Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_08350

Experiment: m.b. copper (II) chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_08340 and CA264_08345 are separated by 197 nucleotidesCA264_08345 and CA264_08350 are separated by 5 nucleotidesCA264_08350 and CA264_08355 are separated by 247 nucleotides CA264_08340: CA264_08340 - tRNA-Glu, at 1,926,940 to 1,927,014 _08340 CA264_08345: CA264_08345 - DNA-binding response regulator, at 1,927,212 to 1,927,919 _08345 CA264_08350: CA264_08350 - hypothetical protein, at 1,927,925 to 1,928,980 _08350 CA264_08355: CA264_08355 - hypothetical protein, at 1,929,228 to 1,930,541 _08355 Position (kb) 1927 1928 1929Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1927.057 kb on - strandat 1927.057 kb on - strandat 1927.059 kb on - strandat 1927.082 kb on + strandat 1927.122 kb on - strandat 1927.140 kb on + strandat 1927.141 kb on - strandat 1927.167 kb on + strandat 1927.194 kb on + strandat 1927.195 kb on - strandat 1927.195 kb on - strandat 1927.196 kb on + strandat 1927.196 kb on + strandat 1927.197 kb on - strandat 1927.214 kb on - strandat 1927.217 kb on + strandat 1927.218 kb on - strandat 1927.253 kb on + strandat 1927.254 kb on - strandat 1927.282 kb on - strandat 1927.302 kb on + strand, within CA264_08345at 1927.303 kb on - strand, within CA264_08345at 1927.310 kb on + strand, within CA264_08345at 1927.327 kb on - strand, within CA264_08345at 1927.328 kb on + strand, within CA264_08345at 1927.331 kb on + strand, within CA264_08345at 1927.332 kb on - strand, within CA264_08345at 1927.333 kb on + strand, within CA264_08345at 1927.334 kb on - strand, within CA264_08345at 1927.340 kb on + strand, within CA264_08345at 1927.340 kb on + strand, within CA264_08345at 1927.340 kb on + strand, within CA264_08345at 1927.341 kb on - strand, within CA264_08345at 1927.378 kb on - strand, within CA264_08345at 1927.382 kb on + strand, within CA264_08345at 1927.383 kb on - strand, within CA264_08345at 1927.434 kb on + strand, within CA264_08345at 1927.436 kb on + strand, within CA264_08345at 1927.436 kb on + strand, within CA264_08345at 1927.436 kb on + strand, within CA264_08345at 1927.437 kb on - strand, within CA264_08345at 1927.437 kb on - strand, within CA264_08345at 1927.438 kb on + strand, within CA264_08345at 1927.438 kb on + strand, within CA264_08345at 1927.438 kb on + strand, within CA264_08345at 1927.438 kb on + strand, within CA264_08345at 1927.438 kb on + strand, within CA264_08345at 1927.438 kb on + strand, within CA264_08345at 1927.439 kb on - strand, within CA264_08345at 1927.442 kb on + strand, within CA264_08345at 1927.442 kb on + strand, within CA264_08345at 1927.443 kb on - strand, within CA264_08345at 1927.506 kb on - strand, within CA264_08345at 1927.524 kb on - strand, within CA264_08345at 1927.567 kb on - strand, within CA264_08345at 1927.576 kb on + strand, within CA264_08345at 1927.589 kb on + strand, within CA264_08345at 1927.621 kb on - strand, within CA264_08345at 1927.630 kb on - strand, within CA264_08345at 1927.650 kb on - strand, within CA264_08345at 1927.657 kb on + strand, within CA264_08345at 1927.681 kb on + strand, within CA264_08345at 1927.695 kb on + strand, within CA264_08345at 