Experiment: m.b. copper (II) chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_05120 and CA264_05125 are separated by 322 nucleotides CA264_05125 and CA264_05130 are separated by 26 nucleotides
CA264_05120: CA264_05120 - alpha/beta hydrolase, at 1,183,670 to 1,184,536
_05120
CA264_05125: CA264_05125 - hypothetical protein, at 1,184,859 to 1,186,397
_05125
CA264_05130: CA264_05130 - alanine racemase, at 1,186,424 to 1,187,575
_05130
Position (kb)
1184
1185
1186
1187 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1183.890 kb on + strand, within CA264_05120 at 1183.915 kb on + strand, within CA264_05120 at 1183.916 kb on - strand, within CA264_05120 at 1184.010 kb on + strand, within CA264_05120 at 1184.029 kb on + strand, within CA264_05120 at 1184.029 kb on + strand, within CA264_05120 at 1184.029 kb on + strand, within CA264_05120 at 1184.030 kb on - strand, within CA264_05120 at 1184.030 kb on - strand, within CA264_05120 at 1184.030 kb on - strand, within CA264_05120 at 1184.030 kb on - strand, within CA264_05120 at 1184.030 kb on - strand, within CA264_05120 at 1184.030 kb on - strand, within CA264_05120 at 1184.084 kb on - strand, within CA264_05120 at 1184.142 kb on - strand, within CA264_05120 at 1184.144 kb on + strand, within CA264_05120 at 1184.144 kb on + strand, within CA264_05120 at 1184.146 kb on + strand, within CA264_05120 at 1184.216 kb on + strand, within CA264_05120 at 1184.216 kb on + strand, within CA264_05120 at 1184.217 kb on - strand, within CA264_05120 at 1184.228 kb on + strand, within CA264_05120 at 1184.230 kb on + strand, within CA264_05120 at 1184.305 kb on + strand, within CA264_05120 at 1184.423 kb on + strand, within CA264_05120 at 1184.423 kb on + strand, within CA264_05120 at 1184.441 kb on - strand, within CA264_05120 at 1184.450 kb on + strand at 1184.451 kb on - strand at 1184.454 kb on + strand at 1184.561 kb on - strand at 1184.628 kb on + strand at 1184.633 kb on - strand at 1184.633 kb on - strand at 1184.636 kb on + strand at 1184.636 kb on + strand at 1184.666 kb on + strand at 1184.666 kb on + strand at 1184.709 kb on + strand at 1184.710 kb on - strand at 1184.712 kb on - strand at 1184.738 kb on + strand at 1184.742 kb on - strand at 1185.087 kb on - strand, within CA264_05125 at 1185.167 kb on + strand, within CA264_05125 at 1185.230 kb on - strand, within CA264_05125 at 1185.230 kb on - strand, within CA264_05125 at 1185.306 kb on - strand, within CA264_05125 at 1185.310 kb on + strand, within CA264_05125 at 1185.311 kb on - strand, within CA264_05125 at 1185.318 kb on - strand, within CA264_05125 at 1185.319 kb on + strand, within CA264_05125 at 1185.319 kb on + strand, within CA264_05125 at 1185.360 kb on + strand, within CA264_05125 at 1185.360 kb on + strand, within CA264_05125 at 1185.360 kb on + strand, within CA264_05125 at 1185.361 kb on - strand, within CA264_05125 at 1185.361 kb on - strand, within CA264_05125 at 1185.361 kb on - strand, within CA264_05125 