Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09475

Experiment: m.b. copper (II) chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09470 and CA264_09475 are separated by 46 nucleotidesCA264_09475 and CA264_09480 are separated by 55 nucleotides CA264_09470: CA264_09470 - PAS domain-containing sensor histidine kinase, at 2,211,506 to 2,213,338 _09470 CA264_09475: CA264_09475 - histidine kinase, at 2,213,385 to 2,214,533 _09475 CA264_09480: CA264_09480 - hypothetical protein, at 2,214,589 to 2,215,977 _09480 Position (kb) 2213 2214 2215Strain fitness (log2 ratio) -2 -1 0 1 2at 2212.471 kb on + strand, within CA264_09470at 2212.472 kb on - strand, within CA264_09470at 2212.630 kb on + strand, within CA264_09470at 2212.630 kb on + strand, within CA264_09470at 2212.631 kb on - strand, within CA264_09470at 2212.631 kb on - strand, within CA264_09470at 2212.632 kb on + strand, within CA264_09470at 2212.633 kb on - strand, within CA264_09470at 2212.633 kb on - strand, within CA264_09470at 2212.634 kb on + strand, within CA264_09470at 2212.635 kb on - strand, within CA264_09470at 2212.635 kb on - strand, within CA264_09470at 2212.635 kb on - strand, within CA264_09470at 2212.715 kb on - strand, within CA264_09470at 2212.746 kb on - strand, within CA264_09470at 2212.808 kb on + strand, within CA264_09470at 2212.813 kb on + strand, within CA264_09470at 2212.835 kb on + strand, within CA264_09470at 2212.941 kb on + strand, within CA264_09470at 2212.942 kb on - strand, within CA264_09470at 2212.944 kb on + strand, within CA264_09470at 2212.944 kb on + strand, within CA264_09470at 2212.945 kb on - strand, within CA264_09470at 2212.958 kb on + strand, within CA264_09470at 2213.124 kb on - strand, within CA264_09470at 2213.139 kb on - strand, within CA264_09470at 2213.139 kb on - strand, within CA264_09470at 2213.164 kb on + strandat 2213.206 kb on - strandat 2213.227 kb on + strandat 2213.269 kb on - strandat 2213.269 kb on - strandat 2213.271 kb on - strandat 2213.286 kb on - strandat 2213.318 kb on - strandat 2213.344 kb on + strandat 2213.344 kb on + strandat 2213.345 kb on - strandat 2213.466 kb on - strandat 2213.517 kb on - strand, within CA264_09475at 2213.542 kb on - strand, within CA264_09475at 2213.616 kb on - strand, within CA264_09475at 2213.680 kb on + strand, within CA264_09475at 2213.997 kb on - strand, within CA264_09475at 2214.071 kb on - strand, within CA264_09475at 2214.087 kb on - strand, within CA264_09475at 2214.130 kb on - strand, within CA264_09475at 2214.186 kb on - strand, within CA264_09475at 2214.186 kb on - strand, within CA264_09475at 2214.186 kb on - strand, within CA264_09475at 2214.349 kb on + strand, within CA264_09475at 2214.366 kb on + strand, within CA264_09475at 2214.381 kb on + strand, within CA264_09475at 2214.409 kb on + strand, within CA264_09475at 2214.442 kb on + strandat 2214.442 kb on + strandat 2214.503 kb on + strandat 2214.503 kb on + strandat 2214.504 kb on - strandat 2214.546 kb on + strandat 2214.547 kb on - strandat 2214.547 kb on - strandat 2214.568 kb on - strandat 2214.573 kb on + strandat 2214.628 kb on - strandat 2214.628 kb on - strandat 2214.637 kb on + strandat 2214.637 kb on + strandat 2214.637 kb on + strandat 2214.803 kb on + strand, within CA264_09480at 2214.803 kb on + strand, within CA264_09480at 2214.917 kb on + strand, within CA264_09480at 2214.957 kb on + strand, within CA264_09480at 2214.968 kb on + strand, within CA264_09480at 2215.029 kb on - strand, within CA264_09480at 2215.065 kb on + strand, within CA264_09480at 2215.065 kb on + strand, within CA264_09480at 2215.067 kb on + strand, within CA264_09480at 2215.067 kb on + strand, within CA264_09480at 2215.067 kb on + strand, within CA264_09480at 2215.068 kb on - strand, within CA264_09480at 2215.068 kb on - strand, within CA264_09480at 2215.071 kb on + strand, within CA264_09480at 2215.071 kb on + strand, within CA264_09480at 2215.111 kb on + strand, within CA264_09480at 2215.111 kb on + strand, within CA264_09480at 2215.112 kb on - strand, within CA264_09480at 2215.174 kb on + strand, within CA264_09480at 2215.196 kb on + strand, within CA264_09480at 2215.197 kb on - strand, within CA264_09480at 2215.229 kb on + strand, within CA264_09480at 2215.373 kb on + strand, within CA264_09480at 2215.373 kb on + strand, within CA264_09480at 2215.373 kb on + strand, within CA264_09480at 2215.374 kb on - strand, within CA264_09480at 2215.374 kb on - strand, within CA264_09480at 2215.388 kb on + strand, within CA264_09480at 2215.388 kb on + strand, within CA264_09480at 2215.388 kb on + strand, within CA264_09480at 2215.389 kb on - strand, within CA264_09480at 2215.389 kb on - strand, within CA264_09480at 2215.389 kb on - strand, within CA264_09480at 2215.392 kb on + strand, within CA264_09480at 2215.436 kb on + strand, within CA264_09480

