Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14640

Experiment: m.b. copper (II) chloride 0.16 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_14635 and CA264_14640 are separated by 17 nucleotidesCA264_14640 and CA264_14645 are separated by 423 nucleotidesCA264_14645 and CA264_14650 are separated by 94 nucleotides CA264_14635: CA264_14635 - hypothetical protein, at 3,443,348 to 3,444,472 _14635 CA264_14640: CA264_14640 - peptidase M16, at 3,444,490 to 3,445,776 _14640 CA264_14645: CA264_14645 - 5S ribosomal RNA, at 3,446,200 to 3,446,311 _14645 CA264_14650: CA264_14650 - 23S ribosomal RNA, at 3,446,406 to 3,449,291 _14650 Position (kb) 3444 3445 3446Strain fitness (log2 ratio) -3 -2 -1 0 1at 3443.619 kb on - strand, within CA264_14635at 3443.650 kb on + strand, within CA264_14635at 3443.651 kb on - strand, within CA264_14635at 3443.663 kb on + strand, within CA264_14635at 3443.720 kb on + strand, within CA264_14635at 3443.721 kb on - strand, within CA264_14635at 3443.740 kb on - strand, within CA264_14635at 3443.792 kb on + strand, within CA264_14635at 3443.846 kb on - strand, within CA264_14635at 3443.861 kb on - strand, within CA264_14635at 3443.862 kb on + strand, within CA264_14635at 3443.863 kb on - strand, within CA264_14635at 3443.870 kb on - strand, within CA264_14635at 3443.870 kb on - strand, within CA264_14635at 3443.944 kb on - strand, within CA264_14635at 3443.952 kb on - strand, within CA264_14635at 3443.955 kb on - strand, within CA264_14635at 3443.955 kb on - strand, within CA264_14635at 3443.956 kb on + strand, within CA264_14635at 3444.108 kb on - strand, within CA264_14635at 3444.119 kb on - strand, within CA264_14635at 3444.273 kb on - strand, within CA264_14635at 3444.279 kb on - strand, within CA264_14635at 3444.314 kb on + strand, within CA264_14635at 3444.314 kb on + strand, within CA264_14635at 3444.360 kb on + strandat 3444.365 kb on - strandat 3444.365 kb on - strandat 3444.366 kb on + strandat 3444.366 kb on + strandat 3444.367 kb on - strandat 3444.367 kb on - strandat 3444.367 kb on - strandat 3444.399 kb on - strandat 3444.399 kb on - strandat 3444.399 kb on - strandat 3444.399 kb on - strandat 3444.473 kb on + strandat 3444.486 kb on - strandat 3444.527 kb on + strandat 3444.527 kb on + strandat 3444.527 kb on + strandat 3444.527 kb on + strandat 3444.527 kb on + strandat 3444.528 kb on - strandat 3444.567 kb on + strandat 3444.568 kb on - strandat 3444.615 kb on + strandat 3444.743 kb on + strand, within CA264_14640at 3444.806 kb on - strand, within CA264_14640at 3444.821 kb on - strand, within CA264_14640at 3444.821 kb on - strand, within CA264_14640at 3444.822 kb on + strand, within CA264_14640at 3444.822 kb on + strand, within CA264_14640at 3444.823 kb on - strand, within CA264_14640at 3444.845 kb on + strand, within CA264_14640at 3444.906 kb on + strand, within CA264_14640at 3444.946 kb on + strand, within CA264_14640at 3444.947 kb on - strand, within CA264_14640at 3444.977 kb on + strand, within CA264_14640at 3444.997 kb on + strand, within CA264_14640at 3444.997 kb on + strand, within CA264_14640at 3444.997 kb on + strand, within CA264_14640at 3444.998 kb on - strand, within CA264_14640at 3445.057 kb on + strand, within CA264_14640at 3445.112 kb on + strand, within CA264_14640at 3445.188 kb on + strand, within CA264_14640at 3445.189 kb on - strand, within CA264_14640at 3445.200 kb on + strand, within CA264_14640at 3445.203 kb on + strand, within CA264_14640at 3445.203 kb on + strand, within CA264_14640at 3445.204 kb on - strand, within CA264_14640at 3445.265 kb on + strand, within CA264_14640at 3445.266 kb on - strand, within CA264_14640at 3445.270 kb on - strand, within CA264_14640at 3445.271 kb on + strand, within CA264_14640at 3445.307 kb on - strand, within CA264_14640at 3445.345 kb on + strand, within CA264_14640at 3445.374 kb on - strand, within CA264_14640at 3445.390 kb on + strand, within CA264_14640at 3445.397 kb on - strand, within CA264_14640at 3445.440 kb on - strand, within CA264_14640at 3445.440 kb on - strand, within CA264_14640at 3445.487 kb on + strand, within CA264_14640at 3445.532 kb on + strand, within CA264_14640at 3445.565 kb on - strand, within CA264_14640at 3445.593 kb on + strand, within CA264_14640at 3445.594 kb on - strand, within CA264_14640at 3445.594 kb on - strand, within CA264_14640at 3445.621 kb on + strand, within CA264_14640at 3445.622 kb on - strand, within CA264_14640at 3445.622 kb on - strand, within CA264_14640at 3445.624 kb on - strand, within CA264_14640at 3445.661 kb on - strandat 3445.669 kb on + strandat 3445.669 kb on + strandat 3445.726 kb on + strandat 3445.726 kb on + strandat 3445.749 kb on + strandat 3445.774 kb on + strandat 3445.775 kb on - strandat 3445.810 kb on - strandat 3445.810 kb on - strandat 3445.860 kb on + strandat 3445.876 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM
remove
3,443,619 - CA264_14635 0.24 -0.1
3,443,650 + CA264_14635 0.27 -0.3
3,443,651 - CA264_14635 0.27 +0.5
3,443,663 + CA264_14635 0.28 +1.4
3,443,720 + CA264_14635 0.33 +0.2
3,443,721 - CA264_14635 0.33 -0.7
3,443,740 - CA264_14635 0.35 -0.4
3,443,792 + CA264_14635 0.39 +0.1
3,443,846 - CA264_14635 0.44 -0.4
3,443,861 - CA264_14635 0.46 -0.1
3,443,862 + CA264_14635 0.46 -3.1
3,443,863 - CA264_14635 0.46 -0.6
3,443,870 - CA264_14635 0.46 +0.1
3,443,870 - CA264_14635 0.46 -0.0
3,443,944 - CA264_14635 0.53 +0.2
3,443,952 - CA264_14635 0.54 +0.4
3,443,955 - CA264_14635 0.54 -0.6
3,443,955 - CA264_14635 0.54 +0.4
3,443,956 + CA264_14635 0.54 -0.3
3,444,108 - CA264_14635 0.68 -0.1
3,444,119 - CA264_14635 0.69 +0.3
3,444,273 - CA264_14635 0.82 +0.7
3,444,279 - CA264_14635 0.83 -0.2
3,444,314 + CA264_14635 0.86 -0.1
3,444,314 + CA264_14635 0.86 -0.1
3,444,360 + -0.5
3,444,365 - -0.4
3,444,365 - +0.1
3,444,366 + -0.9
3,444,366 + -0.8
3,444,367 - -1.3
3,444,367 - -1.4
3,444,367 - +0.4
3,444,399 - +0.6
3,444,399 - +0.2
3,444,399 - -0.1
3,444,399 - -0.0
3,444,473 + +0.3
3,444,486 - -0.0
3,444,527 + -0.0
3,444,527 + -0.7
3,444,527 + -1.3
3,444,527 + +1.7
3,444,527 + -0.5
3,444,528 - -0.0
3,444,567 + -0.3
3,444,568 - -0.2
3,444,615 + -0.4
3,444,743 + CA264_14640 0.20 -0.5
3,444,806 - CA264_14640 0.25 -1.5
3,444,821 - CA264_14640 0.26 -0.3
3,444,821 - CA264_14640 0.26 -0.1
3,444,822 + CA264_14640 0.26 +0.8
3,444,822 + CA264_14640 0.26 -0.5
3,444,823 - CA264_14640 0.26 -0.3
3,444,845 + CA264_14640 0.28 +1.0
3,444,906 + CA264_14640 0.32 -0.2
3,444,946 + CA264_14640 0.35 +1.0
3,444,947 - CA264_14640 0.36 +0.0
3,444,977 + CA264_14640 0.38 -0.9
3,444,997 + CA264_14640 0.39 -0.4
3,444,997 + CA264_14640 0.39 -0.4
3,444,997 + CA264_14640 0.39 -0.3
3,444,998 - CA264_14640 0.39 +0.1
3,445,057 + CA264_14640 0.44 -0.2
3,445,112 + CA264_14640 0.48 -1.2
3,445,188 + CA264_14640 0.54 +0.1
3,445,189 - CA264_14640 0.54 +1.5
3,445,200 + CA264_14640 0.55 -1.2
3,445,203 + CA264_14640 0.55 +0.2
3,445,203 + CA264_14640 0.55 -0.3
3,445,204 - CA264_14640 0.55 -1.0
3,445,265 + CA264_14640 0.60 -0.6
3,445,266 - CA264_14640 0.60 +0.8
3,445,270 - CA264_14640 0.61 -0.1
3,445,271 + CA264_14640 0.61 -0.0
3,445,307 - CA264_14640 0.63 -0.8
3,445,345 + CA264_14640 0.66 -1.2
3,445,374 - CA264_14640 0.69 +0.5
3,445,390 + CA264_14640 0.70 -1.2
3,445,397 - CA264_14640 0.70 -0.1
3,445,440 - CA264_14640 0.74 -0.8
3,445,440 - CA264_14640 0.74 -1.7
3,445,487 + CA264_14640 0.77 -0.5
3,445,532 + CA264_14640 0.81 -0.3
3,445,565 - CA264_14640 0.84 -1.0
3,445,593 + CA264_14640 0.86 -0.3
3,445,594 - CA264_14640 0.86 -0.2
3,445,594 - CA264_14640 0.86 -0.8
3,445,621 + CA264_14640 0.88 -0.1
3,445,622 - CA264_14640 0.88 -1.4
3,445,622 - CA264_14640 0.88 -0.4
3,445,624 - CA264_14640 0.88 +0.1
3,445,661 - +0.3
3,445,669 + +1.1
3,445,669 + -0.4
3,445,726 + -1.0
3,445,726 + -1.7
3,445,749 + -0.7
3,445,774 + -0.5
3,445,775 - +0.0
3,445,810 - -0.5
3,445,810 - -0.5
3,445,860 + -1.4
3,445,876 - +1.1

Or see this region's nucleotide sequence