Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13130

Experiment: m.b. copper (II) chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13120 and CA264_13125 are separated by 100 nucleotidesCA264_13125 and CA264_13130 are separated by 44 nucleotidesCA264_13130 and CA264_13135 are separated by 159 nucleotidesCA264_13135 and CA264_13140 are separated by 125 nucleotides CA264_13120: CA264_13120 - hypothetical protein, at 3,060,685 to 3,060,924 _13120 CA264_13125: CA264_13125 - RNA polymerase subunit sigma-70, at 3,061,025 to 3,061,597 _13125 CA264_13130: CA264_13130 - peptidase S1, at 3,061,642 to 3,062,730 _13130 CA264_13135: CA264_13135 - hypothetical protein, at 3,062,890 to 3,063,603 _13135 CA264_13140: CA264_13140 - hypothetical protein, at 3,063,729 to 3,064,421 _13140 Position (kb) 3061 3062 3063Strain fitness (log2 ratio) -2 -1 0 1at 3060.654 kb on + strandat 3060.661 kb on + strandat 3060.677 kb on - strandat 3060.681 kb on - strandat 3060.851 kb on - strand, within CA264_13120at 3060.940 kb on - strandat 3061.062 kb on + strandat 3061.062 kb on + strandat 3061.062 kb on + strandat 3061.128 kb on + strand, within CA264_13125at 3061.139 kb on - strand, within CA264_13125at 3061.182 kb on - strand, within CA264_13125at 3061.216 kb on - strand, within CA264_13125at 3061.256 kb on + strand, within CA264_13125at 3061.262 kb on + strand, within CA264_13125at 3061.262 kb on + strand, within CA264_13125at 3061.340 kb on - strand, within CA264_13125at 3061.347 kb on + strand, within CA264_13125at 3061.458 kb on - strand, within CA264_13125at 3061.460 kb on + strand, within CA264_13125at 3061.460 kb on + strand, within CA264_13125at 3061.464 kb on + strand, within CA264_13125at 3061.464 kb on + strand, within CA264_13125at 3061.465 kb on - strand, within CA264_13125at 3061.506 kb on - strand, within CA264_13125at 3061.538 kb on + strand, within CA264_13125at 3061.593 kb on + strandat 3061.596 kb on - strandat 3061.596 kb on - strandat 3061.596 kb on - strandat 3061.605 kb on - strandat 3061.609 kb on + strandat 3061.651 kb on + strandat 3061.651 kb on + strandat 3061.660 kb on + strandat 3061.670 kb on + strandat 3061.678 kb on + strandat 3061.818 kb on - strand, within CA264_13130at 3061.985 kb on + strand, within CA264_13130at 3062.017 kb on + strand, within CA264_13130at 3062.018 kb on - strand, within CA264_13130at 3062.082 kb on + strand, within CA264_13130at 3062.163 kb on - strand, within CA264_13130at 3062.245 kb on + strand, within CA264_13130at 3062.320 kb on + strand, within CA264_13130at 3062.320 kb on + strand, within CA264_13130at 3062.321 kb on - strand, within CA264_13130at 3062.321 kb on - strand, within CA264_13130at 3062.597 kb on + strand, within CA264_13130at 3062.597 kb on + strand, within CA264_13130at 3062.598 kb on - strand, within CA264_13130at 3062.728 kb on + strandat 3062.728 kb on + strandat 3062.729 