Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09635

Experiment: m.b. copper (II) chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09625 and CA264_09630 are separated by 146 nucleotidesCA264_09630 and CA264_09635 are separated by 118 nucleotidesCA264_09635 and CA264_09640 are separated by 98 nucleotidesCA264_09640 and CA264_09645 are separated by 89 nucleotides CA264_09625: CA264_09625 - hypothetical protein, at 2,243,685 to 2,244,100 _09625 CA264_09630: CA264_09630 - hypothetical protein, at 2,244,247 to 2,244,885 _09630 CA264_09635: CA264_09635 - hypothetical protein, at 2,245,004 to 2,245,669 _09635 CA264_09640: CA264_09640 - hypothetical protein, at 2,245,768 to 2,246,403 _09640 CA264_09645: CA264_09645 - hypothetical protein, at 2,246,493 to 2,246,888 _09645 Position (kb) 2245 2246Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2244.010 kb on - strand, within CA264_09625at 2244.010 kb on - strand, within CA264_09625at 2244.012 kb on + strand, within CA264_09625at 2244.012 kb on + strand, within CA264_09625at 2244.048 kb on - strand, within CA264_09625at 2244.048 kb on - strand, within CA264_09625at 2244.048 kb on - strand, within CA264_09625at 2244.080 kb on - strandat 2244.081 kb on + strandat 2244.148 kb on - strandat 2244.157 kb on + strandat 2244.187 kb on + strandat 2244.188 kb on - strandat 2244.188 kb on - strandat 2244.188 kb on - strandat 2244.188 kb on - strandat 2244.188 kb on - strandat 2244.189 kb on + strandat 2244.190 kb on - strandat 2244.190 kb on - strandat 2244.192 kb on + strandat 2244.193 kb on - strandat 2244.212 kb on + strandat 2244.249 kb on - strandat 2244.285 kb on + strandat 2244.305 kb on - strandat 2244.305 kb on - strandat 2244.360 kb on + strand, within CA264_09630at 2244.367 kb on - strand, within CA264_09630at 2244.368 kb on - strand, within CA264_09630at 2244.425 kb on + strand, within CA264_09630at 2244.463 kb on + strand, within CA264_09630at 2244.464 kb on - strand, within CA264_09630at 2244.508 kb on - strand, within CA264_09630at 2244.547 kb on + strand, within CA264_09630at 2244.548 kb on - strand, within CA264_09630at 2244.551 kb on - strand, within CA264_09630at 2244.553 kb on + strand, within CA264_09630at 2244.567 kb on + strand, within CA264_09630at 2244.589 kb on - strand, within CA264_09630at 2244.590 kb on + strand, within CA264_09630at 2244.591 kb on - strand, within CA264_09630at 2244.608 kb on + strand, within CA264_09630at 2244.609 kb on - strand, within CA264_09630at 2244.609 kb on - strand, within CA264_09630at 2244.609 kb on - strand, within CA264_09630at 2244.623 kb on + strand, within CA264_09630at 2244.638 kb on - strand, within CA264_09630at 2244.659 kb on - strand, within CA264_09630at 2244.665 kb on + strand, within CA264_09630at 2244.665 kb on + strand, within CA264_09630at 2244.666 kb on - strand, within CA264_09630at 2244.666 kb on - strand, within CA264_09630at 2244.666 kb on - strand, within CA264_09630at 2244.666 kb on - strand, within CA264_09630at 2244.666 kb on - strand, within CA264_09630at 2244.709 kb on - strand, within CA264_09630at 2244.761 kb on + strand, within CA264_09630at 2244.770 kb on + strand, within CA264_09630at 2244.783 kb on + strand, within CA264_09630at 2244.792 kb on - strand, within CA264_09630at 2244.796 kb on + strand, within CA264_09630at 2244.835 