Experiment: m.b. copper (II) chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_07500 and CA264_07505 are separated by 342 nucleotides CA264_07505 and CA264_07510 are separated by 57 nucleotides CA264_07510 and CA264_07515 are separated by 234 nucleotides CA264_07515 and CA264_07520 are separated by 82 nucleotides
CA264_07500: CA264_07500 - T9SS C-terminal target domain-containing protein, at 1,735,831 to 1,738,479
_07500
CA264_07505: CA264_07505 - GNAT family N-acetyltransferase, at 1,738,822 to 1,739,307
_07505
CA264_07510: CA264_07510 - DUF5103 domain-containing protein, at 1,739,365 to 1,740,675
_07510
CA264_07515: CA264_07515 - hypothetical protein, at 1,740,910 to 1,741,359
_07515
CA264_07520: CA264_07520 - DNA-binding response regulator, at 1,741,442 to 1,742,179
_07520
Position (kb)
1739
1740
1741 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1738.378 kb on - strand at 1738.398 kb on - strand at 1738.398 kb on - strand at 1738.420 kb on + strand at 1738.421 kb on - strand at 1738.438 kb on - strand at 1738.467 kb on - strand at 1738.469 kb on + strand at 1738.469 kb on + strand at 1738.470 kb on - strand at 1738.470 kb on - strand at 1738.488 kb on - strand at 1738.532 kb on + strand at 1738.542 kb on + strand at 1738.542 kb on + strand at 1738.545 kb on + strand at 1738.548 kb on + strand at 1738.552 kb on + strand at 1738.638 kb on + strand at 1738.640 kb on + strand at 1738.641 kb on - strand at 1738.644 kb on + strand at 1738.645 kb on - strand at 1738.645 kb on - strand at 1738.676 kb on + strand at 1738.677 kb on - strand at 1738.733 kb on - strand at 1738.734 kb on + strand at 1738.734 kb on + strand at 1738.734 kb on + strand at 1738.810 kb on + strand at 1738.817 kb on - strand at 1738.824 kb on - strand at 1738.825 kb on + strand at 1738.825 kb on + strand at 1738.826 kb on - strand at 1738.830 kb on + strand at 1738.881 kb on + strand, within CA264_07505 at 1738.881 kb on + strand, within CA264_07505 at 1738.882 kb on - strand, within CA264_07505 at 1738.902 kb on - strand, within CA264_07505 at 1738.968 kb on + strand, within CA264_07505 at 1738.969 kb on - strand, within CA264_07505 at 1738.969 kb on - strand, within CA264_07505 at 1739.068 kb on + strand, within CA264_07505 at 1739.073 kb on + strand, within CA264_07505 at 1739.083 kb on + strand, within CA264_07505 at 1739.083 kb on + strand, within CA264_07505 at 1739.084 kb on - strand, within CA264_07505 at 1739.084 kb on - strand, within CA264_07505 at 1739.084 kb on - strand, within CA264_07505 at 1739.084 kb on - strand, within CA264_07505 at 1739.084 kb on - strand, within CA264_07505 at 1739.085 kb on + strand, within CA264_07505 at 1739.085 kb on + strand, within CA264_07505 at 1739.086 kb on - strand, within CA264_07505 at 1739.086 kb on - strand, within CA264_07505 at 1739.100 kb on + strand, within CA264_07505 at 1739.135 