Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12020

Experiment: m.b. copper (II) chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12015 and CA264_12020 are separated by 5 nucleotidesCA264_12020 and CA264_12025 are separated by 12 nucleotides CA264_12015: CA264_12015 - hypothetical protein, at 2,789,278 to 2,796,495 _12015 CA264_12020: CA264_12020 - hypothetical protein, at 2,796,501 to 2,797,496 _12020 CA264_12025: CA264_12025 - hypothetical protein, at 2,797,509 to 2,798,690 _12025 Position (kb) 2796 2797 2798Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2795.685 kb on + strand, within CA264_12015at 2795.732 kb on + strand, within CA264_12015at 2795.733 kb on - strand, within CA264_12015at 2795.733 kb on - strand, within CA264_12015at 2795.733 kb on - strand, within CA264_12015at 2795.737 kb on + strand, within CA264_12015at 2795.738 kb on - strand, within CA264_12015at 2795.738 kb on - strand, within CA264_12015at 2795.738 kb on - strand, within CA264_12015at 2795.739 kb on + strand, within CA264_12015at 2795.742 kb on + strand, within CA264_12015at 2795.743 kb on - strand, within CA264_12015at 2795.743 kb on - strand, within CA264_12015at 2795.743 kb on - strand, within CA264_12015at 2795.769 kb on - strand, within CA264_12015at 2795.788 kb on + strandat 2795.812 kb on + strandat 2795.812 kb on + strandat 2795.813 kb on - strandat 2795.813 kb on - strandat 2795.813 kb on - strandat 2795.898 kb on + strandat 2795.898 kb on + strandat 2796.031 kb on + strandat 2796.032 kb on - strandat 2796.137 kb on - strandat 2796.166 kb on + strandat 2796.167 kb on - strandat 2796.188 kb on + strandat 2796.211 kb on + strandat 2796.212 kb on - strandat 2796.219 kb on - strandat 2796.432 kb on + strandat 2796.433 kb on - strandat 2796.433 kb on - strandat 2796.450 kb on + strandat 2796.453 kb on + strandat 2796.453 kb on + strandat 2796.454 kb on - strandat 2796.454 kb on - strandat 2796.493 kb on + strandat 2796.494 kb on - strandat 2796.517 kb on + strandat 2796.517 kb on + strandat 2796.601 kb on - strand, within CA264_12020at 2796.624 kb on + strand, within CA264_12020at 2796.624 kb on + strand, within CA264_12020at 2796.649 kb on - strand, within CA264_12020at 2796.651 kb on + strand, within CA264_12020at 2796.778 kb on - strand, within CA264_12020at 2796.930 kb on + strand, within CA264_12020at 2796.931 kb on - strand, within CA264_12020at 2797.068 kb on + strand, within CA264_12020at 2797.147 kb on - strand, within CA264_12020at 2797.239 kb on + strand, within CA264_12020at 2797.371 kb on + strand, within CA264_12020at 2797.371 kb on + strand, within CA264_12020at 2797.372 kb on - strand, within CA264_12020at 2797.372 kb on - strand, within CA264_12020at 2797.372 kb on - strand, within CA264_12020at 2797.377 kb on + strand, within CA264_12020at 2797.378 kb on - strand, within CA264_12020at 2797.440 kb on + strandat 2797.466 kb on + strandat 2797.484 kb on - strandat 2797.502 kb on + strandat 2797.503 kb on - strandat 2797.503 kb on - strandat 2797.531 kb on + strandat 2797.636 kb on - strand, within CA264_12025at 2797.663 kb on - strand, within CA264_12025at 2797.777 kb on - strand, within CA264_12025at 2797.815 kb on + strand, within CA264_12025at 2797.875 kb on - strand, within CA264_12025at 2798.030 kb on - strand, within CA264_12025at 2798.059 kb on - strand, within CA264_12025at 2798.059 kb on - strand, within CA264_12025at 2798.059 kb on - strand, within CA264_12025at 2798.115 kb on + strand, within CA264_12025at 2798.259 kb on + strand, within CA264_12025at 2798.259 kb on + strand, within CA264_12025at 2798.260 kb on - strand, within CA264_12025at 2798.260 kb on - strand, within CA264_12025at 2798.260 kb on - strand, within CA264_12025at 2798.264 kb on - strand, within CA264_12025at 2798.264 kb on - strand, within CA264_12025at 2798.264 kb on - strand, within CA264_12025at 2798.269 kb on - strand, within CA264_12025at 2798.269 kb on - strand, within CA264_12025at 2798.409 kb on - strand, within CA264_12025at 2798.430 kb on + strandat 2798.431 kb on - strand, within CA264_12025at 2798.431 kb on - strand, within CA264_12025at 2798.431 kb on - strand, within CA264_12025at 2798.431 kb on - strand, within CA264_12025at 2798.432 kb on + strand, within CA264_12025at 2798.432 kb on + strand, within CA264_12025at 2798.433 kb on - strand, within CA264_12025