1927.695 kb on + strand, within CA264_08345at 1927.696 kb on - strand, within CA264_08345at 1927.696 kb on - strand, within CA264_08345at 1927.704 kb on - strand, within CA264_08345at 1927.704 kb on - strand, within CA264_08345at 1927.704 kb on - strand, within CA264_08345at 1927.712 kb on + strand, within CA264_08345at 1927.712 kb on + strand, within CA264_08345at 1927.713 kb on - strand, within CA264_08345at 1927.713 kb on - strand, within CA264_08345at 1927.713 kb on - strand, within CA264_08345at 1927.716 kb on + strand, within CA264_08345at 1927.754 kb on + strand, within CA264_08345at 1927.754 kb on + strand, within CA264_08345at 1927.754 kb on + strand, within CA264_08345at 1927.755 kb on - strand, within CA264_08345at 1927.758 kb on + strand, within CA264_08345at 1927.758 kb on + strand, within CA264_08345at 1927.758 kb on + strand, within CA264_08345at 1927.759 kb on - strand, within CA264_08345at 1927.780 kb on - strand, within CA264_08345at 1927.788 kb on - strand, within CA264_08345at 1927.824 kb on - strand, within CA264_08345at 1927.864 kb on + strandat 1927.987 kb on + strandat 1927.988 kb on - strandat 1928.108 kb on - strand, within CA264_08350at 1928.110 kb on - strand, within CA264_08350at 1928.110 kb on - strand, within CA264_08350at 1928.132 kb on - strand, within CA264_08350at 1928.135 kb on + strand, within CA264_08350at 1928.135 kb on + strand, within CA264_08350at 1928.135 kb on + strand, within CA264_08350at 1928.135 kb on + strand, within CA264_08350at 1928.135 kb on + strand, within CA264_08350at 1928.136 kb on - strand, within CA264_08350at 1928.137 kb on + strand, within CA264_08350at 1928.138 kb on - strand, within CA264_08350at 1928.138 kb on - strand, within CA264_08350at 1928.138 kb on - strand, within CA264_08350at 1928.203 kb on + strand, within CA264_08350at 1928.204 kb on - strand, within CA264_08350at 1928.238 kb on - strand, within CA264_08350at 1928.250 kb on - strand, within CA264_08350at 1928.302 kb on + strand, within CA264_08350at 1928.310 kb on + strand, within CA264_08350at 1928.356 kb on - strand, within CA264_08350at 1928.365 kb on - strand, within CA264_08350at 1928.396 kb on - strand, within CA264_08350at 1928.452 kb on + strand, within CA264_08350at 1928.496 kb on - strand, within CA264_08350at 1928.571 kb on + strand, within CA264_08350at 1928.571 kb on + strand, within CA264_08350at 1928.591 kb on + strand, within CA264_08350at 1928.592 kb on - strand, within CA264_08350at 1928.593 kb on + strand, within CA264_08350at 1928.593 kb on + strand, within CA264_08350at 1928.593 kb on + strand, within CA264_08350at 1928.593 kb on + strand, within CA264_08350at 1928.594 kb on - strand, within CA264_08350at 1928.618 kb on + strand, within CA264_08350at 1928.671 kb on - strand, within CA264_08350at 1928.793 kb on + strand, within CA264_08350at 1928.793 kb on + strand, within CA264_08350at 1928.838 kb on + strand, within CA264_08350at 1928.838 kb on + strand, within CA264_08350at 1928.838 kb on + strand, within CA264_08350at 1928.840 kb on + strand, within CA264_08350at 1928.841 kb on - strand, within CA264_08350at 1928.842 kb on + strand, within CA264_08350at 1928.842 kb on + strand, within CA264_08350at 1928.843 kb on - strand, within CA264_08350at 1928.884 kb on + strandat 1928.884 kb on + strandat 1928.885 kb on - strandat 1928.885 kb on - strandat 1928.893 kb on + strandat 1928.894 kb on - strandat 1928.894 kb on - strandat 1928.897 kb on + strandat 1928.921 kb on + strandat 1928.921 kb on + strandat 1928.940 kb on - strandat 1928.966 kb on + strandat 1928.966 kb on + strandat 1928.967 kb on - strandat 1929.031 kb on + strandat 1929.032 kb on - strandat 1929.032 kb on - strandat 1929.041 kb on + strandat 1929.046 kb on - strandat 1929.046 kb on - strandat 1929.046 kb on - strandat 1929.072 kb on + strandat 1929.072 kb on + strandat 1929.073 kb on - strandat 1929.094 kb on + strandat 1929.109 kb on + strandat 1929.110 kb on - strandat 1929.110 kb on - strandat 1929.110 kb on - strandat 1929.110 kb on - strandat 1929.123 kb on + strandat 1929.127 kb on + strandat 1929.174 kb on - strandat 1929.204 kb on + strandat 1929.220 kb on + strandat 1929.239 kb on + strandat 1929.247 kb on - strandat 1929.263 kb on - strandat 1929.282 kb on + strandat 1929.283 kb on - strandat 1929.306 kb on - strandat 1929.359 kb on - strandat 1929.359 kb on - strandat 1929.369 kb on + strand, within CA264_08355at 1929.400 kb on + strand, within CA264_08355at 1929.495 kb on - strand, within CA264_08355at 1929.495 kb on - strand, within CA264_08355at 1929.495 kb on - strand, within CA264_08355at 1929.528 kb on + strand, within CA264_08355at 1929.565 kb on + strand, within CA264_08355at 1929.566 kb on - strand, within CA264_08355at 1929.622 kb on - strand, within CA264_08355at 1929.658 kb on + strand, within CA264_08355at 1929.658 kb on + strand, within CA264_08355at 1929.658 kb on + strand, within CA264_08355at 1929.658 kb on + strand, within CA264_08355at 1929.658 kb on + strand, within CA264_08355at 1929.659 kb on - strand, within CA264_08355at 1929.659 kb on - strand, within CA264_08355at 1929.659 kb on - strand, within CA264_08355at 1929.659 kb on - strand, within CA264_08355at 1929.664 kb on - strand, within CA264_08355at 1929.685 kb on + strand, within CA264_08355at 1929.685 kb on + strand, within CA264_08355at 1929.686 kb on - strand, within CA264_08355at 1929.692 kb on + strand, within CA264_08355at 1929.695 kb on + strand, within CA264_08355at 1929.716 kb on - strand, within CA264_08355at 1929.737 kb on - strand, within CA264_08355at 1929.743 kb on + strand, within CA264_08355at 1929.744 kb on - strand, within CA264_08355at 1929.744 kb on - strand, within CA264_08355at 1929.744 kb on - strand, within CA264_08355at 1929.766 kb on + strand, within CA264_08355at 1929.799 kb on + strand, within CA264_08355at 1929.800 kb on - strand, within CA264_08355at 1929.886 kb on - strand, within CA264_08355at 1929.914 kb on - strand, within CA264_08355at 1929.924 kb on - strand, within CA264_08355at 1929.932 kb on - strand, within CA264_08355at 1929.936 kb on - strand, within CA264_08355at 1929.936 kb on - strand, within CA264_08355at 1929.936 kb on - strand, within CA264_08355at 1929.936 kb on - strand, within CA264_08355at 1929.977 kb on + strand, within CA264_08355at 1929.978 kb on - strand, within CA264_08355

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM
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1,927,057 - -0.8