kb on - strand, within CA264_07505 at 1739.186 kb on + strand, within CA264_07505 at 1739.186 kb on + strand, within CA264_07505 at 1739.187 kb on - strand, within CA264_07505 at 1739.265 kb on + strand at 1739.293 kb on + strand at 1739.294 kb on - strand at 1739.361 kb on - strand at 1739.435 kb on + strand at 1739.436 kb on - strand at 1739.436 kb on - strand at 1739.450 kb on + strand at 1739.451 kb on - strand at 1739.486 kb on + strand at 1739.487 kb on - strand at 1739.491 kb on - strand at 1739.523 kb on + strand, within CA264_07510 at 1739.523 kb on + strand, within CA264_07510 at 1739.525 kb on + strand, within CA264_07510 at 1739.525 kb on + strand, within CA264_07510 at 1739.525 kb on + strand, within CA264_07510 at 1739.525 kb on + strand, within CA264_07510 at 1739.526 kb on - strand, within CA264_07510 at 1739.526 kb on - strand, within CA264_07510 at 1739.526 kb on - strand, within CA264_07510 at 1739.526 kb on - strand, within CA264_07510 at 1739.528 kb on + strand, within CA264_07510 at 1739.528 kb on + strand, within CA264_07510 at 1739.528 kb on + strand, within CA264_07510 at 1739.529 kb on - strand, within CA264_07510 at 1739.531 kb on + strand, within CA264_07510 at 1739.531 kb on + strand, within CA264_07510 at 1739.531 kb on + strand, within CA264_07510 at 1739.531 kb on + strand, within CA264_07510 at 1739.532 kb on - strand, within CA264_07510 at 1739.535 kb on + strand, within CA264_07510 at 1739.535 kb on + strand, within CA264_07510 at 1739.536 kb on - strand, within CA264_07510 at 1739.536 kb on - strand, within CA264_07510 at 1739.536 kb on - strand, within CA264_07510 at 1739.536 kb on - strand, within CA264_07510 at 1739.538 kb on - strand, within CA264_07510 at 1739.538 kb on - strand, within CA264_07510 at 1739.572 kb on + strand, within CA264_07510 at 1739.611 kb on + strand, within CA264_07510 at 1739.629 kb on - strand, within CA264_07510 at 1739.645 kb on + strand, within CA264_07510 at 1739.646 kb on - strand, within CA264_07510 at 1739.678 kb on - strand, within CA264_07510 at 1739.699 kb on + strand, within CA264_07510 at 1739.700 kb on - strand, within CA264_07510 at 1739.745 kb on + strand, within CA264_07510 at 1739.844 kb on + strand, within CA264_07510 at 1739.844 kb on + strand, within CA264_07510 at 1739.845 kb on - strand, within CA264_07510 at 1739.866 kb on - strand, within CA264_07510 at 1739.907 kb on - strand, within CA264_07510 at 1739.914 kb on - strand, within CA264_07510 at 1739.968 kb on + strand, within CA264_07510 at 1739.968 kb on + strand, within CA264_07510 at 1739.968 kb on + strand, within CA264_07510 at 1739.968 kb on + strand, within CA264_07510 at 1739.968 kb on + strand, within CA264_07510 at 1739.968 kb on + strand, within CA264_07510 at 1739.968 kb on + strand, within CA264_07510 at 1739.968 kb on + strand, within CA264_07510 at 1739.969 kb on - strand, within CA264_07510 at 1739.969 kb on - strand, within CA264_07510 at 1739.969 kb on - strand, within CA264_07510 at 1739.969 kb on - strand, within CA264_07510 at 1739.969 kb on - strand, within CA264_07510 at 1739.969 kb on - strand, within CA264_07510 at 1739.969 kb on - strand, within CA264_07510 at 1739.969 kb on - strand, within CA264_07510 at 1739.970 kb on + strand, within CA264_07510 at 1739.970 kb on + strand, within CA264_07510 at 1739.972 kb on + strand, within CA264_07510 at 1739.972 kb on + strand, within CA264_07510 at 1739.972 kb on + strand, within CA264_07510 at 1739.973 kb on - strand, within CA264_07510 at 1739.973 kb on - strand, within CA264_07510 at 1739.977 kb on - strand, within CA264_07510 at 1739.990 kb on + strand, within CA264_07510 at 1740.052 kb on + strand, within CA264_07510 at 1740.063 kb on - strand, within CA264_07510 at 1740.081 kb on + strand, within CA264_07510 at 1740.241 kb on + strand, within CA264_07510 at 1740.264 kb on - strand, within CA264_07510 at 1740.272 kb on + strand, within CA264_07510 at 1740.273 kb on - strand, within CA264_07510 at 1740.333 kb on - strand, within CA264_07510 at 1740.440 kb on - strand, within CA264_07510 at 1740.512 kb on + strand, within CA264_07510 at 1740.513 kb on - strand, within CA264_07510 at 1740.549 kb on - strand at 1740.568 kb on + strand at 1740.651 kb on - strand at 1740.651 kb on - strand at 1740.651 kb on - strand at 1740.654 kb on + strand at 1740.654 kb on + strand at 1740.654 kb on + strand at 1740.654 kb on + strand at 1740.655 kb on - strand at 1740.655 kb on - strand at 1740.655 kb on - strand at 1740.655 kb on - strand at 1740.656 kb on + strand at 1740.656 kb on + strand at 1740.656 kb on + strand at 1740.656 kb on + strand at 1740.656 kb on + strand at 1740.657 kb on - strand at 1740.657 kb on - strand at 1740.657 kb on - strand at 1740.657 kb on - strand at 1740.670 kb on + strand at 1740.680 kb on + strand at 1740.681 kb on - strand at 1740.730 kb on + strand at 1740.730 kb on + strand at 1740.731 kb on - strand at 1740.733 kb on - strand at 1740.733 kb on - strand at 1740.736 kb on + strand at 1740.795 kb on + strand at 1741.054 kb on + strand, within CA264_07515 at 1741.161 kb on - strand, within CA264_07515 at 1741.208 kb on + strand, within CA264_07515 at 1741.208 kb on + strand, within CA264_07515 at 1741.209 kb on - strand, within CA264_07515 at 1741.237 kb on - strand, within CA264_07515 at 1741.331 kb on - strand at 1741.335 kb on - strand at 1741.335 kb on - strand at 1741.351 kb on + strand at 1741.360 kb on - strand at 1741.365 kb on - strand at 1741.365 kb on - strand at 1741.393 kb on - strand at 1741.394 kb on + strand at 1741.394 kb on + strand at 1741.395 kb on - strand at 1741.398 kb on + strand at 1741.400 kb on + strand at 1741.401 kb on - strand at 1741.444 kb on - strand at 1741.529 kb on + strand, within CA264_07520 at 1741.530 kb on - strand, within CA264_07520 at 1741.530 kb on - strand, within CA264_07520 at 1741.567 kb on + strand, within CA264_07520
