Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09310

Experiment: m.b. copper (II) chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09300 and CA264_09305 are separated by 303 nucleotidesCA264_09305 and CA264_09310 are separated by 89 nucleotidesCA264_09310 and CA264_09315 are separated by 173 nucleotides CA264_09300: CA264_09300 - EamA family transporter, at 2,175,345 to 2,176,259 _09300 CA264_09305: CA264_09305 - copper homeostasis protein, at 2,176,563 to 2,177,108 _09305 CA264_09310: CA264_09310 - tryptophan--tRNA ligase, at 2,177,198 to 2,178,172 _09310 CA264_09315: CA264_09315 - DUF5009 domain-containing protein, at 2,178,346 to 2,179,509 _09315 Position (kb) 2177 2178 2179Strain fitness (log2 ratio) -2 -1 0 1at 2176.202 kb on + strandat 2176.257 kb on + strandat 2176.264 kb on + strandat 2176.286 kb on - strandat 2176.332 kb on + strandat 2176.345 kb on - strandat 2176.345 kb on - strandat 2176.441 kb on + strandat 2176.442 kb on - strandat 2176.442 kb on - strandat 2176.461 kb on - strandat 2176.482 kb on + strandat 2176.483 kb on - strandat 2176.485 kb on + strandat 2176.486 kb on - strandat 2176.487 kb on + strandat 2176.583 kb on + strandat 2176.586 kb on - strandat 2176.591 kb on + strandat 2176.813 kb on + strand, within CA264_09305at 2176.814 kb on - strand, within CA264_09305at 2176.865 kb on + strand, within CA264_09305at 2176.866 kb on - strand, within CA264_09305at 2176.881 kb on + strand, within CA264_09305at 2176.881 kb on + strand, within CA264_09305at 2176.882 kb on - strand, within CA264_09305at 2176.882 kb on - strand, within CA264_09305at 2176.882 kb on - strand, within CA264_09305at 2176.882 kb on - strand, within CA264_09305at 2176.951 kb on + strand, within CA264_09305at 2176.952 kb on - strand, within CA264_09305at 2177.002 kb on + strand, within CA264_09305at 2177.026 kb on + strand, within CA264_09305at 2177.048 kb on - strand, within CA264_09305at 2177.072 kb on + strandat 2177.089 kb on - strandat 2177.104 kb on + strandat 2177.105 kb on - strandat 2177.105 kb on - strandat 2177.105 kb on - strandat 2178.170 kb on + strandat 2178.170 kb on + strandat 2178.194 kb on + strandat 2178.281 kb on - strandat 2178.285 kb on + strandat 2178.286 kb on - strandat 2178.286 kb on - strandat 2178.290 kb on + strandat 2178.290 kb on + strandat 2178.290 kb on + strandat 2178.295 kb on - strandat 2178.301 kb on + strandat 2178.301 kb on + strandat 2178.301 kb on + strandat 2178.338 kb on + strandat 2178.400 kb on + strandat 2178.446 kb on + strandat 2178.447 kb on - strandat 2178.450 kb on - strandat 2178.478 kb on - strand, within CA264_09315at 2178.517 kb on - strand, within CA264_09315at 2178.646 kb on - strand, within CA264_09315at 2178.729 kb on + strand, within CA264_09315at 2178.773 kb on - strand, within CA264_09315at 2178.800 kb on - strand, within CA264_09315at 2178.823 kb on - strand, within CA264_09315at 2178.955 kb on + strand, within CA264_09315at 2179.051 kb on - strand, within CA264_09315at 2179.142 kb on + strand, within CA264_09315at 2179.142 kb on + strand, within CA264_09315

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM
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2,176,202 + -0.3
2,176,257 + -0.6
2,176,264 + -0.5
2,176,286 - -0.1
2,176,332 + +0.5
2,176,345 - +0.8
2,176,345 - -1.2
2,176,441 + -1.4
2,176,442 - +0.2
2,176,442 - +0.0
2,176,461 - +0.6
2,176,482 + -0.2
2,176,483 - +0.3
2,176,485 + +0.6
2,176,486 - +0.5
2,176,487 + +0.6
2,176,583 + -0.5
2,176,586 - -0.2
2,176,591 + +0.0
2,176,813 + CA264_09305 0.46 -0.2
2,176,814 - CA264_09305 0.46 +0.2
2,176,865 + CA264_09305 0.55 +0.3
2,176,866 - CA264_09305 0.55 -1.1
2,176,881 + CA264_09305 0.58 +0.7
2,176,881 + CA264_09305 0.58 -1.4
2,176,882 - CA264_09305 0.58 -0.6
2,176,882 - CA264_09305 0.58 -0.7
2,176,882 - CA264_09305 0.58 -0.6
2,176,882 - CA264_09305 0.58 -0.1
2,176,951 + CA264_09305 0.71 -2.4
2,176,952 - CA264_09305 0.71 -0.4
2,177,002 + CA264_09305 0.80 +0.4
2,177,026 + CA264_09305 0.85 +1.2
2,177,048 - CA264_09305 0.89 -0.8
2,177,072 + -0.7
2,177,089 - -0.4
2,177,104 + +0.1
2,177,105 - +0.2
2,177,105 - -0.8
2,177,105 - -1.4
2,178,170 + -1.6
2,178,170 + -0.3
2,178,194 + -1.4
2,178,281 - -0.1
2,178,285 + +1.5
2,178,286 - -0.1
2,178,286 - -0.6
2,178,290 + -1.5
2,178,290 + -0.8
2,178,290 + +1.0
2,178,295 - -0.4
2,178,301 + -0.4
2,178,301 + -1.3
2,178,301 + -0.5
2,178,338 + -0.6
2,178,400 + -1.0
2,178,446 + +0.2
2,178,447 - -0.7
2,178,450 - -0.4
2,178,478 - CA264_09315 0.11 -0.5
2,178,517 - CA264_09315 0.15 +0.1
2,178,646 - CA264_09315 0.26 -0.3
2,178,729 + CA264_09315 0.33 -0.5
2,178,773 - CA264_09315 0.37 +1.1
2,178,800 - CA264_09315 0.39 -0.6
2,178,823 - CA264_09315 0.41 -0.5
2,178,955 + CA264_09315 0.52 -1.3
2,179,051 - CA264_09315 0.61 +0.0
2,179,142 + CA264_09315 0.68 +0.2
2,179,142 + CA264_09315 0.68 -0.3

Or see this region's nucleotide sequence