Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09505

Experiment: m.b. copper (II) chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09495 and CA264_09500 are separated by 24 nucleotidesCA264_09500 and CA264_09505 are separated by 42 nucleotidesCA264_09505 and CA264_09510 are separated by 371 nucleotides CA264_09495: CA264_09495 - potassium-transporting ATPase subunit KdpA, at 2,218,915 to 2,220,612 _09495 CA264_09500: CA264_09500 - potassium-transporting ATPase subunit F, at 2,220,637 to 2,220,714 _09500 CA264_09505: CA264_09505 - hypothetical protein, at 2,220,757 to 2,221,107 _09505 CA264_09510: CA264_09510 - sigma-54-dependent Fis family transcriptional regulator, at 2,221,479 to 2,222,834 _09510 Position (kb) 2220 2221 2222Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2219.786 kb on + strand, within CA264_09495at 2219.818 kb on + strand, within CA264_09495at 2219.862 kb on + strand, within CA264_09495at 2219.862 kb on + strand, within CA264_09495at 2219.988 kb on + strand, within CA264_09495at 2219.988 kb on + strand, within CA264_09495at 2219.988 kb on + strand, within CA264_09495at 2220.041 kb on - strand, within CA264_09495at 2220.041 kb on - strand, within CA264_09495at 2220.041 kb on - strand, within CA264_09495at 2220.062 kb on - strand, within CA264_09495at 2220.171 kb on + strand, within CA264_09495at 2220.227 kb on + strand, within CA264_09495at 2220.251 kb on + strand, within CA264_09495at 2220.251 kb on + strand, within CA264_09495at 2220.252 kb on - strand, within CA264_09495at 2220.292 kb on - strand, within CA264_09495at 2220.294 kb on + strand, within CA264_09495at 2220.420 kb on + strand, within CA264_09495at 2220.421 kb on - strand, within CA264_09495at 2220.421 kb on - strand, within CA264_09495at 2220.525 kb on - strandat 2220.527 kb on - strandat 2220.539 kb on + strandat 2220.539 kb on + strandat 2220.539 kb on + strandat 2220.539 kb on + strandat 2220.539 kb on + strandat 2220.598 kb on + strandat 2220.599 kb on - strandat 2220.599 kb on - strandat 2220.599 kb on - strandat 2220.599 kb on - strandat 2220.600 kb on + strandat 2220.600 kb on + strandat 2220.601 kb on - strandat 2220.601 kb on - strandat 2220.639 kb on - strandat 2220.674 kb on + strand, within CA264_09500at 2220.695 kb on - strand, within CA264_09500at 2220.715 kb on - strandat 2220.727 kb on + strandat 2220.729 kb on + strandat 2220.730 kb on - strandat 2220.742 kb on + strandat 2220.742 kb on + strandat 2220.837 kb on + strand, within CA264_09505at 2220.837 kb on + strand, within CA264_09505at 2220.849 kb on - strand, within CA264_09505at 2220.864 kb on - strand, within CA264_09505at 2220.869 kb on + strand, within CA264_09505at 2220.869 kb on + strand, within CA264_09505at 2220.870 kb on - strand, within CA264_09505at 2220.870 kb on - strand, within CA264_09505at 2220.986 kb on + strand, within CA264_09505at 2221.037 kb on - strand, within CA264_09505at 2221.041 kb on + strand, within CA264_09505at 2221.108 kb on - strandat 2221.222 kb on + strandat 2221.223 kb on - strandat 2221.227 kb on + strandat 2221.228 kb on - strandat 2221.277 kb on + strandat 2221.277 kb on + strandat 2221.277 kb on + strandat 2221.297 kb on + strandat 2221.310 kb on + strandat 2221.310 kb on + strandat 2221.408 kb on + strandat 2221.408 kb on + strandat 2221.410 kb on + strandat 2221.410 kb on + strandat 2221.411 kb on - strandat 2221.411 kb on - strandat 2221.411 kb on - strandat 2221.411 kb on - strandat 2221.437 kb on + strandat 2221.439 kb on + strandat 2221.443 kb on + strandat 2221.443 kb on + strandat 2221.443 kb on + strandat 2221.444 kb on - strandat 2221.462 kb on + strandat 2221.464 kb on + strandat 2221.464 kb on + strandat 2221.465 kb on - strandat 2221.465 kb on - strandat 2221.620 kb on - strand, within CA264_09510at 2221.707 kb on + strand, within CA264_09510at 2221.708 kb on - strand, within CA264_09510at 2221.828 kb on + strand, within CA264_09510at 2221.828 kb on + strand, within CA264_09510at 2221.829 kb on - strand, within CA264_09510at 2221.896 kb on + strand, within CA264_09510at 2221.896 kb on + strand, within CA264_09510at 2221.896 kb on + strand, within CA264_09510at 2221.919 kb on - strand, within CA264_09510at 2222.071 kb on - strand, within CA264_09510at 2222.091 kb on + strand, within CA264_09510