kb on + strandat 2244.836 kb on - strandat 2244.850 kb on + strandat 2244.856 kb on + strandat 2244.856 kb on + strandat 2244.856 kb on + strandat 2244.863 kb on - strandat 2244.892 kb on + strandat 2244.892 kb on + strandat 2244.892 kb on + strandat 2244.979 kb on + strandat 2244.980 kb on - strandat 2244.980 kb on - strandat 2244.985 kb on + strandat 2245.003 kb on - strandat 2245.005 kb on + strandat 2245.038 kb on - strandat 2245.089 kb on + strand, within CA264_09635at 2245.149 kb on - strand, within CA264_09635at 2245.185 kb on - strand, within CA264_09635at 2245.203 kb on + strand, within CA264_09635at 2245.284 kb on + strand, within CA264_09635at 2245.320 kb on - strand, within CA264_09635at 2245.330 kb on + strand, within CA264_09635at 2245.342 kb on + strand, within CA264_09635at 2245.382 kb on + strand, within CA264_09635at 2245.530 kb on - strand, within CA264_09635at 2245.530 kb on - strand, within CA264_09635at 2245.558 kb on + strand, within CA264_09635at 2245.591 kb on + strand, within CA264_09635at 2245.596 kb on - strand, within CA264_09635at 2245.655 kb on - strandat 2245.698 kb on + strandat 2245.699 kb on - strandat 2245.717 kb on + strandat 2245.718 kb on - strandat 2245.745 kb on - strandat 2245.745 kb on - strandat 2245.756 kb on - strandat 2245.756 kb on - strandat 2245.763 kb on + strandat 2245.770 kb on - strandat 2245.770 kb on - strandat 2245.841 kb on + strand, within CA264_09640at 2245.841 kb on + strand, within CA264_09640at 2245.841 kb on + strand, within CA264_09640at 2245.842 kb on - strand, within CA264_09640at 2245.916 kb on + strand, within CA264_09640at 2245.936 kb on + strand, within CA264_09640at 2245.957 kb on - strand, within CA264_09640at 2245.987 kb on + strand, within CA264_09640at 2245.987 kb on + strand, within CA264_09640at 2246.007 kb on + strand, within CA264_09640at 2246.022 kb on + strand, within CA264_09640at 2246.024 kb on + strand, within CA264_09640at 2246.031 kb on + strand, within CA264_09640at 2246.036 kb on - strand, within CA264_09640at 2246.047 kb on + strand, within CA264_09640at 2246.078 kb on - strand, within CA264_09640at 2246.078 kb on - strand, within CA264_09640at 2246.078 kb on - strand, within CA264_09640at 2246.083 kb on - strand, within CA264_09640at 2246.083 kb on - strand, within CA264_09640at 2246.102 kb on - strand, within CA264_09640at 2246.219 kb on - strand, within CA264_09640at 2246.248 kb on - strand, within CA264_09640at 2246.255 kb on + strand, within CA264_09640at 2246.289 kb on + strand, within CA264_09640at 2246.290 kb on - strand, within CA264_09640at 2246.365 kb on - strandat 2246.384 kb on - strandat 2246.420 kb on + strandat 2246.495 kb on - strandat 2246.516 kb on + strandat 2246.608 kb on - strand, within CA264_09645

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM
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2,244,010 - CA264_09625 0.78 +0.4
2,244,010 - CA264_09625 0.78 -0.2
2,244,012 + CA264_09625 0.79 +0.5
2,244,012 + CA264_09625 0.79 +0.2
2,244,048 - CA264_09625 0.87 -0.1
2,244,048 - CA264_09625 0.87 -0.8
2,244,048 - CA264_09625 0.87 -0.4
2,244,080 - -0.2
2,244,081 + +0.3
2,244,148 - +0.3
2,244,157 + +0.7
2,244,187 + +0.7
2,244,188 - -0.1
2,244,188 - -0.5
2,244,188 - -0.7
2,244,188 - -1.6
2,244,188 - -0.6
2,244,189 + +0.7
2,244,190 - +0.2
2,244,190 - +1.9