at 1185.363 kb on + strand, within CA264_05125 at 1185.363 kb on + strand, within CA264_05125 at 1185.364 kb on - strand, within CA264_05125 at 1185.424 kb on - strand, within CA264_05125 at 1185.431 kb on + strand, within CA264_05125 at 1185.590 kb on - strand, within CA264_05125 at 1185.621 kb on + strand, within CA264_05125 at 1185.622 kb on - strand, within CA264_05125 at 1185.622 kb on - strand, within CA264_05125 at 1185.622 kb on - strand, within CA264_05125 at 1185.622 kb on - strand, within CA264_05125 at 1185.625 kb on + strand, within CA264_05125 at 1185.625 kb on + strand, within CA264_05125 at 1185.626 kb on + strand, within CA264_05125 at 1185.755 kb on + strand, within CA264_05125 at 1185.778 kb on - strand, within CA264_05125 at 1185.889 kb on + strand, within CA264_05125 at 1185.890 kb on - strand, within CA264_05125 at 1186.039 kb on + strand, within CA264_05125 at 1186.078 kb on - strand, within CA264_05125 at 1186.146 kb on + strand, within CA264_05125 at 1186.147 kb on - strand, within CA264_05125 at 1186.242 kb on - strand, within CA264_05125 at 1186.254 kb on - strand at 1186.395 kb on + strand at 1186.416 kb on + strand at 1186.416 kb on + strand at 1186.416 kb on + strand at 1186.417 kb on - strand at 1186.425 kb on + strand at 1186.425 kb on + strand at 1186.426 kb on - strand at 1186.437 kb on + strand at 1186.438 kb on - strand at 1186.438 kb on - strand at 1186.450 kb on + strand at 1186.470 kb on - strand at 1186.481 kb on + strand at 1186.535 kb on + strand at 1186.535 kb on + strand at 1186.536 kb on - strand at 1186.646 kb on + strand, within CA264_05130 at 1186.647 kb on - strand, within CA264_05130 at 1186.761 kb on + strand, within CA264_05130 at 1186.792 kb on + strand, within CA264_05130 at 1186.855 kb on + strand, within CA264_05130 at 1186.894 kb on - strand, within CA264_05130 at 1186.900 kb on + strand, within CA264_05130 at 1186.984 kb on + strand, within CA264_05130 at 1187.023 kb on - strand, within CA264_05130 at 1187.132 kb on - strand, within CA264_05130 at 1187.135 kb on + strand, within CA264_05130 at 1187.159 kb on - strand, within CA264_05130 at 1187.159 kb on - strand, within CA264_05130 at 1187.202 kb on - strand, within CA264_05130 at 1187.248 kb on + strand, within CA264_05130 at 1187.323 kb on - strand, within CA264_05130 at 1187.323 kb on - strand, within CA264_05130 at 1187.329 kb on + strand, within CA264_05130
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM remove 1,183,890 + CA264_05120 0.25 -0.2 1,183,915 + CA264_05120 0.28 -0.9 1,183,916 - CA264_05120 0.28 -0.3 1,184,010 + CA264_05120 0.39 -0.7 1,184,029 + CA264_05120 0.41 -0.2 1,184,029 + CA264_05120 0.41 +0.1 1,184,029 + CA264_05120 0.41 +0.2 1,184,030 - CA264_05120 0.42 -1.4 1,184,030 - CA264_05120 0.42 -0.5 1,184,030 - CA264_05120 0.42 +0.0 1,184,030 - CA264_05120 0.42 -0.3 1,184,030 - CA264_05120 0.42 -0.3 1,184,030 - CA264_05120 0.42 -0.3 1,184,084 - CA264_05120 0.48 -0.2 1,184,142 - CA264_05120 