1,927,057 - +0.0
1,927,059 - -0.3
1,927,082 + -0.2
1,927,122 - -0.1
1,927,140 + +1.7
1,927,141 - +0.7
1,927,167 + -0.4
1,927,194 + +0.4
1,927,195 - -2.6
1,927,195 - +0.7
1,927,196 + +0.1
1,927,196 + -2.3
1,927,197 - +0.1
1,927,214 - +0.4
1,927,217 + +0.7
1,927,218 - +0.2
1,927,253 + +0.2
1,927,254 - -0.0
1,927,282 - -0.4
1,927,302 + CA264_08345 0.13 -0.0
1,927,303 - CA264_08345 0.13 -0.3
1,927,310 + CA264_08345 0.14 -0.0
1,927,327 - CA264_08345 0.16 +0.7
1,927,328 + CA264_08345 0.16 +0.8
1,927,331 + CA264_08345 0.17 +0.8
1,927,332 - CA264_08345 0.17 -0.3
1,927,333 + CA264_08345 0.17 +0.4
1,927,334 - CA264_08345 0.17 -1.4
1,927,340 + CA264_08345 0.18 +0.4
1,927,340 + CA264_08345 0.18 +0.1
1,927,340 + CA264_08345 0.18 -0.1
1,927,341 - CA264_08345 0.18 +0.0
1,927,378 - CA264_08345 0.23 +0.4
1,927,382 + CA264_08345 0.24 +0.4
1,927,383 - CA264_08345 0.24 -0.4
1,927,434 + CA264_08345 0.31 +0.6
1,927,436 + CA264_08345 0.32 -0.9
1,927,436 + CA264_08345 0.32 +0.1
1,927,436 + CA264_08345 0.32 -1.1
1,927,437 - CA264_08345 0.32 -0.5
1,927,437 - CA264_08345 0.32 -0.2
1,927,438 + CA264_08345 0.32 -1.2
1,927,438 + CA264_08345 0.32 -0.4
1,927,438 + CA264_08345 0.32 -0.2
1,927,438 + CA264_08345 0.32 -0.7
1,927,438 + CA264_08345 0.32 +0.1
1,927,438 + CA264_08345 0.32 -0.7
1,927,439 - CA264_08345 0.32 -0.7
1,927,442 + CA264_08345 0.32 +0.1
1,927,442 + CA264_08345 0.32 +0.3
1,927,443 - CA264_08345 0.33 -0.9
1,927,506 - CA264_08345 0.42 +0.4
1,927,524 - CA264_08345 0.44 +0.2
1,927,567 - CA264_08345 0.50 -1.6
1,927,576 + CA264_08345 0.51 +0.1
1,927,589 + CA264_08345 0.53 +0.3
1,927,621 - CA264_08345 0.58 -0.2
1,927,630 - CA264_08345 0.59 -0.4
1,927,650 - CA264_08345 0.62 +1.1
1,927,657 + CA264_08345 0.63 -0.8
1,927,681 + CA264_08345 0.66 -0.3
1,927,695 + CA264_08345 0.68 -0.4
1,927,695 + CA264_08345 0.68 -0.3
1,927,696 - CA264_08345 0.68 +0.1
1,927,696 - CA264_08345 0.68 -0.4
1,927,704 - CA264_08345 0.69 -0.3
1,927,704 - CA264_08345 0.69 +0.1
1,927,704 - CA264_08345 0.69 +0.3
1,927,712 + CA264_08345 0.71 +1.7
1,927,712 + CA264_08345 0.71 +0.4
1,927,713 - CA264_08345 0.71 -0.2
1,927,713 - CA264_08345 0.71 +0.2
1,927,713 - CA264_08345 0.71 -0.0
1,927,716 + CA264_08345 0.71 -0.5
1,927,754 + CA264_08345 0.77 -0.4
1,927,754 + CA264_08345 0.77 -0.7
1,927,754 + CA264_08345 0.77 +0.7
1,927,755 - CA264_08345 0.77 -2.0
1,927,758 + CA264_08345 0.77 -2.0
1,927,758 + CA264_08345 0.77 -0.1
1,927,758 + CA264_08345 0.77 +0.0
1,927,759 - CA264_08345 0.77 -1.0
1,927,780 - CA264_08345 0.80 +0.8
1,927,788 - CA264_08345 0.81 +0.0
1,927,824 - CA264_08345 0.86 -0.1
1,927,864 + -0.7
1,927,987 + -1.4
1,927,988 - -0.5
1,928,108 - CA264_08350 0.17 -2.0
1,928,110 - CA264_08350 0.18 -2.8
1,928,110 - CA264_08350 0.18 -2.0
1,928,132 - CA264_08350 0.20 -1.4
1,928,135 + CA264_08350 0.20 -1.8
1,928,135 + CA264_08350 0.20 -0.7
1,928,135 + CA264_08350 0.20 -1.5
1,928,135 + CA264_08350 0.20 -0.4
1,928,135 + CA264_08350 0.20 -1.9
1,928,136 - CA264_08350 0.20 -2.6
1,928,137 + CA264_08350 0.20 -1.0
1,928,138 - CA264_08350 0.20 -1.7
1,928,138 - CA264_08350 0.20 -2.8
1,928,138 - CA264_08350 0.20 -1.0
1,928,203 + CA264_08350 0.26 -0.8
1,928,204 - CA264_08350 0.26 -0.5
1,928,238 - CA264_08350 0.30 -2.2
