Experiment: m.b. copper (II) chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_11455 and CA264_11460 are separated by 10 nucleotides CA264_11460 and CA264_11465 are separated by 455 nucleotides
CA264_11455: CA264_11455 - RagB/SusD family nutrient uptake outer membrane protein, at 2,656,082 to 2,657,776
_11455
CA264_11460: CA264_11460 - SusC/RagA family TonB-linked outer membrane protein, at 2,657,787 to 2,660,840
_11460
CA264_11465: CA264_11465 - transcriptional regulator, at 2,661,296 to 2,662,060
_11465
Position (kb)
2657
2658
2659
2660
2661 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2656.878 kb on - strand, within CA264_11455 at 2656.903 kb on - strand, within CA264_11455 at 2657.055 kb on + strand, within CA264_11455 at 2657.065 kb on - strand, within CA264_11455 at 2657.098 kb on + strand, within CA264_11455 at 2657.099 kb on - strand, within CA264_11455 at 2657.099 kb on - strand, within CA264_11455 at 2657.099 kb on - strand, within CA264_11455 at 2657.099 kb on - strand, within CA264_11455 at 2657.099 kb on - strand, within CA264_11455 at 2657.142 kb on + strand, within CA264_11455 at 2657.143 kb on - strand, within CA264_11455 at 2657.143 kb on - strand, within CA264_11455 at 2657.144 kb on + strand, within CA264_11455 at 2657.183 kb on - strand, within CA264_11455 at 2657.212 kb on - strand, within CA264_11455 at 2657.254 kb on - strand, within CA264_11455 at 2657.309 kb on + strand, within CA264_11455 at 2657.309 kb on + strand, within CA264_11455 at 2657.309 kb on + strand, within CA264_11455 at 2657.310 kb on - strand, within CA264_11455 at 2657.310 kb on - strand, within CA264_11455 at 2657.319 kb on + strand, within CA264_11455 at 2657.320 kb on - strand, within CA264_11455 at 2657.347 kb on - strand, within CA264_11455 at 2657.347 kb on - strand, within CA264_11455 at 2657.349 kb on + strand, within CA264_11455 at 2657.459 kb on + strand, within CA264_11455 at 2657.465 kb on - strand, within CA264_11455 at 2657.479 kb on + strand, within CA264_11455 at 2657.480 kb on - strand, within CA264_11455 at 2657.488 kb on - strand, within CA264_11455 at 2657.488 kb on - strand, within CA264_11455 at 2657.578 kb on + strand, within CA264_11455 at 2657.602 kb on - strand, within CA264_11455 at 2657.626 kb on - strand at 2657.635 kb on - strand at 2657.645 kb on + strand at 2657.711 kb on + strand at 2657.712 kb on - strand at 2657.732 kb on + strand at 2657.733 kb on - strand at 2657.733 kb on - strand at 2657.753 kb on + strand at 2657.753 kb on + strand at 2657.754 kb on - strand at 2657.754 kb on - strand at 2657.756 kb on - strand at 2657.756 kb on - strand at 2657.762 kb on + strand at 2657.763 kb on - strand at 2657.763 kb on - strand at 2657.803 kb on - strand at 2657.803 kb on - strand at 2657.809 kb on - strand at 2657.830 