Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08740

Experiment: m.b. copper (II) chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08735 and CA264_08740 are separated by 436 nucleotidesCA264_08740 and CA264_08745 are separated by 255 nucleotides CA264_08735: CA264_08735 - hypothetical protein, at 2,034,285 to 2,034,710 _08735 CA264_08740: CA264_08740 - serine hydrolase, at 2,035,147 to 2,038,173 _08740 CA264_08745: CA264_08745 - glycoside hydrolase, at 2,038,429 to 2,039,955 _08745 Position (kb) 2035 2036 2037 2038 2039Strain fitness (log2 ratio) -2 -1 0 1 2at 2034.263 kb on + strandat 2034.263 kb on + strandat 2034.264 kb on - strandat 2034.265 kb on + strandat 2034.284 kb on - strandat 2034.284 kb on - strandat 2034.284 kb on - strandat 2034.286 kb on + strandat 2034.287 kb on - strandat 2034.358 kb on - strand, within CA264_08735at 2034.385 kb on + strand, within CA264_08735at 2034.421 kb on + strand, within CA264_08735at 2034.517 kb on + strand, within CA264_08735at 2034.517 kb on + strand, within CA264_08735at 2034.517 kb on + strand, within CA264_08735at 2034.527 kb on - strand, within CA264_08735at 2034.633 kb on - strand, within CA264_08735at 2034.640 kb on + strand, within CA264_08735at 2034.641 kb on - strand, within CA264_08735at 2034.641 kb on - strand, within CA264_08735at 2034.643 kb on - strand, within CA264_08735at 2034.643 kb on - strand, within CA264_08735at 2034.643 kb on - strand, within CA264_08735at 2034.643 kb on - strand, within CA264_08735at 2034.643 kb on - strand, within CA264_08735at 2034.652 kb on + strand, within CA264_08735at 2034.674 kb on + strandat 2034.675 kb on - strandat 2034.689 kb on - strandat 2034.725 kb on - strandat 2034.828 kb on + strandat 2034.840 kb on + strandat 2034.840 kb on + strandat 2034.904 kb on - strandat 2034.904 kb on - strandat 2034.915 kb on + strandat 2034.916 kb on - strandat 2034.921 kb on + strandat 2034.937 kb on - strandat 2034.980 kb on + strandat 2034.980 kb on + strandat 2035.069 kb on + strandat 2035.070 kb on - strandat 2035.070 kb on - strandat 2035.129 kb on - strandat 2035.184 kb on + strandat 2035.184 kb on + strandat 2035.196 kb on - strandat 2035.270 kb on + strandat 2035.270 kb on + strandat 2035.270 kb on + strandat 2035.270 kb on + strandat 2035.271 kb on - strandat 2035.271 kb on - strandat 2035.271 kb on - strandat 2035.271 kb on - strandat 2035.271 kb on - strandat 2035.275 kb on - strandat 2035.306 kb on - strandat 2035.415 kb on + strandat 2035.415 kb on + strandat 2035.420 kb on - strandat 2035.420 kb on - strandat 2035.581 kb on + strand, within CA264_08740at 2035.582 kb on - strand, within CA264_08740at 2035.582 kb on - strand, within CA264_08740at 2035.582 kb on - strand, within CA264_08740at 2035.615 kb on + strand, within CA264_08740at 2035.615 kb on + strand, within CA264_08740at 2035.657 kb on - strand, within CA264_08740at 2035.674 kb on - strand, within CA264_08740at 2035.677 kb on + strand, within CA264_08740at 2035.677 kb on + strand, within CA264_08740at 2035.677 kb on + strand, within CA264_08740at 2035.677 kb on + strand, within CA264_08740at 2035.677 kb on + strand, within CA264_08740at 2035.677 kb on + strand, within CA264_08740at 2035.678 kb on - strand, within CA264_08740at 2035.679 kb on + strand, within CA264_08740at 2035.680 kb on - strand, within CA264_08740at 2035.680 kb on - strand, within CA264_08740at 2035.680 kb on - strand, within CA264_08740at 2035.722 kb on + strand, within CA264_08740at 2035.933 kb on - strand, within CA264_08740at 2036.073 kb on - strand, within CA264_08740at 2036.146 kb on + strand, within CA264_08740at 2036.147 kb on - strand, within