,998 - CA264_16125 0.75 -1.2 3,755,045 + CA264_16125 0.81 +0.2 3,755,046 - CA264_16125 0.82 +0.1 3,755,046 - CA264_16125 0.82 -0.1 3,755,046 - CA264_16125 0.82 +0.1 3,755,077 - CA264_16125 0.86 +0.2 3,755,152 + +0.5 3,755,378 + +0.5 3,755,456 + -0.0
Or see this region's nucleotide sequence