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM
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2,795,685 + CA264_12015 0.89 +0.4
2,795,732 + CA264_12015 0.89 -0.5
2,795,733 - CA264_12015 0.89 -0.0
2,795,733 - CA264_12015 0.89 -1.7
2,795,733 - CA264_12015 0.89 -0.6
2,795,737 + CA264_12015 0.89 +0.0
2,795,738 - CA264_12015 0.89 -0.1
2,795,738 - CA264_12015 0.89 -0.3
2,795,738 - CA264_12015 0.89 -0.4
2,795,739 + CA264_12015 0.90 +0.7
2,795,742 + CA264_12015 0.90 +1.5
2,795,743 - CA264_12015 0.90 -1.1
2,795,743 - CA264_12015 0.90 -0.1
2,795,743 - CA264_12015 0.90 +0.5
2,795,769 - CA264_12015 0.90 -0.0
2,795,788 + -0.1
2,795,812 + +1.5
2,795,812 + +0.3
2,795,813 - +0.8
2,795,813 - +0.0
2,795,813 - +0.3
2,795,898 + +0.0
2,795,898 + -0.3
2,796,031 + -0.5
2,796,032 - -1.0
2,796,137 - +0.2
2,796,166 + -0.2
2,796,167 - -0.6
2,796,188 + -0.5
2,796,211 + +0.5
2,796,212 - +1.3
2,796,219 - -1.5
2,796,432 + -0.6
2,796,433 - -1.3
2,796,433 - +2.2
2,796,450 + +0.5
2,796,453 + +0.6
2,796,453 + +0.1
2,796,454 - -0.3
2,796,454 - -0.2
2,796,493 + +0.7
2,796,494 - +0.2
2,796,517 + -0.1
2,796,517 + -0.1
2,796,601 - CA264_12020 0.10 +1.6
2,796,624 + CA264_12020 0.12 +1.1
2,796,624 + CA264_12020 0.12 +0.5
2,796,649 - CA264_12020 0.15 +0.2
2,796,651 + CA264_12020 0.15 -0.6
2,796,778 - CA264_12020 0.28 -0.5
2,796,930 + CA264_12020 0.43 -0.1
2,796,931 - CA264_12020 0.43 -0.0
2,797,068 + CA264_12020 0.57 +0.6
2,797,147 - CA264_12020 0.65 +0.1
2,797,239 + CA264_12020 0.74 -1.7
2,797,371 + CA264_12020 0.87 -0.3
2,797,371 + CA264_12020 0.87 +0.1
2,797,372 - CA264_12020 0.87 +0.7
2,797,372 - CA264_12020 0.87 +0.3
2,797,372 - CA264_12020 0.87 +0.7
2,797,377 + CA264_12020 0.88 -0.4
2,797,378 - CA264_12020 0.88 -0.4
2,797,440 + -1.9
2,797,466 + +0.7
2,797,484 - -0.5
2,797,502 + -0.4
2,797,503 - -1.5
2,797,503 - +0.6
2,797,531 + -0.8
2,797,636 - CA264_12025 0.11 -0.1
2,797,663 - CA264_12025 0.13 +1.3
2,797,777 - CA264_12025 0.23 -0.6
2,797,815 + CA264_12025 0.26 +0.3
2,797,875 - CA264_12025 0.31 +0.1
2,798,030 - CA264_12025 0.44 -1.4
2,798,059 - CA264_12025 0.47 +0.7
2,798,059 - CA264_12025 0.47 -0.9
2,798,059 - CA264_12025 0.47 -0.3
2,798,115 + CA264_12025 0.51 +1.0
2,798,259 + CA264_12025 0.63 +0.0
2,798,259 + CA264_12025 0.63 -0.3
2,798,260 - CA264_12025 0.64 -0.3
2,798,260 - CA264_12025 0.64 -0.1
2,798,260 - CA264_12025 0.64 -0.9
2,798,264 - CA264_12025 0.64 -0.1
2,798,264 - CA264_12025 0.64 -0.6
2,798,264 - CA264_12025 0.64 +2.8
2,798,269 - CA264_12025 0.64 -1.0
2,798,269 - CA264_12025 0.64 -0.1
2,798,409 - CA264_12025 0.76 -1.4
2,798,430 + +2.0
2,798,431 - CA264_12025 0.78 +0.5
2,798,431 - CA264_12025 0.78 -0.9
2,798,431 - CA264_12025 0.78 +0.3
2,798,431 - CA264_12025 0.78 -0.1
2,798,432 + CA264_12025 0.78 +1.0
2,798,432 + CA264_12025 0.78 -1.2
2,798,433 - CA264_12025 0.78 -0.4

Or see this region's nucleotide sequence