CA264_08740at 2036.154 kb on + strand, within CA264_08740at 2036.172 kb on - strand, within CA264_08740at 2036.208 kb on - strand, within CA264_08740at 2036.211 kb on + strand, within CA264_08740at 2036.212 kb on - strand, within CA264_08740at 2036.222 kb on + strand, within CA264_08740at 2036.367 kb on - strand, within CA264_08740at 2036.455 kb on + strand, within CA264_08740at 2036.497 kb on - strand, within CA264_08740at 2036.553 kb on + strand, within CA264_08740at 2036.683 kb on + strand, within CA264_08740at 2036.684 kb on - strand, within CA264_08740at 2036.693 kb on - strand, within CA264_08740at 2036.703 kb on + strand, within CA264_08740at 2036.704 kb on - strand, within CA264_08740at 2036.745 kb on + strand, within CA264_08740at 2036.776 kb on + strand, within CA264_08740at 2036.777 kb on - strand, within CA264_08740at 2036.851 kb on - strand, within CA264_08740at 2037.050 kb on - strand, within CA264_08740at 2037.050 kb on - strand, within CA264_08740at 2037.135 kb on + strand, within CA264_08740at 2037.235 kb on - strand, within CA264_08740at 2037.237 kb on - strand, within CA264_08740at 2037.518 kb on + strand, within CA264_08740at 2037.518 kb on + strand, within CA264_08740at 2037.682 kb on - strand, within CA264_08740at 2037.682 kb on - strand, within CA264_08740at 2037.773 kb on - strand, within CA264_08740at 2037.773 kb on - strand, within CA264_08740at 2037.875 kb on + strandat 2037.875 kb on + strandat 2037.994 kb on + strandat 2038.045 kb on + strandat 2038.115 kb on - strandat 2038.157 kb on - strandat 2038.191 kb on + strandat 2038.191 kb on + strandat 2038.203 kb on + strandat 2038.204 kb on - strandat 2038.220 kb on + strandat 2038.220 kb on + strandat 2038.225 kb on - strandat 2038.244 kb on - strandat 2038.255 kb on - strandat 2038.345 kb on + strandat 2038.349 kb on + strandat 2038.350 kb on - strandat 2038.359 kb on + strandat 2038.360 kb on - strandat 2038.416 kb on + strandat 2038.417 kb on - strandat 2038.870 kb on - strand, within CA264_08745at 2038.870 kb on - strand, within CA264_08745at 2038.870 kb on - strand, within CA264_08745at 2038.924 kb on - strand, within CA264_08745at 2038.951 kb on + strand, within CA264_08745at 2038.951 kb on + strand, within CA264_08745at 2038.952 kb on - strand, within CA264_08745at 2038.958 kb on + strand, within CA264_08745at 2039.018 kb on - strand, within CA264_08745at 2039.023 kb on + strand, within CA264_08745at 2039.023 kb on + strand, within CA264_08745at 2039.030 kb on - strand, within CA264_08745at 2039.035 kb on - strand, within CA264_08745at 2039.074 kb on + strand, within CA264_08745at 2039.074 kb on + strand, within CA264_08745at 2039.074 kb on + strand, within CA264_08745at 2039.076 kb on + strand, within CA264_08745at 2039.083 kb on - strand, within CA264_08745at 2039.152 kb on - strand, within CA264_08745at 2039.153 kb on + strand, within CA264_08745

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM
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2,034,263 + +1.3
2,034,263 + -0.4
2,034,264 - -1.4
2,034,265 + -0.0
2,034,284 - -2.5
2,034,284 - -0.8
2,034,284 - -2.3
2,034,286 + -0.1
2,034,287 - -2.1
2,034,358 - CA264_08735 0.17 -0.6
2,034,385 + CA264_08735 0.23 -1.1
2,034,421 + CA264_08735 0.32 +0.2
2,034,517 + CA264_08735 0.54 +0.7
2,034,517 + CA264_08735 0.54 -0.1
2,034,517 + CA264_08735 0.54 +0.1
2,034,527 - CA264_08735 0.57 -0.4
2,034,633 - CA264_08735 0.82 +0.4
2,034,640 + CA264_08735 0.83 +0.6
2,034,641 - CA264_08735 0.84 +0.9
2,034,641 - CA264_08735 0.84 -0.3
2,034,643 - CA264_08735 0.84 +0.1
2,034,643 - CA264_08735 0.84 +1.2
2,034,643 - CA264_08735 0.84 +1.0
2,034,643 - CA264_08735 0.84 +1.2