kb on + strand at 2657.830 kb on + strand at 2657.913 kb on + strand at 2657.939 kb on + strand at 2657.959 kb on + strand at 2658.021 kb on - strand at 2658.054 kb on + strand at 2658.076 kb on - strand at 2658.098 kb on - strand, within CA264_11460 at 2658.098 kb on - strand, within CA264_11460 at 2658.199 kb on - strand, within CA264_11460 at 2658.252 kb on - strand, within CA264_11460 at 2658.252 kb on - strand, within CA264_11460 at 2658.260 kb on - strand, within CA264_11460 at 2658.286 kb on - strand, within CA264_11460 at 2658.302 kb on - strand, within CA264_11460 at 2658.312 kb on + strand, within CA264_11460 at 2658.351 kb on + strand, within CA264_11460 at 2658.355 kb on + strand, within CA264_11460 at 2658.356 kb on - strand, within CA264_11460 at 2658.356 kb on - strand, within CA264_11460 at 2658.383 kb on + strand, within CA264_11460 at 2658.384 kb on - strand, within CA264_11460 at 2658.384 kb on - strand, within CA264_11460 at 2658.442 kb on + strand, within CA264_11460 at 2658.442 kb on + strand, within CA264_11460 at 2658.503 kb on + strand, within CA264_11460 at 2658.503 kb on + strand, within CA264_11460 at 2658.504 kb on - strand, within CA264_11460 at 2658.504 kb on - strand, within CA264_11460 at 2658.504 kb on - strand, within CA264_11460 at 2658.504 kb on - strand, within CA264_11460 at 2658.573 kb on + strand, within CA264_11460 at 2658.578 kb on + strand, within CA264_11460 at 2658.578 kb on + strand, within CA264_11460 at 2658.615 kb on - strand, within CA264_11460 at 2658.620 kb on + strand, within CA264_11460 at 2658.657 kb on - strand, within CA264_11460 at 2658.658 kb on + strand, within CA264_11460 at 2658.658 kb on + strand, within CA264_11460 at 2658.658 kb on + strand, within CA264_11460 at 2658.659 kb on - strand, within CA264_11460 at 2658.659 kb on - strand, within CA264_11460 at 2658.667 kb on - strand, within CA264_11460 at 2658.705 kb on - strand, within CA264_11460 at 2658.705 kb on - strand, within CA264_11460 at 2658.709 kb on + strand, within CA264_11460 at 2658.735 kb on - strand, within CA264_11460 at 2658.745 kb on + strand, within CA264_11460 at 2658.745 kb on + strand, within CA264_11460 at 2658.745 kb on + strand, within CA264_11460 at 2658.788 kb on + strand, within CA264_11460 at 2658.789 kb on - strand, within CA264_11460 at 2658.812 kb on - strand, within CA264_11460 at 2658.879 kb on - strand, within CA264_11460 at 2658.889 kb on + strand, within CA264_11460 at 2658.918 kb on + strand, within CA264_11460 at 2659.064 kb on - strand, within CA264_11460 at 2659.088 kb on - strand, within CA264_11460 at 2659.099 kb on + strand, within CA264_11460 at 2659.099 kb on + strand, within CA264_11460 at 2659.106 kb on - strand, within CA264_11460 at 2659.132 kb on + strand, within CA264_11460 at 