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM
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2,212,471 + CA264_09470 0.53 -0.2
2,212,472 - CA264_09470 0.53 -1.2
2,212,630 + CA264_09470 0.61 +0.7
2,212,630 + CA264_09470 0.61 +0.8
2,212,631 - CA264_09470 0.61 -0.0
2,212,631 - CA264_09470 0.61 +0.2
2,212,632 + CA264_09470 0.61 +1.8
2,212,633 - CA264_09470 0.61 +1.4
2,212,633 - CA264_09470 0.61 +1.1
2,212,634 + CA264_09470 0.62 -0.6
2,212,635 - CA264_09470 0.62 -2.0
2,212,635 - CA264_09470 0.62 -0.1
2,212,635 - CA264_09470 0.62 -0.4
2,212,715 - CA264_09470 0.66 -0.1
2,212,746 - CA264_09470 0.68 -0.6
2,212,808 + CA264_09470 0.71 -1.1
2,212,813 + CA264_09470 0.71 +0.6
2,212,835 + CA264_09470 0.73 -0.2
2,212,941 + CA264_09470 0.78 +1.8
2,212,942 - CA264_09470 0.78 -0.1
2,212,944 + CA264_09470 0.78 -1.5
2,212,944 + CA264_09470 0.78 -0.3
2,212,945 - CA264_09470 0.79 -1.1
2,212,958 + CA264_09470 0.79 +0.4
2,213,124 - CA264_09470 0.88 +0.1
2,213,139 - CA264_09470 0.89 -1.3
2,213,139 - CA264_09470 0.89 -1.2
2,213,164 + +0.5
2,213,206 - +0.5
2,213,227 + +0.8
2,213,269 - -2.1
2,213,269 - -0.8
2,213,271 - -0.7
2,213,286 - +0.2
2,213,318 - +0.4
2,213,344 + +0.1
2,213,344 + -0.1
2,213,345 - -0.7
2,213,466 - -0.6
2,213,517 - CA264_09475 0.11 -1.5
2,213,542 - CA264_09475 0.14 +1.1
2,213,616 - CA264_09475 0.20 -0.8
2,213,680 + CA264_09475 0.26 +0.1
2,213,997 - CA264_09475 0.53 -0.8
2,214,071 - CA264_09475 0.60 -0.2
2,214,087 - CA264_09475 0.61 -0.6
2,214,130 - CA264_09475 0.65 +0.3
2,214,186 - CA264_09475 0.70 -0.5
2,214,186 - CA264_09475 0.70 -1.2
2,214,186 - CA264_09475 0.70 -0.1
2,214,349 + CA264_09475 0.84 -0.5
2,214,366 + CA264_09475 0.85 +0.9
2,214,381 + CA264_09475 0.87 +0.1
2,214,409 + CA264_09475 0.89 -0.0
2,214,442 + -0.2
2,214,442 + -0.5
2,214,503 + -1.1
2,214,503 + -0.7
2,214,504 - +0.5
2,214,546 + -1.2
2,214,547 - -0.9
2,214,547 - -0.4
2,214,568 - +0.3
2,214,573 + -0.0
2,214,628 - -1.0
2,214,628 - -0.2
2,214,637 + -0.2
2,214,637 + -0.1
2,214,637 + -0.4
2,214,803 + CA264_09480 0.15 -1.5
2,214,803 + CA264_09480 0.15 -0.1
2,214,917 + CA264_09480 0.24 +0.8
2,214,957 + CA264_09480 0.26 -0.2
2,214,968 + CA264_09480 0.27 -0.6
2,215,029 - CA264_09480 0.32 +0.9
2,215,065 + CA264_09480 0.34 -0.0
2,215,065 + CA264_09480 0.34 -0.4
2,215,067 + CA264_09480 0.34 -0.2
2,215,067 + CA264_09480 0.34 +1.3
2,215,067 + CA264_09480 0.34 -0.2
2,215,068 - CA264_09480 0.34 -0.5
2,215,068 - CA264_09480 0.34 +0.3
2,215,071 + CA264_09480 0.35 +0.1
2,215,071 + CA264_09480 0.35 +0.4
2,215,111 + CA264_09480 0.38 -0.2
2,215,111 + CA264_09480 0.38 -1.0
2,215,112 - CA264_09480 0.38 -0.2
2,215,174 + CA264_09480 0.42 +0.5
2,215,196 + CA264_09480 0.44 +0.6
2,215,197 - CA264_09480 0.44 +0.0
2,215,229 + CA264_09480 0.46 -0.6
2,215,373 + CA264_09480 0.56 -0.4
2,215,373 + CA264_09480 0.56 -0.2
2,215,373 + CA264_09480 0.56 -0.2
2,215,374 - CA264_09480 0.57 -0.6
2,215,374 - CA264_09480 0.57 -0.1
2,215,388 + CA264_09480 0.58 -0.3
2,215,388 + CA264_09480 0.58 -1.0
2,215,388 + CA264_09480 0.58 +0.3
2,215,389 - CA264_09480 0.58 +0.8
2,215,389 - CA264_09480 0.58 +0.8
2,215,389 - CA264_09480 0.58 +0.0
2,215,392 + CA264_09480 0.58 +0.1
2,215,436 + CA264_09480 0.61 -0.6

Or see this region's nucleotide sequence