Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05535

Experiment: m.b. copper (II) chloride 0.16 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_05530 and CA264_05535 are separated by 327 nucleotidesCA264_05535 and CA264_05540 are separated by 73 nucleotides CA264_05530: CA264_05530 - phosphoenolpyruvate carboxylase, at 1,284,041 to 1,286,626 _05530 CA264_05535: CA264_05535 - hypothetical protein, at 1,286,954 to 1,288,087 _05535 CA264_05540: CA264_05540 - DNA gyrase subunit A, at 1,288,161 to 1,290,725 _05540 Position (kb) 1286 1287 1288 1289Strain fitness (log2 ratio) -1 0 1 2 3at 1286.024 kb on + strand, within CA264_05530at 1286.024 kb on + strand, within CA264_05530at 1286.026 kb on + strand, within CA264_05530at 1286.026 kb on + strand, within CA264_05530at 1286.045 kb on + strand, within CA264_05530at 1286.045 kb on + strand, within CA264_05530at 1286.097 kb on + strand, within CA264_05530at 1286.127 kb on - strand, within CA264_05530at 1286.127 kb on - strand, within CA264_05530at 1286.238 kb on - strand, within CA264_05530at 1286.238 kb on - strand, within CA264_05530at 1286.238 kb on - strand, within CA264_05530at 1286.251 kb on - strand, within CA264_05530at 1286.252 kb on + strand, within CA264_05530at 1286.252 kb on + strand, within CA264_05530at 1286.252 kb on + strand, within CA264_05530at 1286.258 kb on - strand, within CA264_05530at 1286.273 kb on - strand, within CA264_05530at 1286.339 kb on + strand, within CA264_05530at 1286.339 kb on + strand, within CA264_05530at 1286.360 kb on - strand, within CA264_05530at 1286.372 kb on + strandat 1286.372 kb on + strandat 1286.372 kb on + strandat 1286.564 kb on + strandat 1286.575 kb on - strandat 1286.575 kb on - strandat 1286.575 kb on - strandat 1286.686 kb on - strandat 1286.739 kb on - strandat 1286.791 kb on + strandat 1286.795 kb on + strandat 1286.921 kb on + strandat 1286.995 kb on + strandat 1286.995 kb on + strandat 1287.096 kb on + strand, within CA264_05535at 1287.096 kb on + strand, within CA264_05535at 1287.145 kb on + strand, within CA264_05535at 1287.145 kb on + strand, within CA264_05535at 1287.146 kb on - strand, within CA264_05535at 1287.146 kb on - strand, within CA264_05535at 1287.146 kb on - strand, within CA264_05535at 1287.146 kb on - strand, within CA264_05535at 1287.146 kb on - strand, within CA264_05535at 1287.146 kb on - strand, within CA264_05535at 1287.150 kb on + strand, within CA264_05535at 1287.150 kb on + strand, within CA264_05535at 1287.150 kb on + strand, within CA264_05535at 1287.150 kb on + strand, within CA264_05535at 1287.151 kb on - strand, within CA264_05535at 1287.151 kb on - strand, within CA264_05535at 1287.195 kb on + strand, within CA264_05535at 1287.214 kb on + strand, within CA264_05535at 1287.216 kb on + strand, within CA264_05535at 1287.217 kb on - strand, within CA264_05535at 1287.262 kb on - strand, within CA264_05535at 1287.405 kb on + strand, within CA264_05535at 1287.405 kb on + strand, within CA264_05535at 1287.405 kb on + strand, within CA264_05535at 1287.516 kb on - strand, within CA264_05535at 1287.528 