Experiment: m.b. copper (II) chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_12530 and CA264_12535 are separated by 21 nucleotides CA264_12535 and CA264_12540 are separated by 103 nucleotides
CA264_12530: CA264_12530 - RagB/SusD family nutrient uptake outer membrane protein, at 2,919,701 to 2,921,197
_12530
CA264_12535: CA264_12535 - hypothetical protein, at 2,921,219 to 2,922,622
_12535
CA264_12540: CA264_12540 - glycoside hydrolase, at 2,922,726 to 2,923,592
_12540
Position (kb)
2921
2922
2923 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2920.232 kb on + strand, within CA264_12530 at 2920.233 kb on - strand, within CA264_12530 at 2920.368 kb on + strand, within CA264_12530 at 2920.375 kb on + strand, within CA264_12530 at 2920.375 kb on + strand, within CA264_12530 at 2920.384 kb on + strand, within CA264_12530 at 2920.384 kb on + strand, within CA264_12530 at 2920.385 kb on - strand, within CA264_12530 at 2920.385 kb on - strand, within CA264_12530 at 2920.458 kb on - strand, within CA264_12530 at 2920.475 kb on + strand, within CA264_12530 at 2920.476 kb on - strand, within CA264_12530 at 2920.633 kb on + strand, within CA264_12530 at 2920.712 kb on + strand, within CA264_12530 at 2920.758 kb on - strand, within CA264_12530 at 2920.784 kb on + strand, within CA264_12530 at 2920.785 kb on - strand, within CA264_12530 at 2920.866 kb on + strand, within CA264_12530 at 2920.890 kb on - strand, within CA264_12530 at 2921.161 kb on + strand at 2921.161 kb on + strand at 2921.196 kb on - strand at 2921.229 kb on + strand at 2921.229 kb on + strand at 2921.296 kb on + strand at 2921.297 kb on - strand at 2921.297 kb on - strand at 2921.322 kb on + strand at 2921.473 kb on - strand, within CA264_12535 at 2921.484 kb on - strand, within CA264_12535 at 2921.502 kb on - strand, within CA264_12535 at 2921.502 kb on - strand, within CA264_12535 at 2921.503 kb on + strand, within CA264_12535 at 2921.504 kb on - strand, within CA264_12535 at 2921.515 kb on + strand, within CA264_12535 at 2921.557 kb on + strand, within CA264_12535 at 2921.604 kb on - strand, within CA264_12535 at 2921.743 kb on + strand, within CA264_12535 at 2921.744 kb on - strand, within CA264_12535 at 2921.755 kb on + strand, within CA264_12535 at 2921.755 kb on + strand, within CA264_12535 at 2921.755 kb on + strand, within CA264_12535 at 2921.756 kb on - strand, within CA264_12535 at 2921.759 kb on + strand, within CA264_12535 at 2921.759 kb on + strand, within CA264_12535 at 2921.760 kb on - strand, within CA264_12535 at 2921.960 kb on + strand, within CA264_12535 at 2921.961 kb on - strand, within CA264_12535 at 2921.961 kb on - strand, within CA264_12535 at 2921.970 kb on + strand, within CA264_12535 at 2922.083 kb on + strand, within CA264_12535 at 2922.101 kb on + strand, within CA264_12535 at 2922.318 kb on + strand, within CA264_12535 at 2922.319 kb on - strand, within CA264_12535 at 2922.333 kb on - strand, within CA264_12535 at 2922.409 kb on - strand, within CA264_12535 at 2922.409 kb on - strand, within CA264_12535 at 2922.409 kb on - strand, within CA264_12535 at 2922.454 kb on - strand, within CA264_12535 at 2922.454 kb on - strand, within CA264_12535 at 2922.552 kb on + strand at 2922.558 kb on + strand at 2922.559 kb on - strand at 2922.575 kb on + strand at 2922.575 kb on + strand at 2922.576 kb on - strand at 2922.576 kb on - strand at 2922.615 kb on + strand at 2922.615 kb on + strand at 2922.615 kb on + strand at 2922.621 kb on - strand at 2922.666 kb on + strand at 2922.666 kb on + strand at 2922.680 kb on + strand at 2922.680 kb on + strand at 2922.719 kb on + strand at 2922.719 kb on + strand at 2922.719 kb on + strand at 2922.720 kb on - strand at 2922.720 kb on - strand at 2922.720 kb on - strand at 2922.723 kb on + strand at 2922.723 kb on + strand at 2922.724 kb on - strand at 2922.724 kb on - strand at 2922.724 kb on - strand at 2922.724 kb on - strand at 2922.724 kb on - strand at 2922.726 kb on - strand at 2922.726 kb on - strand at 2922.731 kb on + strand at 2922.737 kb on - strand at 2922.737 kb on - strand at 2922.738 kb on + strand at 2922.738 kb on + strand at 2922.738 kb on + strand at 2922.739 kb on - strand at 2922.783 kb on - strand at 2922.837 kb on - strand, within CA264_12540 at 2922.975 kb on + strand, within CA264_12540 at 2922.975 kb on + strand, within CA264_12540 at 2923.006 kb on + strand, within CA264_12540 at 2923.007 kb on - strand, within CA264_12540 at 2923.064 kb on + strand, within CA264_12540 at 2923.219 kb on + strand, within CA264_12540 at 2923.219 kb on + strand, within CA264_12540 at 2923.284 kb on + strand, within CA264_12540 at 2923.285 kb on - strand, within CA264_12540 at 2923.285 kb on - strand, within CA264_12540 at 2923.325 kb on + strand, within CA264_12540 at 2923.325 kb on + strand, within CA264_12540 at 2923.328 kb on - strand, within CA264_12540 at 2923.331 kb on + strand, within CA264_12540 at 2923.331 kb on + strand, within CA264_12540 at 2923.338 kb on - strand, within CA264_12540 at 2923.397 kb on - strand, within CA264_12540 at 2923.420 kb on - strand, within CA264_12540 at 2923.555 kb on + strand at 2923.555 kb on + strand at 2923.560 kb on + strand at 2923.560 kb on + strand at 2923.560 kb on + strand at 2923.560 kb on + strand at 2923.561 kb on - strand at 2923.573 kb on - strand at 2923.590 kb on + strand at 2923.612 kb on + strand at 2923.612 kb on + strand at 2923.613 kb on - strand at 2923.613 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM remove 2,920,232 + CA264_12530 0.35 +0.6 2,920,233 - CA264_12530 0.36 -0.2 2,920,368 + CA264_12530 0.45 +1.4 2,920,375 + CA264_12530 0.45 -1.9 2,920,375 + CA264_12530 0.45 +0.3 2,920,384 + CA264_12530 0.46 -0.1 2,920,384 + CA264_12530 0.46 -0.9 2,920,385 - CA264_12530 0.46 -0.2 2,920,385 - CA264_12530 0.46 -0.3 2,920,458 - CA264_12530 0.51 +0.1 2,920,475 + CA264_12530 0.52 -0.5 2,920,476 - CA264_12530 0.52 -0.0 2,920,633 + CA264_12530 0.62 -1.5 2,920,712 + CA264_12530 0.68 -2.0 2,920,758 - CA264_12530 0.71 +1.3 2,920,784 + CA264_12530 0.72 -2.2 2,920,785 - CA264_12530 0.72 -1.1 2,920,866 + CA264_12530 0.78 -1.3 2,920,890 - CA264_12530 0.79 +0.0 2,921,161 + -1.8 2,921,161 + -1.3 2,921,196 - -0.3 2,921,229 + +0.7 2,921,229 + +0.3 2,921,296 + +1.3 2,921,297 - -0.7 2,921,297 - +1.3 2,921,322 + -0.4 2,921,473 - CA264_12535 0.18 +0.6 2,921,484 - CA264_12535 0.19 +0.5 2,921,502 - CA264_12535 0.20 -0.0 2,921,502 - CA264_12535 0.20 -0.3 2,921,503 + CA264_12535 0.20 -0.2 2,921,504 - CA264_12535 0.20 +0.7 2,921,515 + CA264_12535 0.21 +0.4 2,921,557 + CA264_12535 0.24 -0.2 2,921,604 - CA264_12535 0.27 -0.9 2,921,743 + CA264_12535 0.37 -0.4 2,921,744 - CA264_12535 0.37 +0.0 2,921,755 + CA264_12535 0.38 -0.6 2,921,755 + CA264_12535 0.38 -0.5 2,921,755 + CA264_12535 0.38 +0.6 2,921,756 - CA264_12535 0.38 +0.2 2,921,759 + CA264_12535 0.38 -0.9 2,921,759 + CA264_12535 0.38 +0.5 2,921,760 - CA264_12535 0.39 -1.4 2,921,960 + CA264_12535 0.53 -0.3 2,921,961 - CA264_12535 0.53 -0.5 2,921,961 - CA264_12535 0.53 -0.5 2,921,970 + CA264_12535 0.53 -0.7 2,922,083 + CA264_12535 0.62 +0.2 2,922,101 + CA264_12535 0.63 -2.9 2,922,318 + CA264_12535 0.78 +1.6 2,922,319 - CA264_12535 0.78 +0.2 2,922,333 - CA264_12535 0.79 -0.4 2,922,409 - CA264_12535 0.85 +1.0 2,922,409 - CA264_12535 0.85 +0.4 2,922,409 - CA264_12535 0.85 -0.8 2,922,454 - CA264_12535 0.88 -0.9 2,922,454 - CA264_12535 0.88 +0.9 2,922,552 + -0.1 2,922,558 + -0.1 2,922,559 - +0.3 2,922,575 + -0.4 2,922,575 + -0.3 2,922,576 - -0.5 2,922,576 - +1.0 2,922,615 + -0.3 2,922,615 + -0.3 2,922,615 + -1.1 2,922,621 - +1.4 2,922,666 + +0.6 2,922,666 + -0.4 2,922,680 + -0.4 2,922,680 + -0.5 2,922,719 + +1.6 2,922,719 + +1.6 2,922,719 + +1.8 2,922,720 - +0.1 2,922,720 - +1.6 2,922,720 - +0.9 2,922,723 + -0.4 2,922,723 + +0.6 2,922,724 - +0.7 2,922,724 - -0.4 2,922,724 - +0.6 2,922,724 - -0.0 2,922,724 - +0.4 2,922,726 - +0.3 2,922,726 - +0.2 2,922,731 + -0.3 2,922,737 - +0.1 2,922,737 - +1.6 2,922,738 + +0.1 2,922,738 + -0.5 2,922,738 + -0.8 2,922,739 - -0.3 2,922,783 - -0.5 2,922,837 - CA264_12540 0.13 -0.3 2,922,975 + CA264_12540 0.29 +0.1 2,922,975 + CA264_12540 0.29 -0.7 2,923,006 + CA264_12540 0.32 -0.8 2,923,007 - CA264_12540 0.32 -0.5 2,923,064 + CA264_12540 0.39 +0.2 2,923,219 + CA264_12540 0.57 +1.9 2,923,219 + CA264_12540 0.57 -0.9 2,923,284 + CA264_12540 0.64 +0.3 2,923,285 - CA264_12540 0.64 -1.1 2,923,285 - CA264_12540 0.64 -0.9 2,923,325 + CA264_12540 0.69 -0.1 2,923,325 + CA264_12540 0.69 -0.6 2,923,328 - CA264_12540 0.69 +0.3 2,923,331 + CA264_12540 0.70 +1.0 2,923,331 + CA264_12540 0.70 +0.3 2,923,338 - CA264_12540 0.71 +1.1 2,923,397 - CA264_12540 0.77 -0.2 2,923,420 - CA264_12540 0.80 +0.1 2,923,555 + -0.3 2,923,555 + +0.9 2,923,560 + -0.4 2,923,560 + +0.2 2,923,560 + -0.3 2,923,560 + -0.5 2,923,561 - +0.8 2,923,573 - -0.0 2,923,590 + -0.3 2,923,612 + +0.9 2,923,612 + +0.8 2,923,613 - +0.5 2,923,613 - +0.6
Or see this region's nucleotide sequence