Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09690

Experiment: m.b. copper (II) chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09680 and CA264_09685 are separated by 75 nucleotidesCA264_09685 and CA264_09690 are separated by 135 nucleotidesCA264_09690 and CA264_09695 are separated by 162 nucleotides CA264_09680: CA264_09680 - hypothetical protein, at 2,250,619 to 2,251,356 _09680 CA264_09685: CA264_09685 - hypothetical protein, at 2,251,432 to 2,251,821 _09685 CA264_09690: CA264_09690 - hypothetical protein, at 2,251,957 to 2,252,334 _09690 CA264_09695: CA264_09695 - integrase, at 2,252,497 to 2,253,924 _09695 Position (kb) 2251 2252 2253Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2250.958 kb on + strand, within CA264_09680at 2250.964 kb on + strand, within CA264_09680at 2250.964 kb on + strand, within CA264_09680at 2250.970 kb on - strand, within CA264_09680at 2251.023 kb on - strand, within CA264_09680at 2251.031 kb on + strand, within CA264_09680at 2251.143 kb on + strand, within CA264_09680at 2251.159 kb on + strand, within CA264_09680at 2251.160 kb on - strand, within CA264_09680at 2251.161 kb on + strand, within CA264_09680at 2251.161 kb on + strand, within CA264_09680at 2251.162 kb on - strand, within CA264_09680at 2251.162 kb on - strand, within CA264_09680at 2251.162 kb on - strand, within CA264_09680at 2251.164 kb on + strand, within CA264_09680at 2251.165 kb on - strand, within CA264_09680at 2251.165 kb on - strand, within CA264_09680at 2251.165 kb on - strand, within CA264_09680at 2251.205 kb on + strand, within CA264_09680at 2251.373 kb on - strandat 2251.373 kb on - strandat 2251.373 kb on - strandat 2251.385 kb on + strandat 2251.418 kb on + strandat 2251.451 kb on + strandat 2251.459 kb on + strandat 2251.470 kb on + strandat 2251.553 kb on - strand, within CA264_09685at 2251.573 kb on + strand, within CA264_09685at 2251.573 kb on + strand, within CA264_09685at 2251.611 kb on + strand, within CA264_09685at 2251.611 kb on + strand, within CA264_09685at 2251.611 kb on + strand, within CA264_09685at 2251.612 kb on - strand, within CA264_09685at 2251.630 kb on - strand, within CA264_09685at 2251.639 kb on + strand, within CA264_09685at 2251.645 kb on + strand, within CA264_09685at 2251.646 kb on - strand, within CA264_09685at 2251.649 kb on - strand, within CA264_09685at 2251.649 kb on - strand, within CA264_09685at 2251.672 kb on + strand, within CA264_09685at 2251.673 kb on - strand, within CA264_09685at 2251.673 kb on - strand, within CA264_09685at 2251.700 kb on - strand, within CA264_09685at 2251.700 kb on - strand, within CA264_09685at 2251.714 kb on + strand, within CA264_09685at 2251.714 kb on + strand, within CA264_09685at 2251.715 kb on - strand, within CA264_09685at 2251.715 kb on - strand, within CA264_09685at 2251.715 kb on - strand, within CA264_09685at 2251.715 kb on - strand, within CA264_09685at 2251.727 kb on + strand, within CA264_09685at 2251.735 kb on - strand, within CA264_09685at 2251.833 kb on + strandat 2251.834 kb on - strandat 2251.859 kb on - strandat 2251.959 kb on - strandat 2251.959 kb on - strandat 2251.961 kb on - strandat 2251.961 kb on - strandat 2251.962 kb on + strandat 2251.963 kb on - strandat 2252.014 kb on - strand, within CA264_09690at 2252.055 kb on + strand, within CA264_09690at 2252.056 kb on - strand, within CA264_09690at 2252.058 kb on - strand, within CA264_09690at 2252.098 kb on + strand, within CA264_09690at 2252.152 kb on - strand, within CA264_09690at 2252.209 kb on + strand, within CA264_09690at 2252.210 kb on - strand, within CA264_09690at 2252.210 kb on - strand, within CA264_09690at 2252.281 kb on + strand, within CA264_09690at 2252.324 kb on - strandat 2252.340 kb on - strandat 2252.355 kb on - strandat 2252.355 kb on - strandat 2252.359 kb on + strandat 2252.359 kb on + strandat 2252.359 kb on + strandat 2252.360 kb on - strandat 2252.360 kb on - strandat 2252.360 kb on - strandat 2252.360 kb on - strandat 2252.374 kb on - strandat 2252.379 kb on + strandat 2252.379 kb on + strandat 2252.380 kb on - strandat 2252.392 kb on + strandat 2252.392 kb on + strandat 2252.392 kb on + strandat 2252.392 kb on + strandat 2252.392 kb on + strandat 2252.393 kb on - strandat 2252.396 kb on + strandat 2252.397 kb on - strandat 2252.443 kb on - strandat 2252.463 kb on + strandat 2252.469 kb on + strandat 2252.469 kb on + strandat 2252.469 kb on + strandat 2252.470 kb on - strandat 2252.470 kb on - strandat 2252.471 kb on + strandat 2252.472 kb on - strandat 2252.482 kb on + strandat 2252.483 kb on - strandat 2252.483 kb on - strandat 2252.555 kb on + strandat 2252.556 kb on - strandat 2252.780 kb on + strand, within CA264_09695at 2252.781 kb on - strand, within CA264_09695at 2252.787 kb on + strand, within CA264_09695at 2252.788 kb on - strand, within CA264_09695at 2252.789 kb on + strand, within CA264_09695at 2252.790 kb on - strand, within CA264_09695at 2252.790 kb on - strand, within CA264_09695at 2253.064 kb on + strand, within CA264_09695at 2253.070 kb on + strand, within CA264_09695at 2253.070 kb on + strand, within CA264_09695at 2253.102 kb on - strand, within CA264_09695at 2253.130 kb on + strand, within CA264_09695at 2253.130 kb on + strand, within CA264_09695at 2253.130 kb on + strand, within CA264_09695at 2253.133 kb on - strand, within CA264_09695at 2253.177 kb on - strand, within CA264_09695at 2253.231 kb on + strand, within CA264_09695at 2253.232 kb on - strand, within CA264_09695at 2253.266 kb on + strand, within CA264_09695at 2253.291 kb on - strand, within CA264_09695at 2253.291 kb on - strand, within CA264_09695

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM
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2,250,958 + CA264_09680 0.46 +0.8
2,250,964 + CA264_09680 0.47 -0.1
2,250,964 + CA264_09680 0.47 +0.3
2,250,970 - CA264_09680 0.48 -0.7
2,251,023 - CA264_09680 0.55 -0.2
2,251,031 + CA264_09680 0.56 -0.2
2,251,143 + CA264_09680 0.71 +3.0
2,251,159 + CA264_09680 0.73 +1.1
2,251,160 - CA264_09680 0.73 -1.2
2,251,161 + CA264_09680 0.73 +0.7
2,251,161 + CA264_09680 0.73 +0.2
2,251,162 - CA264_09680 0.74 -0.1
2,251,162 - CA264_09680 0.74 +0.1
