Experiment: m.b. copper (II) chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_07040 and CA264_07045 are separated by 243 nucleotides CA264_07045 and CA264_07050 are separated by 759 nucleotides
CA264_07040: CA264_07040 - 8-amino-7-oxononanoate synthase, at 1,622,821 to 1,624,062
_07040
CA264_07045: CA264_07045 - TetR family transcriptional regulator, at 1,624,306 to 1,624,896
_07045
CA264_07050: CA264_07050 - serine acetyltransferase, at 1,625,656 to 1,626,192
_07050
Position (kb)
1624
1625 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1623.327 kb on + strand, within CA264_07040 at 1623.422 kb on - strand, within CA264_07040 at 1623.422 kb on - strand, within CA264_07040 at 1623.422 kb on - strand, within CA264_07040 at 1623.422 kb on - strand, within CA264_07040 at 1623.492 kb on + strand, within CA264_07040 at 1623.571 kb on - strand, within CA264_07040 at 1623.584 kb on + strand, within CA264_07040 at 1623.584 kb on + strand, within CA264_07040 at 1623.628 kb on - strand, within CA264_07040 at 1623.657 kb on + strand, within CA264_07040 at 1623.658 kb on - strand, within CA264_07040 at 1623.659 kb on + strand, within CA264_07040 at 1623.660 kb on - strand, within CA264_07040 at 1623.687 kb on + strand, within CA264_07040 at 1623.847 kb on - strand, within CA264_07040 at 1623.865 kb on - strand, within CA264_07040 at 1623.877 kb on - strand, within CA264_07040 at 1623.877 kb on - strand, within CA264_07040 at 1623.877 kb on - strand, within CA264_07040 at 1623.877 kb on - strand, within CA264_07040 at 1624.207 kb on + strand at 1624.210 kb on + strand at 1624.249 kb on + strand at 1624.257 kb on + strand at 1624.258 kb on - strand at 1624.330 kb on + strand at 1624.332 kb on + strand at 1624.457 kb on + strand, within CA264_07045 at 1624.458 kb on - strand, within CA264_07045 at 1624.458 kb on - strand, within CA264_07045 at 1624.548 kb on + strand, within CA264_07045 at 1624.549 kb on - strand, within CA264_07045 at 1624.549 kb on - strand, within CA264_07045 at 1624.552 kb on - strand, within CA264_07045 at 1624.632 kb on + strand, within CA264_07045 at 1624.747 kb on - strand, within CA264_07045 at 1624.752 kb on + strand, within CA264_07045 at 1624.752 kb on + strand, within CA264_07045 at 1624.752 kb on + strand, within CA264_07045 at 1624.752 kb on + strand, within CA264_07045 at 1624.754 kb on + strand, within CA264_07045 at 1624.754 kb on + strand, within CA264_07045 at 1624.755 kb on - strand, within CA264_07045 at 1624.800 kb on + strand, within CA264_07045 at 1624.829 kb on + strand, within CA264_07045 at 1625.007 kb on + strand at 1625.008 kb on - strand at 1625.008 kb on - strand at 1625.075 kb on + strand at 1625.088 kb on + strand at 1625.088 kb on + strand at 1625.089 kb on - strand at 1625.089 kb on - strand at 1625.089 kb on - strand at 1625.155 kb on + strand at 1625.167 kb on + strand at 1625.205 kb on + strand at 1625.206 kb on - strand at 1625.206 kb on - strand at 1625.208 kb on - strand at 1625.218 kb on - strand at 1625.221 kb on + strand at 1625.222 kb on - strand at 1625.268 kb on + strand at 1625.268 kb on + strand at 1625.269 kb on - strand at 1625.269 kb on - strand at 1625.269 kb on - strand at 1625.361 kb on - strand at 1625.391 kb on - strand at 1625.437 