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM remove 1,738,378 - -0.1 1,738,398 - +1.0 1,738,398 - -1.3 1,738,420 + +0.7 1,738,421 - -0.6 1,738,438 - +0.7 1,738,467 - +0.4 1,738,469 + -0.2 1,738,469 + -0.6 1,738,470 - +0.7 1,738,470 - -1.4 1,738,488 - -0.1 1,738,532 + +0.8 1,738,542 + +0.0 1,738,542 + +0.3 1,738,545 + +1.4 1,738,548 + -0.3 1,738,552 + -1.9 1,738,638 + +0.9 1,738,640 + -0.8 1,738,641 - -0.2 1,738,644 + +0.1 1,738,645 - +0.3 1,738,645 - -0.9 1,738,676 + -0.3 1,738,677 - -1.4 1,738,733 - -0.7 1,738,734 + -0.9 1,738,734 + -2.9 1,738,734 + -0.2 1,738,810 + +0.2 1,738,817 - -0.3 1,738,824 - -0.7 1,738,825 + -0.3 1,738,825 + +0.7 1,738,826 - -0.2 1,738,830 + -0.7 1,738,881 + CA264_07505 0.12 -0.0 1,738,881 + CA264_07505 0.12 +1.0 1,738,882 - CA264_07505 0.12 -0.3 1,738,902 - CA264_07505 0.16 +0.4 1,738,968 + CA264_07505 0.30 +0.2 1,738,969 - CA264_07505 0.30 -2.7 1,738,969 - CA264_07505 0.30 +1.3 1,739,068 + CA264_07505 0.51 -0.5 1,739,073 + CA264_07505 0.52 -1.7 1,739,083 + CA264_07505 0.54 -0.0 1,739,083 + CA264_07505 0.54 -0.5 1,739,084 - CA264_07505 0.54 +0.3 1,739,084 - CA264_07505 0.54 -1.2 1,739,084 - CA264_07505 0.54 -0.1 1,739,084 - CA264_07505 0.54 +1.1 1,739,084 - CA264_07505 0.54 -0.2 1,739,085 + CA264_07505 0.54 -1.7 1,739,085 + CA264_07505 0.54 -0.4 1,739,086 - CA264_07505 0.54 -0.6 1,739,086 - CA264_07505 0.54 +0.5 1,739,100 + CA264_07505 0.57 +0.2 1,739,135 - CA264_07505 0.64 -0.5 1,739,186 + CA264_07505 0.75 -0.1 1,739,186 + CA264_07505 0.75 +0.4 1,739,187 - CA264_07505 0.75 -1.1 1,739,265 + -0.7 1,739,293 + -2.0 1,739,294 - -0.2 1,739,361 - -0.3 1,739,435 + -0.3 1,739,436 - +0.1 1,739,436 - -0.6 1,739,450 + -0.3 1,739,451 - -1.7 1,739,486 + -0.7 1,739,487 - -2.0 1,739,491 - -0.9 1,739,523 + CA264_07510 0.12 +0.4 1,739,523 + CA264_07510 0.12 -0.3 1,739,525 + CA264_07510 0.12 +0.9 1,739,525 + CA264_07510 0.12 +0.3 1,739,525 + CA264_07510 0.12 -0.2 1,739,525 + CA264_07510 0.12 -0.2 1,739,526 - CA264_07510 0.12 -1.6 1,739,526 - CA264_07510 0.12 -0.8 1,739,526 - CA264_07510 0.12 -0.4 1,739,526 - CA264_07510 0.12 -2.3 1,739,528 + CA264_07510 0.12 -0.3 1,739,528 + CA264_07510 0.12 -0.4 1,739,528 + CA264_07510 0.12 +0.7 1,739,529 - CA264_07510 0.13 -0.6 1,739,531 + CA264_07510 0.13 +0.1 1,739,531 + CA264_07510 0.13 -0.6 1,739,531 + CA264_07510 0.13 +1.6 1,739,531 + CA264_07510 0.13 -0.3 1,739,532 - CA264_07510 0.13 -0.4 1,739,535 + CA264_07510 0.13 +0.4 1,739,535 + CA264_07510 0.13 +0.1 1,739,536 - CA264_07510 0.13 -0.6 1,739,536 - CA264_07510 0.13 -0.1 1,739,536 - CA264_07510 0.13 -1.7 1,739,536 - CA264_07510 0.13 -1.1 1,739,538 - CA264_07510 0.13 -0.4 1,739,538 - CA264_07510 0.13 -1.2 1,739,572 + CA264_07510 0.16 -0.9 1,739,611 + CA264_07510 0.19 -0.2 1,739,629 - CA264_07510 0.20 -0.3 1,739,645 + CA264_07510 0.21 +0.1 1,739,646 - CA264_07510 0.21 +1.1 1,739,678 - CA264_07510 0.24 -0.1 1,739,699 + CA264_07510 0.25 +0.6 1,739,700 - CA264_07510 0.26 -1.4 1,739,745 + CA264_07510 0.29 -0.8 1,739,844 + CA264_07510 0.37 -0.9 1,739,844 + CA264_07510 0.37 -0.3 1,739,845 - CA264_07510 0.37 +0.2 1,739,866 - CA264_07510 0.38 -2.4 1,739,907 - CA264_07510 0.41 -0.3 1,739,914 - CA264_07510 0.42 -2.2 1,739,968 + CA264_07510 0.46 -0.3 1,739,968 + CA264_07510 0.46 -1.5 1,739,968 + CA264_07510 0.46 -1.1 1,739,968 + CA264_07510 0.46 +0.3 1,739,968 + CA264_07510 0.46 +0.1 1,739,968 + CA264_07510 0.46 -0.5 1,739,968 + CA264_07510 0.46 -0.1 1,739,968 + CA264_07510 0.46 +0.4 1,739,969 - CA264_07510 0.46 -0.3 1,739,969 - CA264_07510 0.46 -1.6 1,739,969 - CA264_07510 0.46 +1.2 1,739,969 - CA264_07510 0.46 -1.4 1,739,969 - CA264_07510 0.46 -2.1 1,739,969 - CA264_07510 0.46 -0.8 1,739,969 - CA264_07510 0.46 -1.1 1,739,969 - CA264_07510 0.46 -0.3 1,739,970 + CA264_07510 0.46 -0.8 1,739,970 + CA264_07510 0.46 -0.1 1,739,972 + CA264_07510 0.46 +0.6 1,739,972 + CA264_07510 0.46 +0.4 1,739,972 + CA264_07510 0.46 +0.3 1,739,973 - CA264_07510 0.46 -0.0 1,739,973 - CA264_07510 0.46 -0.6 1,739,977 - CA264_07510 0.47 +0.8 1,739,990 + CA264_07510 0.48 -0.7 1,740,052 + CA264_07510 0.52 -1.0 1,740,063 - CA264_07510 0.53 -1.6 1,740,081 + CA264_07510 0.55 -0.4 1,740,241 + CA264_07510 0.67 -0.6 1,740,264 - CA264_07510 0.69 -1.5 1,740,272 + CA264_07510 0.69 -0.4 1,740,273 - CA264_07510 0.69 +2.3 1,740,333 - CA264_07510 0.74 -0.9 1,740,440 - CA264_07510 0.82 -0.7 1,740,512 + CA264_07510 0.87 -0.7 1,740,513 - CA264_07510 0.88 -1.4 1,740,549 - -0.6 1,740,568 + -0.2 1,740,651 - -0.2 1,740,651 - -0.8 1,740,651 - -0.8 1,740,654 + +1.5 1,740,654 + +0.5 1,740,654 + -1.3 1,740,654 + -0.7 1,740,655 - -1.0 1,740,655 - -0.8 1,740,655 - -0.4 1,740,655 - +0.8 1,740,656 + -0.5 1,740,656 + -0.7 1,740,656 + +0.2 1,740,656 + -4.1 1,740,656 + +0.9 1,740,657 - -1.5 1,740,657 - -0.8 1,740,657 - -0.6 1,740,657 - -0.8 1,740,670 + +0.2 1,740,680 + +0.3 1,740,681 - -0.7 1,740,730 + +1.0 1,740,730 + -0.1 1,740,731 - +0.6 1,740,733 - +0.5 1,740,733 - -0.5 1,740,736 + +1.1 1,740,795 + +0.6 1,741,054 + CA264_07515 0.32 +0.2 1,741,161 - CA264_07515 0.56 -0.8 1,741,208 + CA264_07515 0.66 +1.1 1,741,208 + CA264_07515 0.66 +0.2 1,741,209 - CA264_07515 0.66 -0.2 1,741,237 - CA264_07515 0.73 -1.1 1,741,331 - +1.8 1,741,335 - -0.3 1,741,335 - -0.9 1,741,351 + -0.3 1,741,360 - +0.7 1,741,365 - -0.3 1,741,365 - +0.0 1,741,393 - -1.0 1,741,394 + +0.3 1,741,394 + -0.3 1,741,395 - +0.3 1,741,398 + -0.0 1,741,400 + +0.4 1,741,401 - +0.3 1,741,444 - +1.3 1,741,529 + CA264_07520 0.12 +0.1 1,741,530 - CA264_07520 0.12 -0.4 1,741,530 - CA264_07520 0.12 -0.3 1,741,567 + CA264_07520 0.17 +0.6
Or see this region's nucleotide sequence