2,251,162 - CA264_09680 0.74 -2.1
2,251,164 + CA264_09680 0.74 -0.8
2,251,165 - CA264_09680 0.74 +0.5
2,251,165 - CA264_09680 0.74 -0.0
2,251,165 - CA264_09680 0.74 +0.0
2,251,205 + CA264_09680 0.79 +0.6
2,251,373 - -0.4
2,251,373 - +0.6
2,251,373 - +0.3
2,251,385 + +0.0
2,251,418 + +0.1
2,251,451 + +1.3
2,251,459 + +0.0
2,251,470 + -0.0
2,251,553 - CA264_09685 0.31 -0.2
2,251,573 + CA264_09685 0.36 +0.2
2,251,573 + CA264_09685 0.36 -0.0
2,251,611 + CA264_09685 0.46 +0.4
2,251,611 + CA264_09685 0.46 +0.0
2,251,611 + CA264_09685 0.46 +0.3
2,251,612 - CA264_09685 0.46 -1.2
2,251,630 - CA264_09685 0.51 +0.0
2,251,639 + CA264_09685 0.53 -0.7
2,251,645 + CA264_09685 0.55 -0.3
2,251,646 - CA264_09685 0.55 -0.2
2,251,649 - CA264_09685 0.56 -0.4
2,251,649 - CA264_09685 0.56 +0.9
2,251,672 + CA264_09685 0.62 -0.2
2,251,673 - CA264_09685 0.62 +0.1
2,251,673 - CA264_09685 0.62 -0.6
2,251,700 - CA264_09685 0.69 +0.1
2,251,700 - CA264_09685 0.69 +0.3
2,251,714 + CA264_09685 0.72 +0.6
2,251,714 + CA264_09685 0.72 -0.3
2,251,715 - CA264_09685 0.73 +0.3
2,251,715 - CA264_09685 0.73 +1.4
2,251,715 - CA264_09685 0.73 -0.8
2,251,715 - CA264_09685 0.73 -0.3
2,251,727 + CA264_09685 0.76 -0.7
2,251,735 - CA264_09685 0.78 -0.5
2,251,833 + +0.0
2,251,834 - -0.1
2,251,859 - -1.2
2,251,959 - -0.7
2,251,959 - -1.1
2,251,961 - -2.6
2,251,961 - -0.9
2,251,962 + -0.2
2,251,963 - -0.5
2,252,014 - CA264_09690 0.15 +0.0
2,252,055 + CA264_09690 0.26 -0.8
2,252,056 - CA264_09690 0.26 -0.9
2,252,058 - CA264_09690 0.27 +0.4
2,252,098 + CA264_09690 0.37 +0.2
2,252,152 - CA264_09690 0.52 +0.7
2,252,209 + CA264_09690 0.67 -0.9
2,252,210 - CA264_09690 0.67 +0.1
2,252,210 - CA264_09690 0.67 -0.6
2,252,281 + CA264_09690 0.86 +0.7
2,252,324 - -1.6
2,252,340 - +0.6
2,252,355 - -0.3
2,252,355 - -0.2
2,252,359 + -0.3
2,252,359 + -0.7
2,252,359 + -0.4
2,252,360 - -0.9
2,252,360 - -0.6
2,252,360 - +0.3
2,252,360 - +0.4
2,252,374 - +0.4
2,252,379 + -0.5
2,252,379 + -0.2
2,252,380 - +1.5
2,252,392 + -0.3
2,252,392 + -0.4
2,252,392 + -0.2
2,252,392 + -0.3
2,252,392 + -0.1
2,252,393 - +1.0
2,252,396 + +0.1
2,252,397 - +0.5
2,252,443 - -1.0
2,252,463 + -0.2
2,252,469 + -1.6
2,252,469 + +0.0
2,252,469 + -1.0
2,252,470 - +0.2
2,252,470 - +0.6
2,252,471 + -0.1
2,252,472 - -0.4
2,252,482 + +0.4
2,252,483 - +0.0
2,252,483 - +2.0
2,252,555 + -0.8
2,252,556 - -1.7
2,252,780 + CA264_09695 0.20 -2.0
2,252,781 - CA264_09695 0.20 -0.2
2,252,787 + CA264_09695 0.20 -0.4
2,252,788 - CA264_09695 0.20 -0.7
2,252,789 + CA264_09695 0.20 +1.1
2,252,790 - CA264_09695 0.21 -0.7
2,252,790 - CA264_09695 0.21 +0.0
2,253,064 + CA264_09695 0.40 +0.6
2,253,070 + CA264_09695 0.40 +0.8
2,253,070 + CA264_09695 0.40 -0.8
2,253,102 - CA264_09695 0.42 -0.1
2,253,130 + CA264_09695 0.44 -0.4
2,253,130 + CA264_09695 0.44 -0.7
2,253,130 + CA264_09695 0.44 -1.3
2,253,133 - CA264_09695 0.45 -2.0
2,253,177 - CA264_09695 0.48 -0.2
2,253,231 + CA264_09695 0.51 -0.3
2,253,232 - CA264_09695 0.51 +0.0
2,253,266 + CA264_09695 0.54 -0.1
2,253,291 - CA264_09695 0.56 -0.1
2,253,291 - CA264_09695 0.56 +0.1

Or see this region's nucleotide sequence