kb on + strand, within CA264_05535at 1287.528 kb on + strand, within CA264_05535at 1287.571 kb on - strand, within CA264_05535at 1287.592 kb on - strand, within CA264_05535at 1287.803 kb on + strand, within CA264_05535at 1287.814 kb on + strand, within CA264_05535at 1287.814 kb on + strand, within CA264_05535at 1287.814 kb on + strand, within CA264_05535at 1287.815 kb on - strand, within CA264_05535at 1287.835 kb on + strand, within CA264_05535at 1287.836 kb on - strand, within CA264_05535at 1287.896 kb on - strand, within CA264_05535at 1287.940 kb on + strand, within CA264_05535at 1288.129 kb on - strandat 1288.129 kb on - strandat 1288.129 kb on - strandat 1288.294 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM
remove
1,286,024 + CA264_05530 0.77 -0.2
1,286,024 + CA264_05530 0.77 -1.0
1,286,026 + CA264_05530 0.77 -0.2
1,286,026 + CA264_05530 0.77 +1.7
1,286,045 + CA264_05530 0.77 -1.2
1,286,045 + CA264_05530 0.77 -0.2
1,286,097 + CA264_05530 0.80 -0.7
1,286,127 - CA264_05530 0.81 -0.5
1,286,127 - CA264_05530 0.81 +0.6
1,286,238 - CA264_05530 0.85 +0.3
1,286,238 - CA264_05530 0.85 -0.1
1,286,238 - CA264_05530 0.85 -0.7
1,286,251 - CA264_05530 0.85 +1.3
1,286,252 + CA264_05530 0.85 +0.1
1,286,252 + CA264_05530 0.85 +1.0
1,286,252 + CA264_05530 0.85 +0.2
1,286,258 - CA264_05530 0.86 +0.5
1,286,273 - CA264_05530 0.86 +0.3
1,286,339 + CA264_05530 0.89 +0.8
1,286,339 + CA264_05530 0.89 +0.0
1,286,360 - CA264_05530 0.90 +0.5
1,286,372 + -0.7
1,286,372 + -0.4
1,286,372 + -1.7
1,286,564 + -0.4
1,286,575 - -0.7
1,286,575 - +1.2
1,286,575 - -0.6
1,286,686 - +0.3
1,286,739 - -0.8
1,286,791 + +0.8
1,286,795 + +0.7
1,286,921 + +1.6
1,286,995 + +1.8
1,286,995 + +2.2
1,287,096 + CA264_05535 0.13 +3.1
1,287,096 + CA264_05535 0.13 +2.1
1,287,145 + CA264_05535 0.17 +2.0
1,287,145 + CA264_05535 0.17 +2.7
1,287,146 - CA264_05535 0.17 +1.3
1,287,146 - CA264_05535 0.17 +2.3
1,287,146 - CA264_05535 0.17 +1.6
1,287,146 - CA264_05535 0.17 +0.8
1,287,146 - CA264_05535 0.17 +1.2
1,287,146 - CA264_05535 0.17 +1.3
1,287,150 + CA264_05535 0.17 +1.8
1,287,150 + CA264_05535 0.17 +2.0
1,287,150 + CA264_05535 0.17 +1.6
1,287,150 + CA264_05535 0.17 +1.8
1,287,151 - CA264_05535 0.17 +0.7
1,287,151 - CA264_05535 0.17 -0.9
1,287,195 + CA264_05535 0.21 +2.2
1,287,214 + CA264_05535 0.23 +2.0
1,287,216 + CA264_05535 0.23 +1.8
1,287,217 - CA264_05535 0.23 +1.5
1,287,262 - CA264_05535 0.27 +1.0
1,287,405 + CA264_05535 0.40 +2.1
1,287,405 + CA264_05535 0.40 +2.1
1,287,405 + CA264_05535 0.40 +2.9
1,287,516 - CA264_05535 0.50 +1.3
1,287,528 + CA264_05535 0.51 +1.8
1,287,528 + CA264_05535 0.51 +1.9
1,287,571 - CA264_05535 0.54 +1.2
1,287,592 - CA264_05535 0.56 +2.9
1,287,803 + CA264_05535 0.75 +2.9
1,287,814 + CA264_05535 0.76 +2.0
1,287,814 + CA264_05535 0.76 +1.7
1,287,814 + CA264_05535 0.76 +1.4
1,287,815 - CA264_05535 0.76 +2.1
1,287,835 + CA264_05535 0.78 +2.3
1,287,836 - CA264_05535 0.78 +1.4
1,287,896 - CA264_05535 0.83 +1.5
1,287,940 + CA264_05535 0.87 +2.5
1,288,129 - +0.4
1,288,129 - -0.8
1,288,129 - -0.2
1,288,294 - -1.4

Or see this region's nucleotide sequence