2659.281 kb on - strand, within CA264_11460 at 2659.286 kb on + strand, within CA264_11460 at 2659.341 kb on - strand, within CA264_11460 at 2659.361 kb on - strand, within CA264_11460 at 2659.361 kb on - strand, within CA264_11460 at 2659.361 kb on - strand, within CA264_11460 at 2659.370 kb on + strand, within CA264_11460 at 2659.371 kb on - strand, within CA264_11460 at 2659.389 kb on - strand, within CA264_11460 at 2659.424 kb on - strand, within CA264_11460 at 2659.427 kb on - strand, within CA264_11460 at 2659.427 kb on - strand, within CA264_11460 at 2659.480 kb on - strand, within CA264_11460 at 2659.590 kb on + strand, within CA264_11460 at 2659.590 kb on + strand, within CA264_11460 at 2659.591 kb on - strand, within CA264_11460 at 2659.591 kb on - strand, within CA264_11460 at 2659.591 kb on - strand, within CA264_11460 at 2659.591 kb on - strand, within CA264_11460 at 2659.591 kb on - strand, within CA264_11460 at 2659.702 kb on - strand, within CA264_11460 at 2659.706 kb on + strand, within CA264_11460 at 2659.708 kb on + strand, within CA264_11460 at 2659.708 kb on + strand, within CA264_11460 at 2659.709 kb on - strand, within CA264_11460 at 2659.712 kb on + strand, within CA264_11460 at 2659.712 kb on + strand, within CA264_11460 at 2659.713 kb on - strand, within CA264_11460 at 2659.715 kb on - strand, within CA264_11460 at 2659.758 kb on - strand, within CA264_11460 at 2659.816 kb on - strand, within CA264_11460 at 2659.825 kb on + strand, within CA264_11460 at 2659.825 kb on + strand, within CA264_11460 at 2659.874 kb on + strand, within CA264_11460 at 2659.874 kb on + strand, within CA264_11460 at 2659.874 kb on + strand, within CA264_11460 at 2659.875 kb on - strand, within CA264_11460 at 2659.887 kb on - strand, within CA264_11460 at 2659.908 kb on + strand, within CA264_11460 at 2659.908 kb on + strand, within CA264_11460 at 2659.963 kb on + strand, within CA264_11460 at 2660.003 kb on + strand, within CA264_11460 at 2660.003 kb on + strand, within CA264_11460 at 2660.004 kb on - strand, within CA264_11460 at 2660.005 kb on + strand, within CA264_11460 at 2660.179 kb on - strand, within CA264_11460 at 2660.203 kb on + strand, within CA264_11460 at 2660.204 kb on - strand, within CA264_11460 at 2660.204 kb on - strand, within CA264_11460 at 2660.205 kb on + strand, within CA264_11460 at 2660.207 kb on + strand, within CA264_11460 at 2660.208 kb on - strand, within CA264_11460 at 2660.208 kb on - strand, within CA264_11460 at 2660.249 kb on + strand, within CA264_11460 at 2660.273 kb on + strand, within CA264_11460 at 2660.274 kb on - strand, within CA264_11460 at 2660.277 kb on - strand, within CA264_11460 at 2660.280 kb on - strand, within CA264_11460 at 2660.280 kb on - strand, within CA264_11460 at 2660.330 kb on + strand, within