Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12495

Experiment: m.b. copper (II) chloride 0.16 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_12490 and CA264_12495 are separated by 149 nucleotidesCA264_12495 and CA264_12500 are separated by 178 nucleotides CA264_12490: CA264_12490 - phosphohydrolase, at 2,908,530 to 2,909,762 _12490 CA264_12495: CA264_12495 - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 2,909,912 to 2,910,934 _12495 CA264_12500: CA264_12500 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase, at 2,911,113 to 2,912,507 _12500 Position (kb) 2909 2910 2911Strain fitness (log2 ratio) -1 0 1 2 3 4at 2908.958 kb on + strand, within CA264_12490at 2908.959 kb on - strand, within CA264_12490at 2908.959 kb on - strand, within CA264_12490at 2909.044 kb on - strand, within CA264_12490at 2909.044 kb on - strand, within CA264_12490at 2909.055 kb on + strand, within CA264_12490at 2909.068 kb on + strand, within CA264_12490at 2909.084 kb on + strand, within CA264_12490at 2909.087 kb on + strand, within CA264_12490at 2909.088 kb on - strand, within CA264_12490at 2909.111 kb on + strand, within CA264_12490at 2909.140 kb on - strand, within CA264_12490at 2909.178 kb on + strand, within CA264_12490at 2909.189 kb on - strand, within CA264_12490at 2909.190 kb on + strand, within CA264_12490at 2909.190 kb on + strand, within CA264_12490at 2909.190 kb on + strand, within CA264_12490at 2909.321 kb on + strand, within CA264_12490at 2909.321 kb on + strand, within CA264_12490at 2909.354 kb on - strand, within CA264_12490at 2909.454 kb on - strand, within CA264_12490at 2909.474 kb on + strand, within CA264_12490at 2909.482 kb on - strand, within CA264_12490at 2909.547 kb on + strand, within CA264_12490at 2909.548 kb on - strand, within CA264_12490at 2909.548 kb on - strand, within CA264_12490at 2909.634 kb on - strand, within CA264_12490at 2909.709 kb on + strandat 2909.710 kb on - strandat 2909.710 kb on - strandat 2909.710 kb on - strandat 2909.711 kb on + strandat 2909.712 kb on - strandat 2909.712 kb on - strandat 2909.712 kb on - strandat 2909.817 kb on - strandat 2909.906 kb on + strandat 2910.946 kb on - strandat 2910.946 kb on - strandat 2910.968 kb on + strandat 2910.988 kb on - strandat 2910.992 kb on + strandat 2910.992 kb on + strandat 2911.031 kb on + strandat 2911.031 kb on + strandat 2911.034 kb on - strandat 2911.034 kb on - strandat 2911.034 kb on - strandat 2911.037 kb on + strandat 2911.037 kb on + strandat 2911.059 kb on + strandat 2911.079 kb on + strandat 2911.102 kb on + strandat 2911.103 kb on - strandat 2911.103 kb on - strandat 2911.103 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM
remove
2,908,958 + CA264_12490 0.35 +2.4
2,908,959 - CA264_12490 0.35 +2.0
2,908,959 - CA264_12490 0.35 +1.8
2,909,044 - CA264_12490 0.42 +2.6
2,909,044 - CA264_12490 0.42 +1.7
2,909,055 + CA264_12490 0.43 +3.1
2,909,068 + CA264_12490 0.44 +1.4
2,909,084 + CA264_12490 0.45 +3.8
2,909,087 + CA264_12490 0.45 +1.6
2,909,088 - CA264_12490 0.45 -0.4
2,909,111 + CA264_12490 0.47 +2.7
2,909,140 - CA264_12490 0.49 +2.6
2,909,178 + CA264_12490 0.53 +2.7
2,909,189 - CA264_12490 0.53 +1.6
2,909,190 + CA264_12490 0.54 +2.1
2,909,190 + CA264_12490 0.54 +0.9
2,909,190 + CA264_12490 0.54 +3.0
2,909,321 + CA264_12490 0.64 +2.1
2,909,321 + CA264_12490 0.64 +3.4
2,909,354 - CA264_12490 0.67 +2.4
2,909,454 - CA264_12490 0.75 +2.2
2,909,474 + CA264_12490 0.77 +2.7
2,909,482 - CA264_12490 0.77 +2.2
2,909,547 + CA264_12490 0.82 +2.2
2,909,548 - CA264_12490 0.83 +2.3
2,909,548 - CA264_12490 0.83 +2.2
2,909,634 - CA264_12490 0.90 +1.2
2,909,709 + +1.7
2,909,710 - +2.8
2,909,710 - +3.2
2,909,710 - +2.5
2,909,711 + +1.8
2,909,712 - +3.0
2,909,712 - +2.7
2,909,712 - +2.8
2,909,817 - +2.4
2,909,906 + +0.6
2,910,946 - +0.2
2,910,946 - +0.6
2,910,968 + -0.5
2,910,988 - +1.1
2,910,992 + -0.4
2,910,992 + -1.2
2,911,031 + -1.0
2,911,031 + -0.4
2,911,034 - +0.3
2,911,034 - +1.0
2,911,034 - +0.7
2,911,037 + +0.2
2,911,037 + +0.4
2,911,059 + +0.8
2,911,079 + +1.2
2,911,102 + -1.0
2,911,103 - +0.6
2,911,103 - +1.0
2,911,103 - +0.7

Or see this region's nucleotide sequence