kb on - strand at 1625.464 kb on + strand at 1625.487 kb on + strand at 1625.574 kb on + strand at 1625.574 kb on + strand at 1625.574 kb on + strand at 1625.644 kb on + strand at 1625.653 kb on + strand at 1625.654 kb on - strand at 1625.662 kb on + strand at 1625.663 kb on - strand at 1625.700 kb on + strand at 1625.817 kb on + strand, within CA264_07050 at 1625.818 kb on - strand at 1625.823 kb on + strand, within CA264_07050 at 1625.823 kb on + strand, within CA264_07050 at 1625.824 kb on - strand, within CA264_07050 at 1625.824 kb on - strand, within CA264_07050 at 1625.850 kb on - strand, within CA264_07050 at 1625.850 kb on - strand, within CA264_07050 at 1625.850 kb on - strand, within CA264_07050 at 1625.867 kb on + strand, within CA264_07050
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM remove 1,623,327 + CA264_07040 0.41 +0.3 1,623,422 - CA264_07040 0.48 -1.6 1,623,422 - CA264_07040 0.48 -0.1 1,623,422 - CA264_07040 0.48 +0.4 1,623,422 - CA264_07040 0.48 -1.8 1,623,492 + CA264_07040 0.54 -0.0 1,623,571 - CA264_07040 0.60 -0.2 1,623,584 + CA264_07040 0.61 -0.8 1,623,584 + CA264_07040 0.61 -0.2 1,623,628 - CA264_07040 0.65 -1.5 1,623,657 + CA264_07040 0.67 +0.2 1,623,658 - CA264_07040 0.67 -3.8 1,623,659 + CA264_07040 0.67 +0.5 1,623,660 - CA264_07040 0.68 -0.8 1,623,687 + CA264_07040 0.70 -0.6 1,623,847 - CA264_07040 0.83 -2.2 1,623,865 - CA264_07040 0.84 +0.3 1,623,877 - CA264_07040 0.85 -1.5 1,623,877 - CA264_07040 0.85 -0.8 1,623,877 - CA264_07040 0.85 -1.1 1,623,877 - CA264_07040 0.85 -2.1 1,624,207 + +0.7 1,624,210 + -0.0 1,624,249 + +0.1 1,624,257 + +0.1 1,624,258 - -1.1 1,624,330 + +1.2 1,624,332 + -0.6 1,624,457 + CA264_07045 0.26 +0.2 1,624,458 - CA264_07045 0.26 -1.0 1,624,458 - CA264_07045 0.26 -1.2 1,624,548 + CA264_07045 0.41 +0.8 1,624,549 - CA264_07045 0.41 -1.9 1,624,549 - CA264_07045 0.41 +0.7 1,624,552 - CA264_07045 0.42 -0.1 1,624,632 + CA264_07045 0.55 -0.7 1,624,747 - CA264_07045 0.75 -1.1 1,624,752 + CA264_07045 0.75 -0.2 1,624,752 + CA264_07045 0.75 +0.9 1,624,752 + CA264_07045 0.75 -0.5 1,624,752 + CA264_07045 0.75 +0.4 1,624,754 + CA264_07045 0.76 +0.6 1,624,754 + CA264_07045 0.76 +0.5 1,624,755 - CA264_07045 0.76 -0.3 1,624,800 + CA264_07045 0.84 +0.6 1,624,829 + CA264_07045 0.88 +0.3 1,625,007 + +1.2 1,625,008 - -0.9 1,625,008 - -0.7 1,625,075 + +0.8 1,625,088 + +0.0 1,625,088 + -0.2 1,625,089 - -0.6 1,625,089 - -0.5 1,625,089 - -0.2 1,625,155 + -0.6 1,625,167 + -0.2 1,625,205 + +1.1 1,625,206 - -1.1 1,625,206 - -1.1 1,625,208 - -0.4 1,625,218 - +1.2 1,625,221 + -2.3 1,625,222 - -0.6 1,625,268 + +0.2 1,625,268 + +0.0 1,625,269 - -0.6 1,625,269 - -2.5 1,625,269 - +0.4 1,625,361 - -0.4 1,625,391 - -0.9 1,625,437 - -1.4 1,625,464 + +1.5 1,625,487 + -1.2 1,625,574 + +0.1 1,625,574 + -0.3 1,625,574 + -0.3 1,625,644 + +0.1 1,625,653 + -0.6 1,625,654 - -0.4 1,625,662 + +0.5 1,625,663 - -0.8 1,625,700 + -0.6 1,625,817 + CA264_07050 0.30 -0.8 1,625,818 - +0.2 1,625,823 + CA264_07050 0.31 +1.8 1,625,823 + CA264_07050 0.31 -1.7 1,625,824 - CA264_07050 0.31 -0.7 1,625,824 - CA264_07050 0.31 -1.2 1,625,850 - CA264_07050 0.36 -0.9 1,625,850 - CA264_07050 0.36 +0.1 1,625,850 - CA264_07050 0.36 +0.7 1,625,867 + CA264_07050 0.39 -0.3
Or see this region's nucleotide sequence