kb on - strandat 3062.733 kb on - strandat 3062.733 kb on - strandat 3062.742 kb on - strandat 3062.834 kb on - strandat 3062.838 kb on + strandat 3062.849 kb on - strandat 3062.852 kb on - strandat 3062.852 kb on - strandat 3062.871 kb on + strandat 3062.873 kb on + strandat 3062.874 kb on - strandat 3062.879 kb on - strandat 3062.889 kb on + strandat 3062.909 kb on + strandat 3062.909 kb on + strandat 3062.909 kb on + strandat 3062.915 kb on + strandat 3062.931 kb on + strandat 3062.931 kb on + strandat 3062.936 kb on + strandat 3062.936 kb on + strandat 3062.937 kb on - strandat 3062.937 kb on - strandat 3062.962 kb on - strand, within CA264_13135at 3062.962 kb on - strand, within CA264_13135at 3062.964 kb on + strand, within CA264_13135at 3062.964 kb on + strand, within CA264_13135at 3062.965 kb on - strand, within CA264_13135at 3062.965 kb on - strand, within CA264_13135at 3062.965 kb on - strand, within CA264_13135at 3063.043 kb on + strand, within CA264_13135at 3063.043 kb on + strand, within CA264_13135at 3063.043 kb on + strand, within CA264_13135at 3063.043 kb on + strand, within CA264_13135at 3063.044 kb on - strand, within CA264_13135at 3063.044 kb on - strand, within CA264_13135at 3063.049 kb on + strand, within CA264_13135at 3063.049 kb on + strand, within CA264_13135at 3063.049 kb on + strand, within CA264_13135at 3063.049 kb on + strand, within CA264_13135at 3063.049 kb on + strand, within CA264_13135at 3063.102 kb on + strand, within CA264_13135at 3063.102 kb on + strand, within CA264_13135at 3063.119 kb on - strand, within CA264_13135at 3063.158 kb on - strand, within CA264_13135at 3063.164 kb on + strand, within CA264_13135at 3063.164 kb on + strand, within CA264_13135at 3063.165 kb on - strand, within CA264_13135at 3063.165 kb on - strand, within CA264_13135at 3063.176 kb on + strand, within CA264_13135at 3063.177 kb on - strand, within CA264_13135at 3063.251 kb on + strand, within CA264_13135at 3063.256 kb on - strand, within CA264_13135at 3063.299 kb on + strand, within CA264_13135at 3063.300 kb on - strand, within CA264_13135at 3063.442 kb on + strand, within CA264_13135at 3063.442 kb on + strand, within CA264_13135at 3063.442 kb on + strand, within CA264_13135at 3063.443 kb on - strand, within CA264_13135at 3063.507 kb on + strand, within CA264_13135at 3063.543 kb on - strandat 3063.618 kb on - strandat 3063.618 kb on - strandat 3063.707 kb on + strandat 3063.707 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM
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3,060,654 + +1.0
3,060,661 + +0.6
3,060,677 - +0.2
3,060,681 - -1.8
3,060,851 - CA264_13120 0.69 +0.3
3,060,940 - +0.0
3,061,062 + -0.6
3,061,062 + -0.5
3,061,062 + -1.4
3,061,128 + CA264_13125 0.18 -0.2
3,061,139 - CA264_13125 0.20 -1.0
3,061,182 - CA264_13125 0.27 -1.1
3,061,216 - CA264_13125 0.33 -1.1
3,061,256 + CA264_13125 0.40 -0.9