0.54 -0.1 1,184,144 + CA264_05120 0.55 -0.2 1,184,144 + CA264_05120 0.55 +0.2 1,184,146 + CA264_05120 0.55 +0.7 1,184,216 + CA264_05120 0.63 -0.5 1,184,216 + CA264_05120 0.63 +0.4 1,184,217 - CA264_05120 0.63 +0.7 1,184,228 + CA264_05120 0.64 +0.2 1,184,230 + CA264_05120 0.65 -1.1 1,184,305 + CA264_05120 0.73 -0.8 1,184,423 + CA264_05120 0.87 -2.2 1,184,423 + CA264_05120 0.87 -0.0 1,184,441 - CA264_05120 0.89 -0.4 1,184,450 + -0.3 1,184,451 - +0.8 1,184,454 + +0.3 1,184,561 - +0.1 1,184,628 + -0.3 1,184,633 - -0.8 1,184,633 - -0.3 1,184,636 + -0.0 1,184,636 + -1.3 1,184,666 + -0.5 1,184,666 + +0.3 1,184,709 + -0.1 1,184,710 - +0.3 1,184,712 - -0.4 1,184,738 + +0.6 1,184,742 - -0.6 1,185,087 - CA264_05125 0.15 -0.1 1,185,167 + CA264_05125 0.20 +0.3 1,185,230 - CA264_05125 0.24 -1.0 1,185,230 - CA264_05125 0.24 -0.7 1,185,306 - CA264_05125 0.29 -1.5 1,185,310 + CA264_05125 0.29 -0.2 1,185,311 - CA264_05125 0.29 -0.4 1,185,318 - CA264_05125 0.30 +0.7 1,185,319 + CA264_05125 0.30 -0.9 1,185,319 + CA264_05125 0.30 -0.1 1,185,360 + CA264_05125 0.33 -1.1 1,185,360 + CA264_05125 0.33 +0.7 1,185,360 + CA264_05125 0.33 -0.2 1,185,361 - CA264_05125 0.33 -0.2 1,185,361 - CA264_05125 0.33 +0.0 1,185,361 - CA264_05125 0.33 +0.1 1,185,363 + CA264_05125 0.33 +0.6 1,185,363 + CA264_05125 0.33 +0.7 1,185,364 - CA264_05125 0.33 -0.2 1,185,424 - CA264_05125 0.37 +1.4 1,185,431 + CA264_05125 0.37 -0.4 1,185,590 - CA264_05125 0.47 +0.7 1,185,621 + CA264_05125 0.50 +0.1 1,185,622 - CA264_05125 0.50 -0.2 1,185,622 - CA264_05125 0.50 -1.4 1,185,622 - CA264_05125 0.50 -0.1 1,185,622 - CA264_05125 0.50 -0.2 1,185,625 + CA264_05125 0.50 -0.0 1,185,625 + CA264_05125 0.50 +0.7 1,185,626 + CA264_05125 0.50 -0.3 1,185,755 + CA264_05125 0.58 +0.6 1,185,778 - CA264_05125 0.60 +0.5 1,185,889 + CA264_05125 0.67 +0.1 1,185,890 - CA264_05125 0.67 -0.0 1,186,039 + CA264_05125 0.77 -0.7 1,186,078 - CA264_05125 0.79 -1.2 1,186,146 + CA264_05125 0.84 +0.2 1,186,147 - CA264_05125 0.84 +0.6 1,186,242 - CA264_05125 0.90 -1.1 1,186,254 - -0.3 1,186,395 + +0.6 1,186,416 + +0.1 1,186,416 + +2.3 1,186,416 + +1.3 1,186,417 - +0.3 1,186,425 + -0.9 1,186,425 + -0.1 1,186,426 - -0.7 1,186,437 + -0.4 1,186,438 - +0.3 1,186,438 - +1.6 1,186,450 + +0.0 1,186,470 - +0.4 1,186,481 + -0.7 1,186,535 + +0.2 1,186,535 + -0.4 1,186,536 - -1.5 1,186,646 + CA264_05130 0.19 -0.2 1,186,647 - CA264_05130 0.19 -0.3 1,186,761 + CA264_05130 0.29 -1.6 1,186,792 + CA264_05130 0.32 +0.2 1,186,855 + CA264_05130 0.37 +0.4 1,186,894 - CA264_05130 0.41 -0.3 1,186,900 + CA264_05130 0.41 -0.2 1,186,984 + CA264_05130 0.49 +0.3 1,187,023 - CA264_05130 0.52 -1.7 1,187,132 - CA264_05130 0.61 +1.8 1,187,135 + CA264_05130 0.62 -0.0 1,187,159 - CA264_05130 0.64 +0.3 1,187,159 - CA264_05130 0.64 -0.4 1,187,202 - CA264_05130 0.68 -0.1 1,187,248 + CA264_05130 0.72 -0.7 1,187,323 - CA264_05130 0.78 -0.3 1,187,323 - CA264_05130 0.78 -0.7 1,187,329 + CA264_05130 0.79 -1.3
Or see this region's nucleotide sequence