1,928,250 - CA264_08350 0.31 -1.5
1,928,302 + CA264_08350 0.36 -0.7
1,928,310 + CA264_08350 0.36 -2.0
1,928,356 - CA264_08350 0.41 -1.8
1,928,365 - CA264_08350 0.42 -0.9
1,928,396 - CA264_08350 0.45 -2.6
1,928,452 + CA264_08350 0.50 -0.2
1,928,496 - CA264_08350 0.54 -1.9
1,928,571 + CA264_08350 0.61 -1.1
1,928,571 + CA264_08350 0.61 -1.5
1,928,591 + CA264_08350 0.63 +2.3
1,928,592 - CA264_08350 0.63 -0.9
1,928,593 + CA264_08350 0.63 -0.9
1,928,593 + CA264_08350 0.63 -3.1
1,928,593 + CA264_08350 0.63 -0.3
1,928,593 + CA264_08350 0.63 -1.8
1,928,594 - CA264_08350 0.63 -0.6
1,928,618 + CA264_08350 0.66 +0.3
1,928,671 - CA264_08350 0.71 -2.6
1,928,793 + CA264_08350 0.82 -1.5
1,928,793 + CA264_08350 0.82 -1.2
1,928,838 + CA264_08350 0.86 -0.8
1,928,838 + CA264_08350 0.86 -0.8
1,928,838 + CA264_08350 0.86 -0.9
1,928,840 + CA264_08350 0.87 -0.9
1,928,841 - CA264_08350 0.87 -1.8
1,928,842 + CA264_08350 0.87 -1.9
1,928,842 + CA264_08350 0.87 +0.5
1,928,843 - CA264_08350 0.87 -1.4
1,928,884 + -1.2
1,928,884 + -1.0
1,928,885 - -0.9
1,928,885 - -2.3
1,928,893 + -1.2
1,928,894 - -1.4
1,928,894 - -0.7
1,928,897 + -2.3
1,928,921 + -1.3
1,928,921 + -3.1
1,928,940 - -1.1
1,928,966 + +0.1
1,928,966 + -0.9
1,928,967 - -2.6
1,929,031 + -0.9
1,929,032 - +0.1
1,929,032 - +0.5
1,929,041 + -1.5
1,929,046 - -0.7
1,929,046 - -0.7
1,929,046 - -1.6
1,929,072 + -1.4
1,929,072 + -1.3
1,929,073 - -0.8
1,929,094 + -0.3
1,929,109 + -2.0
1,929,110 - +0.3
1,929,110 - -0.5
1,929,110 - -0.6
1,929,110 - -0.3
1,929,123 + -1.1
1,929,127 + -1.6
1,929,174 - +0.5
1,929,204 + +0.2
1,929,220 + +0.1
1,929,239 + +1.4
1,929,247 - -0.4
1,929,263 - -0.7
1,929,282 + -0.4
1,929,283 - -0.1
1,929,306 - -0.6
1,929,359 - +0.3
1,929,359 - -1.1
1,929,369 + CA264_08355 0.11 +1.2
1,929,400 + CA264_08355 0.13 -0.7
1,929,495 - CA264_08355 0.20 -0.4
1,929,495 - CA264_08355 0.20 -0.5
1,929,495 - CA264_08355 0.20 -2.3
1,929,528 + CA264_08355 0.23 +0.5
1,929,565 + CA264_08355 0.26 -0.9
1,929,566 - CA264_08355 0.26 +0.7
1,929,622 - CA264_08355 0.30 -0.1
1,929,658 + CA264_08355 0.33 -0.0
1,929,658 + CA264_08355 0.33 -0.3
1,929,658 + CA264_08355 0.33 -0.7
1,929,658 + CA264_08355 0.33 -1.4
1,929,658 + CA264_08355 0.33 -1.6
1,929,659 - CA264_08355 0.33 +0.8
1,929,659 - CA264_08355 0.33 +0.2
1,929,659 - CA264_08355 0.33 -1.7
1,929,659 - CA264_08355 0.33 +0.3
1,929,664 - CA264_08355 0.33 -0.1
1,929,685 + CA264_08355 0.35 -0.0
1,929,685 + CA264_08355 0.35 -0.5
1,929,686 - CA264_08355 0.35 -1.4
1,929,692 + CA264_08355 0.35 +0.3
1,929,695 + CA264_08355 0.36 -0.4
1,929,716 - CA264_08355 0.37 +0.2
1,929,737 - CA264_08355 0.39 -0.6
1,929,743 + CA264_08355 0.39 -0.0
1,929,744 - CA264_08355 0.39 +0.3
1,929,744 - CA264_08355 0.39 -0.2
1,929,744 - CA264_08355 0.39 +0.1
1,929,766 + CA264_08355 0.41 -0.8
1,929,799 + CA264_08355 0.43 -0.4
1,929,800 - CA264_08355 0.44 +0.7
1,929,886 - CA264_08355 0.50 +0.6
1,929,914 - CA264_08355 0.52 -0.5
1,929,924 - CA264_08355 0.53 +0.1
1,929,932 - CA264_08355 0.54 -0.1
1,929,936 - CA264_08355 0.54 -0.1
1,929,936 - CA264_08355 0.54 -0.1
1,929,936 - CA264_08355 0.54 +0.7
1,929,936 - CA264_08355 0.54 +0.1
1,929,977 + CA264_08355 0.57 +1.9
1,929,978 - CA264_08355 0.57 -0.9

Or see this region's nucleotide sequence