CA264_11460 at 2660.330 kb on + strand, within CA264_11460 at 2660.346 kb on + strand, within CA264_11460 at 2660.406 kb on - strand, within CA264_11460 at 2660.412 kb on + strand, within CA264_11460 at 2660.435 kb on + strand, within CA264_11460 at 2660.436 kb on - strand, within CA264_11460 at 2660.589 kb on + strand at 2660.611 kb on - strand at 2660.631 kb on - strand at 2660.657 kb on + strand at 2660.657 kb on + strand at 2660.657 kb on + strand at 2660.657 kb on + strand at 2660.658 kb on - strand at 2660.659 kb on + strand at 2660.660 kb on - strand at 2660.681 kb on + strand at 2660.682 kb on - strand at 2660.770 kb on - strand at 2660.823 kb on - strand at 2660.825 kb on - strand at 2660.825 kb on - strand at 2660.836 kb on - strand at 2660.836 kb on - strand at 2660.841 kb on - strand at 2660.846 kb on - strand at 2660.846 kb on - strand at 2660.916 kb on + strand at 2660.917 kb on - strand at 2661.142 kb on - strand at 2661.147 kb on + strand at 2661.148 kb on - strand at 2661.154 kb on + strand at 2661.158 kb on - strand at 2661.160 kb on + strand at 2661.279 kb on + strand at 2661.301 kb on + strand at 2661.369 kb on + strand at 2661.414 kb on + strand, within CA264_11465 at 2661.479 kb on + strand, within CA264_11465 at 2661.496 kb on + strand, within CA264_11465 at 2661.586 kb on + strand, within CA264_11465 at 2661.634 kb on + strand, within CA264_11465 at 2661.726 kb on + strand, within CA264_11465 at 2661.727 kb on - strand, within CA264_11465 at 2661.772 kb on + strand, within CA264_11465 at 2661.773 kb on - strand, within CA264_11465 at 2661.778 kb on - strand, within CA264_11465
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM remove 2,656,878 - CA264_11455 0.47 -1.5 2,656,903 - CA264_11455 0.48 -1.0 2,657,055 + CA264_11455 0.57 -0.4 2,657,065 - CA264_11455 0.58 +0.5 2,657,098 + CA264_11455 0.60 -0.2 2,657,099 - CA264_11455 0.60 +1.2 2,657,099 - CA264_11455 0.60 -0.6 2,657,099 - CA264_11455 0.60 -0.3 2,657,099 - CA264_11455 0.60 -0.9 2,657,099 - CA264_11455 0.60 +0.1 2,657,142 + CA264_11455 0.63 -0.4 2,657,143 - CA264_11455 0.63 -0.0 2,657,143 - CA264_11455 0.63 -0.4 2,657,144 + CA264_11455 0.63 -0.2 2,657,183 - CA264_11455 0.65 -1.3 2,657,212 - CA264_11455 0.67 -0.7 2,657,254 - CA264_11455 0.69 -1.2 2,657,309 + CA264_11455 0.72 -0.4 2,657,309 + CA264_11455 0.72 +0.2 2,657,309 + CA264_11455 0.72 -0.9 2,657,310 - CA264_11455 0.72 -0.6 2,657,310 - CA264_11455 0.72 +0.5 2,657,319 + CA264_11455 0.73 -1.4 2,657,320 - CA264_11455 0.73 +0.1 2,657,347 - CA264_11455 0.75 +1.3 2,657,347 - CA264_11455 0.75 -1.5 2,657,349 + CA264_11455 0.75 +1.0 2,657,459 + CA264_11455 0.81 -0.4 2,657,465 - CA264_11455 0.82 -0.0 2,657,479 + CA264_11455 0.82 +0.5 2,657,480 - CA264_11455 0.82 -0.5 2,657,488 - CA264_11455 0.83 -0.6 2,657,488 - CA264_11455 