2,034,643 - CA264_08735 0.84 -0.2
2,034,652 + CA264_08735 0.86 +0.2
2,034,674 + +0.2
2,034,675 - +0.3
2,034,689 - -0.5
2,034,725 - +0.6
2,034,828 + -1.0
2,034,840 + -0.5
2,034,840 + +0.2
2,034,904 - +0.1
2,034,904 - -0.4
2,034,915 + -0.3
2,034,916 - -0.3
2,034,921 + -0.9
2,034,937 - +1.0
2,034,980 + +0.0
2,034,980 + -0.2
2,035,069 + -1.5
2,035,070 - -1.6
2,035,070 - +1.0
2,035,129 - -0.0
2,035,184 + -1.7
2,035,184 + +0.3
2,035,196 - -0.1
2,035,270 + -0.2
2,035,270 + -0.0
2,035,270 + +0.6
2,035,270 + -0.5
2,035,271 - -0.7
2,035,271 - -0.2
2,035,271 - +0.6
2,035,271 - -0.5
2,035,271 - -0.6
2,035,275 - -1.0
2,035,306 - -0.4
2,035,415 + +0.0
2,035,415 + -0.3
2,035,420 - -0.6
2,035,420 - -0.4
2,035,581 + CA264_08740 0.14 +0.4
2,035,582 - CA264_08740 0.14 +0.2
2,035,582 - CA264_08740 0.14 -0.3
2,035,582 - CA264_08740 0.14 +0.7
2,035,615 + CA264_08740 0.15 -0.1
2,035,615 + CA264_08740 0.15 +0.1
2,035,657 - CA264_08740 0.17 -0.4
2,035,674 - CA264_08740 0.17 -0.8
2,035,677 + CA264_08740 0.18 +0.3
2,035,677 + CA264_08740 0.18 -1.4
2,035,677 + CA264_08740 0.18 -0.1
2,035,677 + CA264_08740 0.18 -2.2
2,035,677 + CA264_08740 0.18 -0.1
2,035,677 + CA264_08740 0.18 -0.5
2,035,678 - CA264_08740 0.18 -0.7
2,035,679 + CA264_08740 0.18 +0.4
2,035,680 - CA264_08740 0.18 -0.6
2,035,680 - CA264_08740 0.18 -0.4
2,035,680 - CA264_08740 0.18 +0.2
2,035,722 + CA264_08740 0.19 -0.0
2,035,933 - CA264_08740 0.26 -0.8
2,036,073 - CA264_08740 0.31 +0.8
2,036,146 + CA264_08740 0.33 +0.1
2,036,147 - CA264_08740 0.33 -0.6
2,036,154 + CA264_08740 0.33 -0.2
2,036,172 - CA264_08740 0.34 -1.6
2,036,208 - CA264_08740 0.35 -0.5
2,036,211 + CA264_08740 0.35 +0.9
2,036,212 - CA264_08740 0.35 +0.3
2,036,222 + CA264_08740 0.36 +0.1
2,036,367 - CA264_08740 0.40 -0.4
2,036,455 + CA264_08740 0.43 -0.0
2,036,497 - CA264_08740 0.45 -0.5
2,036,553 + CA264_08740 0.46 +1.0
2,036,683 + CA264_08740 0.51 -0.1
2,036,684 - CA264_08740 0.51 -0.3
2,036,693 - CA264_08740 0.51 +0.2
2,036,703 + CA264_08740 0.51 +0.7
2,036,704 - CA264_08740 0.51 -0.0
2,036,745 + CA264_08740 0.53 +0.7
2,036,776 + CA264_08740 0.54 -0.4
2,036,777 - CA264_08740 0.54 +1.2
2,036,851 - CA264_08740 0.56 -0.3
2,037,050 - CA264_08740 0.63 +0.2
2,037,050 - CA264_08740 0.63 -0.6
2,037,135 + CA264_08740 0.66 +0.3
2,037,235 - CA264_08740 0.69 -1.3
2,037,237 - CA264_08740 0.69 -1.6
2,037,518 + CA264_08740 0.78 +1.5
2,037,518 + CA264_08740 0.78 +0.2
2,037,682 - CA264_08740 0.84 -0.9
2,037,682 - CA264_08740 0.84 +0.1
2,037,773 - CA264_08740 0.87 -0.5
2,037,773 - CA264_08740 0.87 -0.0
2,037,875 + -0.8
2,037,875 + +1.0
2,037,994 + -0.1
2,038,045 + +0.2
2,038,115 - -1.1
2,038,157 - -0.1
2,038,191 + -0.7
2,038,191 + -0.0
2,038,203 + -0.9
2,038,204 - +0.1
2,038,220 + +2.3
2,038,220 + -0.7
2,038,225 - -1.2
2,038,244 - -0.3
2,038,255 - +0.7
2,038,345 + -0.8
2,038,349 + -0.3
2,038,350 - -0.5
2,038,359 + -0.1
2,038,360 - +1.8
2,038,416 + -0.1
2,038,417 - +0.5
2,038,870 - CA264_08745 0.29 +0.4
2,038,870 - CA264_08745 0.29 -0.8
2,038,870 - CA264_08745 0.29 -0.2
2,038,924 - CA264_08745 0.32 -1.8
2,038,951 + CA264_08745 0.34 -1.9
2,038,951 + CA264_08745 0.34 -0.9
2,038,952 - CA264_08745 0.34 -0.2
2,038,958 + CA264_08745 0.35 +1.2
2,039,018 - CA264_08745 0.39 -0.1
2,039,023 + CA264_08745 0.39 -0.7
2,039,023 + CA264_08745 0.39 +0.9
2,039,030 - CA264_08745 0.39 -0.5
2,039,035 - CA264_08745 0.40 +1.0
2,039,074 + CA264_08745 0.42 -0.7
2,039,074 + CA264_08745 0.42 -1.0
2,039,074 + CA264_08745 0.42 -0.6
2,039,076 + CA264_08745 0.42 -0.7
2,039,083 - CA264_08745 0.43 -0.7
2,039,152 - CA264_08745 0.47 -0.3
2,039,153 + CA264_08745 0.47 -0.9

Or see this region's nucleotide sequence