Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06105

Experiment: m.b. copper (II) chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06095 and CA264_06100 are separated by 112 nucleotidesCA264_06100 and CA264_06105 are separated by 210 nucleotidesCA264_06105 and CA264_06110 are separated by 180 nucleotides CA264_06095: CA264_06095 - hypothetical protein, at 1,425,155 to 1,425,460 _06095 CA264_06100: CA264_06100 - riboflavin synthase, at 1,425,573 to 1,426,157 _06100 CA264_06105: CA264_06105 - protein-L-isoaspartate O-methyltransferase, at 1,426,368 to 1,427,027 _06105 CA264_06110: CA264_06110 - hypothetical protein, at 1,427,208 to 1,428,164 _06110 Position (kb) 1426 1427 1428Strain fitness (log2 ratio) -3 -2 -1 0 1at 1425.377 kb on + strand, within CA264_06095at 1425.463 kb on + strandat 1425.485 kb on + strandat 1425.486 kb on - strandat 1425.494 kb on + strandat 1425.583 kb on - strandat 1425.595 kb on - strandat 1426.157 kb on + strandat 1426.157 kb on + strandat 1426.329 kb on - strandat 1426.329 kb on - strandat 1426.329 kb on - strandat 1426.329 kb on - strandat 1426.334 kb on + strandat 1426.352 kb on + strandat 1426.352 kb on + strandat 1426.353 kb on - strandat 1426.356 kb on + strandat 1426.357 kb on - strandat 1426.357 kb on - strandat 1426.360 kb on + strandat 1426.617 kb on - strand, within CA264_06105at 1426.674 kb on - strand, within CA264_06105at 1426.698 kb on + strand, within CA264_06105at 1426.881 kb on - strand, within CA264_06105at 1427.025 kb on + strandat 1427.026 kb on - strandat 1427.100 kb on + strandat 1427.120 kb on - strandat 1427.122 kb on - strandat 1427.122 kb on - strandat 1427.167 kb on - strandat 1427.285 kb on + strandat 1427.309 kb on + strand, within CA264_06110at 1427.400 kb on + strand, within CA264_06110at 1427.400 kb on + strand, within CA264_06110at 1427.400 kb on + strand, within CA264_06110at 1427.401 kb on - strand, within CA264_06110at 1427.401 kb on - strand, within CA264_06110at 1427.404 kb on + strand, within CA264_06110at 1427.500 kb on - strand, within CA264_06110at 1427.610 kb on + strand, within CA264_06110at 1427.611 kb on - strand, within CA264_06110at 1427.665 kb on + strand, within CA264_06110at 1427.804 kb on + strand, within CA264_06110at 1427.805 kb on - strand, within CA264_06110at 1427.834 kb on + strand, within CA264_06110at 1427.834 kb on + strand, within CA264_06110at 1428.000 kb on - strand, within CA264_06110

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM
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1,425,377 + CA264_06095 0.73 +1.3
1,425,463 + -0.6
1,425,485 + +0.5
1,425,486 - -0.2
1,425,494 + +0.4
1,425,583 - +0.7
1,425,595 - -0.8
1,426,157 + -0.8
1,426,157 + -0.1
1,426,329 - -0.3
1,426,329 - +0.1
1,426,329 - -1.2
1,426,329 - -0.7
1,426,334 + +0.3
1,426,352 + -2.0
1,426,352 + -0.1
1,426,353 - -0.0
1,426,356 + -1.3
1,426,357 - -0.1
1,426,357 - -0.6
1,426,360 + +0.1
1,426,617 - CA264_06105 0.38 -1.5
1,426,674 - CA264_06105 0.46 -2.0
1,426,698 + CA264_06105 0.50 -3.1
1,426,881 - CA264_06105 0.78 -1.0
1,427,025 + +1.7
1,427,026 - +0.1
1,427,100 + +1.1
1,427,120 - +0.3
1,427,122 - -0.6
1,427,122 - +0.3
1,427,167 - -0.4
1,427,285 + +1.1
1,427,309 + CA264_06110 0.11 -0.3
1,427,400 + CA264_06110 0.20 -1.2
1,427,400 + CA264_06110 0.20 -0.9
1,427,400 + CA264_06110 0.20 +0.3
1,427,401 - CA264_06110 0.20 -2.1
1,427,401 - CA264_06110 0.20 -0.4
1,427,404 + CA264_06110 0.20 +0.3
1,427,500 - CA264_06110 0.31 -0.3
1,427,610 + CA264_06110 0.42 -0.7
1,427,611 - CA264_06110 0.42 -0.2
1,427,665 + CA264_06110 0.48 +1.5
1,427,804 + CA264_06110 0.62 -0.1
1,427,805 - CA264_06110 0.62 +0.3
1,427,834 + CA264_06110 0.65 -0.3
1,427,834 + CA264_06110 0.65 -0.8
1,428,000 - CA264_06110 0.83 +0.2

Or see this region's nucleotide sequence