Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16120

Experiment: m.b. copper (II) chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_16115 and CA264_16120 are separated by 14 nucleotidesCA264_16120 and CA264_16125 overlap by 29 nucleotidesCA264_16125 and CA264_16130 are separated by 280 nucleotides CA264_16115: CA264_16115 - hypothetical protein, at 3,752,576 to 3,753,403 _16115 CA264_16120: CA264_16120 - sensor histidine kinase, at 3,753,418 to 3,754,467 _16120 CA264_16125: CA264_16125 - DNA-binding response regulator, at 3,754,439 to 3,755,182 _16125 CA264_16130: CA264_16130 - TetR family transcriptional regulator, at 3,755,463 to 3,756,095 _16130 Position (kb) 3753 3754 3755Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3752.419 kb on + strandat 3752.449 kb on + strandat 3752.450 kb on - strandat 3752.453 kb on + strandat 3752.454 kb on - strandat 3752.454 kb on - strandat 3752.454 kb on - strandat 3752.454 kb on - strandat 3752.461 kb on - strandat 3752.461 kb on - strandat 3752.466 kb on - strandat 3752.539 kb on - strandat 3752.539 kb on - strandat 3752.539 kb on - strandat 3752.549 kb on + strandat 3752.550 kb on - strandat 3752.551 kb on + strandat 3752.552 kb on - strandat 3752.559 kb on - strandat 3752.559 kb on - strandat 3752.562 kb on + strandat 3752.562 kb on + strandat 3752.563 kb on - strandat 3752.650 kb on - strandat 3752.661 kb on + strand, within CA264_16115at 3752.688 kb on + strand, within CA264_16115at 3752.688 kb on + strand, within CA264_16115at 3752.770 kb on + strand, within CA264_16115at 3753.071 kb on - strand, within CA264_16115at 3753.073 kb on - strand, within CA264_16115at 3753.244 kb on + strand, within CA264_16115at 3753.244 kb on + strand, within CA264_16115at 3753.245 kb on - strand, within CA264_16115at 3753.288 kb on + strand, within CA264_16115at 3753.348 kb on + strandat 3753.349 kb on - strandat 3753.445 kb on + strandat 3753.501 kb on - strandat 3753.593 kb on - strand, within CA264_16120at 3753.596 kb on - strand, within CA264_16120at 3753.596 kb on - strand, within CA264_16120at 3753.712 kb on + strand, within CA264_16120at 3753.757 kb on - strand, within CA264_16120at 3753.806 kb on - strand, within CA264_16120at 3753.808 kb on - strand, within CA264_16120at 3754.226 kb on + strand, within CA264_16120at 3754.227 kb on - strand, within CA264_16120at 3754.230 kb on - strand, within CA264_16120at 3754.230 kb on - strand, within CA264_16120at 3754.230 kb on - strand, within CA264_16120at 3754.234 kb on - strand, within CA264_16120at 3754.236 kb on - strand, within CA264_16120at 3754.236 kb on - strand, within CA264_16120at 3754.364 kb on - strandat 3754.459 kb on - strandat 3754.742 kb on - strand, within CA264_16125at 3754.792 kb on + strand, within CA264_16125at 3754.793 kb on - strand, within CA264_16125at 3754.793 kb on - strand, within CA264_16125at 3754.795 kb on - strand, within CA264_16125at 3754.897 kb on + strand, within CA264_16125at 3754.919 kb on + strand, within CA264_16125at 3754.940 kb on + strand, within CA264_16125at 3754.941 kb on - strand, within CA264_16125at 3754.954 kb on + strand, within CA264_16125at 3754.995 kb on - strand, within CA264_16125at 3754.998 kb on - strand, within CA264_16125at 3755.045 kb on + strand, within CA264_16125at 3755.046 kb on - strand, within CA264_16125at 3755.046 kb on - strand, within CA264_16125at 3755.046 kb on - strand, within CA264_16125at 3755.077 kb on - strand, within CA264_16125at 3755.152 kb on + strandat 3755.378 kb on + strandat 3755.456 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM
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3,752,419 + +0.1
3,752,449 + +0.7
3,752,450 - +0.2
3,752,453 + +1.6
3,752,454 - +0.3
3,752,454 - +0.6
3,752,454 - +1.1
3,752,454 - +1.5
3,752,461 - +1.4
3,752,461 - +2.2
3,752,466 - +0.1
3,752,539 - +0.4
3,752,539 - +0.5
3,752,539 - +0.5
3,752,549 + +1.0
3,752,550 - +0.3
3,752,551 + -0.7
3,752,552 - +0.9
3,752,559 - +0.5
3,752,559 - +0.2
3,752,562 + +0.9
3,752,562 + +1.0
3,752,563 - +1.5
3,752,650 - -0.1
3,752,661 + CA264_16115 0.10 +0.8
3,752,688 + CA264_16115 0.14 +0.8
3,752,688 + CA264_16115 0.14 -1.0
3,752,770 + CA264_16115 0.23 +0.3
3,753,071 - CA264_16115 0.60 +3.5
3,753,073 - CA264_16115 0.60 +4.3
3,753,244 + CA264_16115 0.81 -1.3
3,753,244 + CA264_16115 0.81 -0.1
3,753,245 - CA264_16115 0.81 +3.2
3,753,288 + CA264_16115 0.86 -2.2
3,753,348 + -0.1
3,753,349 - +3.1
3,753,445 + -0.8
3,753,501 - -0.5
3,753,593 - CA264_16120 0.17 -0.1
3,753,596 - CA264_16120 0.17 -1.8
3,753,596 - CA264_16120 0.17 -1.5
3,753,712 + CA264_16120 0.28 -0.4
3,753,757 - CA264_16120 0.32 +0.1
3,753,806 - CA264_16120 0.37 -2.1
3,753,808 - CA264_16120 0.37 -1.5
3,754,226 + CA264_16120 0.77 -3.0
3,754,227 - CA264_16120 0.77 +0.3
3,754,230 - CA264_16120 0.77 -1.3
3,754,230 - CA264_16120 0.77 -1.5
3,754,230 - CA264_16120 0.77 +0.6
3,754,234 - CA264_16120 0.78 -1.7
3,754,236 - CA264_16120 0.78 -1.8
3,754,236 - CA264_16120 0.78 -0.4
3,754,364 - -1.7
3,754,459 - -0.1
3,754,742 - CA264_16125 0.41 -0.3
3,754,792 + CA264_16125 0.47 +0.7
3,754,793 - CA264_16125 0.48 -0.2
3,754,793 - CA264_16125 0.48 -0.2
3,754,795 - CA264_16125 0.48 +0.4
3,754,897 + CA264_16125 0.62 -0.1
3,754,919 + CA264_16125 0.65 +0.6
3,754,940 + CA264_16125 0.67 +1.3
3,754,941 - CA264_16125 0.67 -0.3
3,754,954 + CA264_16125 0.69 +0.1
3,754,995 - CA264_16125 0.75 +0.7
3,754,998 - CA264_16125 0.75 -1.2
3,755,045 + CA264_16125 0.81 +0.2
3,755,046 - CA264_16125 0.82 +0.1
3,755,046 - CA264_16125 0.82 -0.1
3,755,046 - CA264_16125 0.82 +0.1
3,755,077 - CA264_16125 0.86 +0.2
3,755,152 + +0.5
3,755,378 + +0.5
3,755,456 + -0.0

Or see this region's nucleotide sequence