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM
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2,219,786 + CA264_09495 0.51 +0.1
2,219,818 + CA264_09495 0.53 -0.5
2,219,862 + CA264_09495 0.56 +0.2
2,219,862 + CA264_09495 0.56 +0.0
2,219,988 + CA264_09495 0.63 -2.0
2,219,988 + CA264_09495 0.63 -1.2
2,219,988 + CA264_09495 0.63 -0.4
2,220,041 - CA264_09495 0.66 -2.5
2,220,041 - CA264_09495 0.66 -2.7
2,220,041 - CA264_09495 0.66 -1.6
2,220,062 - CA264_09495 0.68 -2.7
2,220,171 + CA264_09495 0.74 +1.1
2,220,227 + CA264_09495 0.77 -2.3
2,220,251 + CA264_09495 0.79 -0.5
2,220,251 + CA264_09495 0.79 -1.7
2,220,252 - CA264_09495 0.79 -1.0
2,220,292 - CA264_09495 0.81 -1.6
2,220,294 + CA264_09495 0.81 -0.1
2,220,420 + CA264_09495 0.89 -1.0
2,220,421 - CA264_09495 0.89 -1.2
2,220,421 - CA264_09495 0.89 -2.1
2,220,525 - -1.2
2,220,527 - -1.3
2,220,539 + -1.0
2,220,539 + -2.1
2,220,539 + +0.1
2,220,539 + +0.1
2,220,539 + -0.6
2,220,598 + -0.4
2,220,599 - -0.6
2,220,599 - -2.2
2,220,599 - -1.4
2,220,599 - -1.6
2,220,600 + -0.8
2,220,600 + -0.2
2,220,601 - -2.2
2,220,601 - -3.2
2,220,639 - -3.3
2,220,674 + CA264_09500 0.47 -0.9
2,220,695 - CA264_09500 0.74 -1.1
2,220,715 - -1.1
2,220,727 + -3.1
2,220,729 + -1.3
2,220,730 - -3.3
2,220,742 + +1.0
2,220,742 + -0.9
2,220,837 + CA264_09505 0.23 -0.2
2,220,837 + CA264_09505 0.23 -2.3
2,220,849 - CA264_09505 0.26 -4.2
2,220,864 - CA264_09505 0.30 -1.2
2,220,869 + CA264_09505 0.32 -1.4
2,220,869 + CA264_09505 0.32 -2.4
2,220,870 - CA264_09505 0.32 -2.8
2,220,870 - CA264_09505 0.32 -2.9
2,220,986 + CA264_09505 0.65 -0.6
2,221,037 - CA264_09505 0.80 -2.1
2,221,041 + CA264_09505 0.81 -2.7
2,221,108 - -1.6
2,221,222 + -3.1
2,221,223 - -2.6
2,221,227 + -3.9
2,221,228 - -5.3
2,221,277 + -3.3
2,221,277 + -1.9
2,221,277 + -2.8
2,221,297 + -2.9
2,221,310 + -1.3
2,221,310 + -1.0
2,221,408 + -1.1
2,221,408 + +0.5
2,221,410 + +0.2
2,221,410 + +0.2
2,221,411 - -1.0
2,221,411 - -0.4
2,221,411 - -0.3
2,221,411 - -0.7
2,221,437 + +0.6
2,221,439 + -0.3
2,221,443 + -1.7
2,221,443 + +0.2
2,221,443 + -0.1
2,221,444 - -0.2
2,221,462 + +0.3
2,221,464 + +0.6
2,221,464 + +0.2
2,221,465 - -0.9
2,221,465 - -1.3
2,221,620 - CA264_09510 0.10 +0.1
2,221,707 + CA264_09510 0.17 +0.2
2,221,708 - CA264_09510 0.17 +1.4
2,221,828 + CA264_09510 0.26 +0.0
2,221,828 + CA264_09510 0.26 +0.0
2,221,829 - CA264_09510 0.26 -1.0
2,221,896 + CA264_09510 0.31 -0.3
2,221,896 + CA264_09510 0.31 -0.4
2,221,896 + CA264_09510 0.31 +1.0
2,221,919 - CA264_09510 0.32 +0.4
2,222,071 - CA264_09510 0.44 -0.1
2,222,091 + CA264_09510 0.45 -1.5

Or see this region's nucleotide sequence