Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12560

Experiment: m.b. copper (II) chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12555 and CA264_12560 are separated by 146 nucleotidesCA264_12560 and CA264_12565 are separated by 147 nucleotides CA264_12555: CA264_12555 - protein-L-isoaspartate O-methyltransferase, at 2,929,463 to 2,930,743 _12555 CA264_12560: CA264_12560 - hypothetical protein, at 2,930,890 to 2,931,621 _12560 CA264_12565: CA264_12565 - competence/damage-inducible protein A, at 2,931,769 to 2,933,028 _12565 Position (kb) 2930 2931 2932Strain fitness (log2 ratio) -1 0 1at 2930.062 kb on - strand, within CA264_12555at 2930.062 kb on - strand, within CA264_12555at 2930.134 kb on + strand, within CA264_12555at 2930.134 kb on + strand, within CA264_12555at 2930.214 kb on + strand, within CA264_12555at 2930.215 kb on - strand, within CA264_12555at 2930.215 kb on - strand, within CA264_12555at 2930.215 kb on - strand, within CA264_12555at 2930.215 kb on - strand, within CA264_12555at 2930.338 kb on - strand, within CA264_12555at 2930.391 kb on + strand, within CA264_12555at 2930.460 kb on + strand, within CA264_12555at 2930.560 kb on + strand, within CA264_12555at 2930.583 kb on - strand, within CA264_12555at 2930.711 kb on - strandat 2930.719 kb on + strandat 2930.743 kb on + strandat 2930.791 kb on - strandat 2930.814 kb on - strandat 2930.841 kb on + strandat 2930.846 kb on - strandat 2930.870 kb on - strandat 2930.880 kb on - strandat 2930.881 kb on + strandat 2930.882 kb on - strandat 2931.041 kb on - strand, within CA264_12560at 2931.090 kb on - strand, within CA264_12560at 2931.130 kb on - strand, within CA264_12560at 2931.180 kb on - strand, within CA264_12560at 2931.230 kb on - strand, within CA264_12560at 2931.306 kb on + strand, within CA264_12560at 2931.306 kb on + strand, within CA264_12560at 2931.307 kb on - strand, within CA264_12560at 2931.310 kb on + strand, within CA264_12560at 2931.310 kb on + strand, within CA264_12560at 2931.310 kb on + strand, within CA264_12560at 2931.310 kb on + strand, within CA264_12560at 2931.311 kb on - strand, within CA264_12560at 2931.340 kb on + strand, within CA264_12560at 2931.457 kb on + strand, within CA264_12560at 2931.457 kb on + strand, within CA264_12560at 2931.592 kb on + strandat 2931.593 kb on - strandat 2931.593 kb on - strandat 2931.593 kb on - strandat 2931.595 kb on - strandat 2931.595 kb on - strandat 2931.595 kb on - strandat 2931.606 kb on - strandat 2931.678 kb on - strandat 2931.678 kb on - strandat 2931.692 kb on + strandat 2931.693 kb on - strandat 2931.697 kb on - strandat 2931.706 kb on + strandat 2931.744 kb on - strandat 2931.750 kb on - strandat 2931.750 kb on - strandat 2931.768 kb on + strandat 2931.768 kb on + strandat 2931.769 kb on - strandat 2931.781 kb on - strandat 2931.800 kb on + strandat 2931.801 kb on - strandat 2931.964 kb on - strand, within CA264_12565at 2932.035 kb on + strand, within CA264_12565at 2932.036 kb on - strand, within CA264_12565at 2932.036 kb on - strand, within CA264_12565at 2932.320 kb on - strand, within CA264_12565at 2932.320 kb on - strand, within CA264_12565at 2932.408 kb on + strand, within CA264_12565at 2932.408 kb on + strand, within CA264_12565at 2932.409 kb on - strand, within CA264_12565at 2932.409 kb on - strand, within CA264_12565

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM
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2,930,062 - CA264_12555 0.47 -0.4
2,930,062 - CA264_12555 0.47 -0.7
2,930,134 + CA264_12555 0.52 +0.8
2,930,134 + CA264_12555 0.52 +0.1
2,930,214 + CA264_12555 0.59 +0.5
2,930,215 - CA264_12555 0.59 -0.2
2,930,215 - CA264_12555 0.59 +0.8
2,930,215 - CA264_12555 0.59 -0.2
2,930,215 - CA264_12555 0.59 -0.2
2,930,338 - CA264_12555 0.68 -0.6
2,930,391 + CA264_12555 0.72 +0.3
2,930,460 + CA264_12555 0.78 +0.8
2,930,560 + CA264_12555 0.86 -0.7
2,930,583 - CA264_12555 0.87 +0.4
2,930,711 - +0.2
2,930,719 + -0.1
2,930,743 + -0.4
2,930,791 - -0.2
2,930,814 - +0.4
2,930,841 + -0.5
2,930,846 - -0.0
2,930,870 - -0.3
2,930,880 - -0.7
2,930,881 + -0.1
2,930,882 - -0.0
2,931,041 - CA264_12560 0.21 -1.1
2,931,090 - CA264_12560 0.27 +0.2
2,931,130 - CA264_12560 0.33 +0.3
2,931,180 - CA264_12560 0.40 -0.9
2,931,230 - CA264_12560 0.46 -0.6
2,931,306 + CA264_12560 0.57 +1.4
2,931,306 + CA264_12560 0.57 -0.9
2,931,307 - CA264_12560 0.57 -0.5
2,931,310 + CA264_12560 0.57 +0.6
2,931,310 + CA264_12560 0.57 +0.5
2,931,310 + CA264_12560 0.57 +0.8
2,931,310 + CA264_12560 0.57 +0.9
2,931,311 - CA264_12560 0.58 +0.1
2,931,340 + CA264_12560 0.61 +0.2
2,931,457 + CA264_12560 0.77 +1.2
2,931,457 + CA264_12560 0.77 -1.5
2,931,592 + +0.5
2,931,593 - +0.6
2,931,593 - -0.4
2,931,593 - +0.2
2,931,595 - -0.4
2,931,595 - -0.2
2,931,595 - -0.5
2,931,606 - -0.1
2,931,678 - +0.2
2,931,678 - -0.7
2,931,692 + -0.5
2,931,693 - -0.3
2,931,697 - -0.5
2,931,706 + +0.2
2,931,744 - +0.2
2,931,750 - -0.5
2,931,750 - -0.9
2,931,768 + -0.0
2,931,768 + -0.1
2,931,769 - +0.1
2,931,781 - -0.2
2,931,800 + -0.5
2,931,801 - +1.2
2,931,964 - CA264_12565 0.15 +0.1
2,932,035 + CA264_12565 0.21 -1.4
2,932,036 - CA264_12565 0.21 -1.0
2,932,036 - CA264_12565 0.21 +0.7
2,932,320 - CA264_12565 0.44 +1.3
2,932,320 - CA264_12565 0.44 -0.0
2,932,408 + CA264_12565 0.51 -0.4
2,932,408 + CA264_12565 0.51 +0.1
2,932,409 - CA264_12565 0.51 -0.0
2,932,409 - CA264_12565 0.51 -0.5

Or see this region's nucleotide sequence