0.83 -0.9 2,657,578 + CA264_11455 0.88 +1.0 2,657,602 - CA264_11455 0.90 -0.3 2,657,626 - -0.4 2,657,635 - -1.3 2,657,645 + +0.0 2,657,711 + +0.2 2,657,712 - +0.2 2,657,732 + -1.2 2,657,733 - -0.3 2,657,733 - -0.4 2,657,753 + -0.5 2,657,753 + +0.0 2,657,754 - -0.4 2,657,754 - -0.7 2,657,756 - -0.4 2,657,756 - -0.7 2,657,762 + +0.2 2,657,763 - -0.2 2,657,763 - -0.3 2,657,803 - -0.7 2,657,803 - +0.1 2,657,809 - -2.0 2,657,830 + -0.4 2,657,830 + -1.1 2,657,913 + -0.1 2,657,939 + +1.7 2,657,959 + -0.1 2,658,021 - -0.6 2,658,054 + +1.2 2,658,076 - -1.1 2,658,098 - CA264_11460 0.10 -1.3 2,658,098 - CA264_11460 0.10 -0.6 2,658,199 - CA264_11460 0.13 -0.4 2,658,252 - CA264_11460 0.15 -0.6 2,658,252 - CA264_11460 0.15 -0.4 2,658,260 - CA264_11460 0.15 -0.2 2,658,286 - CA264_11460 0.16 -1.2 2,658,302 - CA264_11460 0.17 -0.5 2,658,312 + CA264_11460 0.17 +0.6 2,658,351 + CA264_11460 0.18 +0.3 2,658,355 + CA264_11460 0.19 -1.9 2,658,356 - CA264_11460 0.19 -0.3 2,658,356 - CA264_11460 0.19 -0.7 2,658,383 + CA264_11460 0.20 +0.6 2,658,384 - CA264_11460 0.20 -0.7 2,658,384 - CA264_11460 0.20 -1.0 2,658,442 + CA264_11460 0.21 +0.8 2,658,442 + CA264_11460 0.21 +0.5 2,658,503 + CA264_11460 0.23 -0.7 2,658,503 + CA264_11460 0.23 -1.4 2,658,504 - CA264_11460 0.23 -0.4 2,658,504 - CA264_11460 0.23 -0.7 2,658,504 - CA264_11460 0.23 -0.3 2,658,504 - CA264_11460 0.23 -0.9 2,658,573 + CA264_11460 0.26 -0.5 2,658,578 + CA264_11460 0.26 -0.0 2,658,578 + CA264_11460 0.26 +0.4 2,658,615 - CA264_11460 0.27 -1.0 2,658,620 + CA264_11460 0.27 -1.0 2,658,657 - CA264_11460 0.28 -0.0 2,658,658 + CA264_11460 0.29 -0.1 2,658,658 + CA264_11460 0.29 +1.1 2,658,658 + CA264_11460 0.29 +0.9 2,658,659 - CA264_11460 0.29 +0.0 2,658,659 - CA264_11460 0.29 -0.3 2,658,667 - CA264_11460 0.29 -0.4 2,658,705 - CA264_11460 0.30 -1.0 2,658,705 - CA264_11460 0.30 -1.4 2,658,709 + CA264_11460 0.30 -2.2 2,658,735 - CA264_11460 0.31 +0.1 2,658,745 + CA264_11460 0.31 +1.1 2,658,745 + CA264_11460 0.31 -0.1 2,658,745 + CA264_11460 0.31 -0.2 2,658,788 + CA264_11460 0.33 -0.1 2,658,789 - CA264_11460 0.33 -1.6 2,658,812 - CA264_11460 0.34 -0.7 2,658,879 - CA264_11460 0.36 -0.6 2,658,889 + CA264_11460 0.36 -0.2 2,658,918 + CA264_11460 0.37 -2.4 2,659,064 - CA264_11460 0.42 -1.3 2,659,088 - CA264_11460 0.43 -0.6 2,659,099 + CA264_11460 0.43 -0.1 2,659,099 + CA264_11460 0.43 +0.6 2,659,106 - CA264_11460 0.43 +0.0 2,659,132 + CA264_11460 0.44 -0.1 2,659,281 - CA264_11460 0.49 +1.9 2,659,286 + CA264_11460 0.49 +0.1 2,659,341 - CA264_11460 0.51 +0.1 2,659,361 - CA264_11460 0.52 -1.2 2,659,361 - CA264_11460 0.52 +0.0 2,659,361 - CA264_11460 0.52 +0.2 2,659,370 + CA264_11460 0.52 +0.4 2,659,371 - CA264_11460 0.52 -1.5 2,659,389 - CA264_11460 0.52 -1.5 2,659,424 - CA264_11460 0.54 +0.6 2,659,427 - CA264_11460 0.54 +1.0 2,659,427 - CA264_11460 0.54 -0.3 2,659,480 - CA264_11460 0.55 +0.4 2,659,590 + CA264_11460 0.59 +0.5 2,659,590 + CA264_11460 0.59 +0.2 2,659,591 - CA264_11460 0.59 -0.3 2,659,591 - CA264_11460 0.59 +1.0 2,659,591 - CA264_11460 0.59 +0.3 2,659,591 - CA264_11460 0.59 -0.3 2,659,591 - CA264_11460 0.59 -0.3 2,659,702 - CA264_11460 0.63 +0.6 2,659,706 + CA264_11460 0.63 -0.9 2,659,708 + CA264_11460 0.63 -0.2 2,659,708 + CA264_11460 0.63 -1.2 2,659,709 - CA264_11460 0.63 -0.4 2,659,712 + CA264_11460 0.63 +0.4 2,659,712 + CA264_11460 0.63 -0.1 2,659,713 - CA264_11460 0.63 -0.8 2,659,715 - CA264_11460 0.63 -0.5 2,659,758 - CA264_11460 0.65 -0.2 2,659,816 - CA264_11460 0.66 -0.5 2,659,825 + CA264_11460 0.67 +0.2 2,659,825 + CA264_11460 0.67 +0.8 2,659,874 + CA264_11460 0.68 -0.3 2,659,874 + CA264_11460 0.68 +0.7 2,659,874 + CA264_11460 0.68 +0.5 2,659,875 - CA264_11460 0.68 -0.9 2,659,887 - CA264_11460 0.69 -0.2 2,659,908 + CA264_11460 0.69 +0.1 2,659,908 + CA264_11460 0.69 +0.1 2,659,963 + CA264_11460 0.71 +0.1 2,660,003 + CA264_11460 0.73 +0.3 2,660,003 + CA264_11460 0.73 +0.5 2,660,004 - CA264_11460 0.73 +1.5 2,660,005 + CA264_11460 0.73 +0.8 2,660,179 - CA264_11460 0.78 -1.0 2,660,203 + CA264_11460 0.79 +0.3 2,660,204 - CA264_11460 0.79 +0.5 2,660,204 - CA264_11460 0.79 +0.0 2,660,205 + CA264_11460 0.79 -0.2 2,660,207 + CA264_11460 0.79 +0.2 2,660,208 - CA264_11460 0.79 -0.3 2,660,208 - CA264_11460 0.79 -0.1 2,660,249 + CA264_11460 0.81 +0.3 2,660,273 + CA264_11460 0.81 +2.0 2,660,274 - CA264_11460 0.81 +0.1 2,660,277 - CA264_11460 0.82 -0.5 2,660,280 - CA264_11460 0.82 -0.5 2,660,280 - CA264_11460 0.82 +0.1 2,660,330 + CA264_11460 0.83 +0.2 2,660,330 + CA264_11460 0.83 +0.8 2,660,346 + CA264_11460 0.84 +0.6 2,660,406 - CA264_11460 0.86 -0.2 2,660,412 + CA264_11460 0.86 -0.4 2,660,435 + CA264_11460 0.87 +1.7 2,660,436 - CA264_11460 0.87 +0.1 2,660,589 + +0.7 2,660,611 - -0.1 2,660,631 - -0.1 2,660,657 + -1.4 2,660,657 + +0.0 2,660,657 + -0.3 2,660,657 + +0.7 2,660,658 - -0.8 2,660,659 + +0.2 2,660,660 - +0.2 2,660,681 + +0.5 2,660,682 - +0.0 2,660,770 - -1.2 2,660,823 - -0.8 2,660,825 - +0.2 2,660,825 - -0.0 2,660,836 - +0.2 2,660,836 - -0.3 2,660,841 - -0.4 2,660,846 - -0.8 2,660,846 - -1.8 2,660,916 + -1.1 2,660,917 - -0.7 2,661,142 - -1.5 2,661,147 + -1.2 2,661,148 - -0.9 2,661,154 + -0.1 2,661,158 - -0.4 2,661,160 + -0.4 2,661,279 + -0.0 2,661,301 + -1.2 2,661,369 + -0.4 2,661,414 + CA264_11465 0.15 -0.7 2,661,479 + CA264_11465 0.24 -0.8 2,661,496 + CA264_11465 0.26 +1.0 2,661,586 + CA264_11465 0.38 +1.3 2,661,634 + CA264_11465 0.44 -1.0 2,661,726 + CA264_11465 0.56 -0.2 2,661,727 - CA264_11465 0.56 -0.9 2,661,772 + CA264_11465 0.62 +0.7 2,661,773 - CA264_11465 0.62 -0.1 2,661,778 - CA264_11465 0.63 +0.6
Or see this region's nucleotide sequence