2,244,192 + +1.1
2,244,193 - -0.4
2,244,212 + +0.7
2,244,249 - +0.0
2,244,285 + +0.3
2,244,305 - -0.4
2,244,305 - +0.0
2,244,360 + CA264_09630 0.18 +0.6
2,244,367 - CA264_09630 0.19 -3.3
2,244,368 - CA264_09630 0.19 +0.3
2,244,425 + CA264_09630 0.28 +0.4
2,244,463 + CA264_09630 0.34 +0.7
2,244,464 - CA264_09630 0.34 +0.1
2,244,508 - CA264_09630 0.41 +0.4
2,244,547 + CA264_09630 0.47 -0.6
2,244,548 - CA264_09630 0.47 +0.0
2,244,551 - CA264_09630 0.48 -0.7
2,244,553 + CA264_09630 0.48 +1.2
2,244,567 + CA264_09630 0.50 -0.1
2,244,589 - CA264_09630 0.54 +0.6
2,244,590 + CA264_09630 0.54 -0.5
2,244,591 - CA264_09630 0.54 +1.6
2,244,608 + CA264_09630 0.56 -1.7
2,244,609 - CA264_09630 0.57 -0.5
2,244,609 - CA264_09630 0.57 +0.0
2,244,609 - CA264_09630 0.57 -0.7
2,244,623 + CA264_09630 0.59 -0.4
2,244,638 - CA264_09630 0.61 -1.5
2,244,659 - CA264_09630 0.64 +0.1
2,244,665 + CA264_09630 0.65 +1.8
2,244,665 + CA264_09630 0.65 -0.7
2,244,666 - CA264_09630 0.66 -0.7
2,244,666 - CA264_09630 0.66 +0.2
2,244,666 - CA264_09630 0.66 +0.4
2,244,666 - CA264_09630 0.66 +0.4
2,244,666 - CA264_09630 0.66 -0.2
2,244,709 - CA264_09630 0.72 -0.4
2,244,761 + CA264_09630 0.80 +0.4
2,244,770 + CA264_09630 0.82 -0.9
2,244,783 + CA264_09630 0.84 +0.5
2,244,792 - CA264_09630 0.85 +0.3
2,244,796 + CA264_09630 0.86 +1.8
2,244,835 + +0.4
2,244,836 - -0.3
2,244,850 + +0.2
2,244,856 + +0.6
2,244,856 + +1.2
2,244,856 + +1.1
2,244,863 - +0.3
2,244,892 + -0.1
2,244,892 + -1.2
2,244,892 + +0.8
2,244,979 + +0.0
2,244,980 - -0.1
2,244,980 - -0.3
2,244,985 + -0.1
2,245,003 - -1.3
2,245,005 + +0.7
2,245,038 - -0.4
2,245,089 + CA264_09635 0.13 +0.8
2,245,149 - CA264_09635 0.22 +0.5
2,245,185 - CA264_09635 0.27 -0.7
2,245,203 + CA264_09635 0.30 -0.4
2,245,284 + CA264_09635 0.42 -0.6
2,245,320 - CA264_09635 0.47 -0.2
2,245,330 + CA264_09635 0.49 +0.5
2,245,342 + CA264_09635 0.51 -0.8
2,245,382 + CA264_09635 0.57 -0.2
2,245,530 - CA264_09635 0.79 -0.2
2,245,530 - CA264_09635 0.79 +0.4
2,245,558 + CA264_09635 0.83 -0.5
2,245,591 + CA264_09635 0.88 +0.7
2,245,596 - CA264_09635 0.89 -0.0
2,245,655 - -3.5
2,245,698 + -0.2
2,245,699 - +0.0
2,245,717 + +1.3
2,245,718 - +0.2
2,245,745 - -0.2
2,245,745 - +0.2
2,245,756 - +0.1
2,245,756 - +0.5
2,245,763 + +0.4
2,245,770 - +0.3
2,245,770 - -0.5
2,245,841 + CA264_09640 0.11 +0.9
2,245,841 + CA264_09640 0.11 +1.3
2,245,841 + CA264_09640 0.11 +0.8
2,245,842 - CA264_09640 0.12 +0.8
2,245,916 + CA264_09640 0.23 +1.1
2,245,936 + CA264_09640 0.26 +1.4
2,245,957 - CA264_09640 0.30 -0.9
2,245,987 + CA264_09640 0.34 +1.2
2,245,987 + CA264_09640 0.34 +0.3
2,246,007 + CA264_09640 0.38 -0.5
2,246,022 + CA264_09640 0.40 +0.4
2,246,024 + CA264_09640 0.40 -2.0
2,246,031 + CA264_09640 0.41 +0.1
2,246,036 - CA264_09640 0.42 +0.4
2,246,047 + CA264_09640 0.44 +1.0
2,246,078 - CA264_09640 0.49 +0.8
2,246,078 - CA264_09640 0.49 +0.0
2,246,078 - CA264_09640 0.49 +0.9
2,246,083 - CA264_09640 0.50 -0.7
2,246,083 - CA264_09640 0.50 -1.3
2,246,102 - CA264_09640 0.53 -0.1
2,246,219 - CA264_09640 0.71 +1.1
2,246,248 - CA264_09640 0.75 -0.1
2,246,255 + CA264_09640 0.77 +0.7
2,246,289 + CA264_09640 0.82 -1.1
2,246,290 - CA264_09640 0.82 +0.0
2,246,365 - -0.2
2,246,384 - +0.4
2,246,420 + +0.7
2,246,495 - -0.3
2,246,516 + +0.4
2,246,608 - CA264_09645 0.29 +0.8

Or see this region's nucleotide sequence