3,061,262 + CA264_13125 0.41 +0.0
3,061,262 + CA264_13125 0.41 -0.1
3,061,340 - CA264_13125 0.55 -0.7
3,061,347 + CA264_13125 0.56 +0.0
3,061,458 - CA264_13125 0.76 -1.6
3,061,460 + CA264_13125 0.76 -1.8
3,061,460 + CA264_13125 0.76 +1.0
3,061,464 + CA264_13125 0.77 +0.9
3,061,464 + CA264_13125 0.77 -1.4
3,061,465 - CA264_13125 0.77 +0.8
3,061,506 - CA264_13125 0.84 -0.6
3,061,538 + CA264_13125 0.90 -1.0
3,061,593 + -0.1
3,061,596 - +0.4
3,061,596 - +1.3
3,061,596 - +1.6
3,061,605 - +0.6
3,061,609 + -0.5
3,061,651 + +0.1
3,061,651 + -1.7
3,061,660 + +0.2
3,061,670 + -0.3
3,061,678 + -0.4
3,061,818 - CA264_13130 0.16 -0.1
3,061,985 + CA264_13130 0.31 +0.2
3,062,017 + CA264_13130 0.34 +0.2
3,062,018 - CA264_13130 0.35 +0.0
3,062,082 + CA264_13130 0.40 +0.1
3,062,163 - CA264_13130 0.48 +1.0
3,062,245 + CA264_13130 0.55 +0.5
3,062,320 + CA264_13130 0.62 +0.8
3,062,320 + CA264_13130 0.62 -0.8
3,062,321 - CA264_13130 0.62 +1.3
3,062,321 - CA264_13130 0.62 +0.4
3,062,597 + CA264_13130 0.88 -0.4
3,062,597 + CA264_13130 0.88 +0.7
3,062,598 - CA264_13130 0.88 +0.6
3,062,728 + -0.5
3,062,728 + -0.2
3,062,729 - +0.4
3,062,733 - -0.1
3,062,733 - -0.4
3,062,742 - -0.0
3,062,834 - -0.2
3,062,838 + +0.9
3,062,849 - +1.6
3,062,852 - -0.6
3,062,852 - -0.6
3,062,871 + -0.2
3,062,873 + -0.6
3,062,874 - +1.2
3,062,879 - -0.3
3,062,889 + -0.3
3,062,909 + -0.9
3,062,909 + -1.0
3,062,909 + -1.0
3,062,915 + +0.0
3,062,931 + -0.1
3,062,931 + +0.7
3,062,936 + +0.4
3,062,936 + -0.7
3,062,937 - -0.2
3,062,937 - +0.2
3,062,962 - CA264_13135 0.10 -0.0
3,062,962 - CA264_13135 0.10 +0.6
3,062,964 + CA264_13135 0.10 +0.3
3,062,964 + CA264_13135 0.10 -0.7
3,062,965 - CA264_13135 0.11 +0.0
3,062,965 - CA264_13135 0.11 -0.6
3,062,965 - CA264_13135 0.11 +0.3
3,063,043 + CA264_13135 0.21 +0.1
3,063,043 + CA264_13135 0.21 -1.6
3,063,043 + CA264_13135 0.21 +0.3
3,063,043 + CA264_13135 0.21 +0.2
3,063,044 - CA264_13135 0.22 +0.1
3,063,044 - CA264_13135 0.22 +0.2
3,063,049 + CA264_13135 0.22 -0.8
3,063,049 + CA264_13135 0.22 -0.7
3,063,049 + CA264_13135 0.22 -1.4
3,063,049 + CA264_13135 0.22 -1.7
3,063,049 + CA264_13135 0.22 +1.6
3,063,102 + CA264_13135 0.30 -1.4
3,063,102 + CA264_13135 0.30 -1.4
3,063,119 - CA264_13135 0.32 +0.6
3,063,158 - CA264_13135 0.38 +0.8
3,063,164 + CA264_13135 0.38 -1.0
3,063,164 + CA264_13135 0.38 +0.4
3,063,165 - CA264_13135 0.39 -0.1
3,063,165 - CA264_13135 0.39 +0.6
3,063,176 + CA264_13135 0.40 -0.2
3,063,177 - CA264_13135 0.40 +0.3
3,063,251 + CA264_13135 0.51 -0.2
3,063,256 - CA264_13135 0.51 -1.0
3,063,299 + CA264_13135 0.57 -1.6
3,063,300 - CA264_13135 0.57 -0.1
3,063,442 + CA264_13135 0.77 -0.2
3,063,442 + CA264_13135 0.77 -0.2
3,063,442 + CA264_13135 0.77 -0.6
3,063,443 - CA264_13135 0.77 +0.6
3,063,507 + CA264_13135 0.86 -0.5
3,063,543 - +0.6
3,063,618 - +0.0
3,063,618 - -0.2
3,063,707 + +0.3
3,063,707 + +0.3

Or see this region's nucleotide sequence