Experiment: m.b. copper (II) chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_13990 and CA264_13995 are separated by 3 nucleotides CA264_13995 and CA264_14000 are separated by 35 nucleotides
CA264_13990: CA264_13990 - 1,4-beta-xylanase, at 3,274,787 to 3,275,965
_13990
CA264_13995: CA264_13995 - carbohydrate kinase, at 3,275,969 to 3,277,453
_13995
CA264_14000: CA264_14000 - xylose isomerase, at 3,277,489 to 3,278,820
_14000
Position (kb)
3275
3276
3277
3278 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3275.006 kb on - strand, within CA264_13990 at 3275.081 kb on + strand, within CA264_13990 at 3275.082 kb on - strand, within CA264_13990 at 3275.150 kb on - strand, within CA264_13990 at 3275.398 kb on + strand, within CA264_13990 at 3275.399 kb on - strand, within CA264_13990 at 3275.426 kb on + strand, within CA264_13990 at 3275.427 kb on - strand, within CA264_13990 at 3275.435 kb on + strand, within CA264_13990 at 3275.437 kb on + strand, within CA264_13990 at 3275.437 kb on + strand, within CA264_13990 at 3275.608 kb on - strand, within CA264_13990 at 3275.699 kb on + strand, within CA264_13990 at 3275.699 kb on + strand, within CA264_13990 at 3275.699 kb on + strand, within CA264_13990 at 3275.700 kb on - strand, within CA264_13990 at 3275.810 kb on - strand, within CA264_13990 at 3275.900 kb on + strand at 3275.901 kb on - strand at 3275.963 kb on + strand at 3275.963 kb on + strand at 3275.964 kb on - strand at 3275.966 kb on + strand at 3275.967 kb on - strand at 3275.976 kb on + strand at 3275.985 kb on + strand at 3275.985 kb on + strand at 3275.986 kb on - strand at 3275.986 kb on - strand at 3275.986 kb on - strand at 3275.986 kb on - strand at 3275.989 kb on + strand at 3275.989 kb on + strand at 3275.990 kb on - strand at 3275.992 kb on - strand at 3276.021 kb on + strand at 3276.083 kb on - strand at 3276.150 kb on + strand, within CA264_13995 at 3276.422 kb on + strand, within CA264_13995 at 3276.564 kb on - strand, within CA264_13995 at 3276.566 kb on + strand, within CA264_13995 at 3276.569 kb on - strand, within CA264_13995 at 3276.797 kb on + strand, within CA264_13995 at 3276.798 kb on - strand, within CA264_13995 at 3276.938 kb on + strand, within CA264_13995 at 3277.066 kb on - strand, within CA264_13995 at 3277.463 kb on + strand at 3277.478 kb on + strand at 3277.520 kb on - strand at 3277.542 kb on + strand at 3277.543 kb on - strand at 3277.788 kb on - strand, within CA264_14000 at 3277.798 kb on + strand, within CA264_14000 at 3277.798 kb on + strand, within CA264_14000 at 3277.801 kb on + strand, within CA264_14000 at 3277.802 kb on - strand, within CA264_14000 at 3277.883 kb on - strand, within CA264_14000 at 3277.958 kb on - strand, within CA264_14000 at 3278.063 kb on - strand, within CA264_14000 at 3278.063 kb on - strand, within CA264_14000 at 3278.089 kb on + strand, within CA264_14000 at 3278.090 kb on - strand, within CA264_14000 at 3278.164 kb on + strand, within CA264_14000 at 3278.165 kb on - strand, within CA264_14000 at 3278.279 kb on - strand, within CA264_14000
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM remove 3,275,006 - CA264_13990 0.19 +0.3 3,275,081 + CA264_13990 0.25 -1.9 3,275,082 - CA264_13990 0.25 -0.7 3,275,150 - CA264_13990 0.31 +0.8 3,275,398 + CA264_13990 0.52 -3.7 3,275,399 - CA264_13990 0.52 -0.6 3,275,426 + CA264_13990 0.54 -3.6 3,275,427 - CA264_13990 0.54 -0.2 3,275,435 + CA264_13990 0.55 -3.5 3,275,437 + CA264_13990 0.55 -2.4 3,275,437 + CA264_13990 0.55 -3.6 3,275,608 - CA264_13990 0.70 +0.7 3,275,699 + CA264_13990 0.77 -1.0 3,275,699 + CA264_13990 0.77 +0.5 3,275,699 + CA264_13990 0.77 -2.7 3,275,700 - CA264_13990 0.77 -0.1 3,275,810 - CA264_13990 0.87 -2.0 3,275,900 + -2.6 3,275,901 - -0.8 3,275,963 + -3.4 3,275,963 + -0.8 3,275,964 - -1.6 3,275,966 + -1.2 3,275,967 - +0.7 3,275,976 + -0.8 3,275,985 + -1.2 3,275,985 + +0.3 3,275,986 - -2.3 3,275,986 - -0.9 3,275,986 - +1.9 3,275,986 - -1.8 3,275,989 + -0.6 3,275,989 + -1.7 3,275,990 - +0.3 3,275,992 - -0.2 3,276,021 + -0.9 3,276,083 - -1.8 3,276,150 + CA264_13995 0.12 -3.1 3,276,422 + CA264_13995 0.31 -1.5 3,276,564 - CA264_13995 0.40 +0.8 3,276,566 + CA264_13995 0.40 -2.2 3,276,569 - CA264_13995 0.40 -0.9 3,276,797 + CA264_13995 0.56 -1.0 3,276,798 - CA264_13995 0.56 -2.0 3,276,938 + CA264_13995 0.65 -1.7 3,277,066 - CA264_13995 0.74 -3.4 3,277,463 + -2.1 3,277,478 + -1.9 3,277,520 - -1.2 3,277,542 + -0.9 3,277,543 - -0.7 3,277,788 - CA264_14000 0.22 -0.6 3,277,798 + CA264_14000 0.23 -1.1 3,277,798 + CA264_14000 0.23 -0.2 3,277,801 + CA264_14000 0.23 -1.2 3,277,802 - CA264_14000 0.23 +0.3 3,277,883 - CA264_14000 0.30 -0.8 3,277,958 - CA264_14000 0.35 +0.3 3,278,063 - CA264_14000 0.43 -0.2 3,278,063 - CA264_14000 0.43 -0.6 3,278,089 + CA264_14000 0.45 -1.7 3,278,090 - CA264_14000 0.45 -0.7 3,278,164 + CA264_14000 0.51 -0.8 3,278,165 - CA264_14000 0.51 +1.2 3,278,279 - CA264_14000 0.59 +1.2
Or see this region's nucleotide sequence