Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04380

Experiment: m.b. copper (II) chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04375 and CA264_04380 are separated by 79 nucleotidesCA264_04380 and CA264_04385 are separated by 287 nucleotides CA264_04375: CA264_04375 - peptidase, at 1,012,890 to 1,013,804 _04375 CA264_04380: CA264_04380 - response regulator, at 1,013,884 to 1,015,050 _04380 CA264_04385: CA264_04385 - hypothetical protein, at 1,015,338 to 1,015,808 _04385 Position (kb) 1013 1014 1015 1016Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1012.907 kb on + strandat 1013.040 kb on + strand, within CA264_04375at 1013.125 kb on + strand, within CA264_04375at 1013.126 kb on - strand, within CA264_04375at 1013.126 kb on - strand, within CA264_04375at 1013.208 kb on + strand, within CA264_04375at 1013.257 kb on - strand, within CA264_04375at 1013.258 kb on + strand, within CA264_04375at 1013.258 kb on + strand, within CA264_04375at 1013.258 kb on + strand, within CA264_04375at 1013.325 kb on + strand, within CA264_04375at 1013.326 kb on - strand, within CA264_04375at 1013.330 kb on + strand, within CA264_04375at 1013.330 kb on + strand, within CA264_04375at 1013.395 kb on + strand, within CA264_04375at 1013.395 kb on + strand, within CA264_04375at 1013.395 kb on + strand, within CA264_04375at 1013.395 kb on + strand, within CA264_04375at 1013.395 kb on + strand, within CA264_04375at 1013.395 kb on + strand, within CA264_04375at 1013.396 kb on - strand, within CA264_04375at 1013.396 kb on - strand, within CA264_04375at 1013.495 kb on + strand, within CA264_04375at 1013.496 kb on - strand, within CA264_04375at 1013.496 kb on - strand, within CA264_04375at 1013.509 kb on + strand, within CA264_04375at 1013.509 kb on + strand, within CA264_04375at 1013.547 kb on + strand, within CA264_04375at 1013.651 kb on - strand, within CA264_04375at 1013.772 kb on + strandat 1013.774 kb on + strandat 1013.906 kb on + strandat 1014.049 kb on - strand, within CA264_04380at 1014.469 kb on - strand, within CA264_04380at 1014.557 kb on - strand, within CA264_04380at 1014.557 kb on - strand, within CA264_04380at 1014.557 kb on - strand, within CA264_04380at 1014.627 kb on + strand, within CA264_04380at 1014.627 kb on + strand, within CA264_04380at 1014.631 kb on + strand, within CA264_04380at 1014.632 kb on - strand, within CA264_04380at 1014.819 kb on + strand, within CA264_04380at 1014.820 kb on - strand, within CA264_04380at 1014.820 kb on - strand, within CA264_04380at 1014.823 kb on - strand, within CA264_04380at 1014.841 kb on + strand, within CA264_04380at 1014.891 kb on + strand, within CA264_04380at 1014.891 kb on + strand, within CA264_04380at 1014.974 kb on + strandat 1014.974 kb on + strandat 1014.974 kb on + strandat 1014.975 kb on - strandat 1015.031 kb on - strandat 1015.050 kb on + strandat 1015.050 kb on + strandat 1015.060 kb on + strandat 1015.072 kb on + strandat 1015.076 kb on + strandat 1015.076 kb on + strandat 1015.077 kb on - strandat 1015.077 kb on - strandat 1015.078 kb on + strandat 1015.079 kb on - strandat 1015.083 kb on - strandat 1015.139 kb on - strandat 1015.148 kb on - strandat 1015.193 kb on - strandat 1015.198 kb on + strandat 1015.229 kb on + strandat 1015.230 kb on - strandat 1015.256 kb on + strandat 1015.256 kb on + strandat 1015.257 kb on - strandat 1015.257 kb on - strandat 1015.339 kb on + strandat 1015.340 kb on - strandat 1015.367 kb on + strandat 1015.367 kb on + strandat 1015.367 kb on + strandat 1015.368 kb on - strandat 1015.368 kb on - strandat 1015.368 kb on - strandat 1015.368 kb on - strandat 1015.372 kb on - strandat 1015.445 kb on - strand, within CA264_04385at 1015.456 kb on + strand, within CA264_04385at 1015.456 kb on + strand, within CA264_04385at 1015.457 kb on - strand, within CA264_04385at 1015.486 kb on - strand, within CA264_04385at 1015.511 kb on + strand, within CA264_04385at 1015.512 kb on - strand, within CA264_04385at 1015.526 kb on - strand, within CA264_04385at 1015.790 kb on + strandat 1015.798 kb on - strandat 1015.875 kb on - strandat 1015.875 kb on - strandat 1015.875 kb on - strandat 1015.875 kb on - strandat 1015.876 kb on + strandat 1015.876 kb on + strandat 1015.876 kb on + strandat 1015.876 kb on + strandat 1015.877 kb on + strandat 1015.880 kb on - strandat 1015.880 kb on - strandat 1015.897 kb on - strandat 1015.926 kb on + strandat 1015.991 kb on + strandat 1015.993 kb on + strandat 1015.996 kb on - strandat 1015.996 kb on - strandat 1015.998 kb on - strandat 1016.021 kb on + strandat 1016.030 kb on - strandat 1016.037 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM
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1,012,907 + -1.8
1,013,040 + CA264_04375 0.16 -0.9
1,013,125 + CA264_04375 0.26 +0.4
1,013,126 - CA264_04375 0.26 +0.1
1,013,126 - CA264_04375 0.26 +0.9
1,013,208 + CA264_04375 0.35 +0.1
1,013,257 - CA264_04375 0.40 -0.2
1,013,258 + CA264_04375 0.40 -1.4
1,013,258 + CA264_04375 0.40 +0.1
1,013,258 + CA264_04375 0.40 -1.0
1,013,325 + CA264_04375 0.48 -1.0
1,013,326 - CA264_04375 0.48 +0.8
1,013,330 + CA264_04375 0.48 -1.2
1,013,330 + CA264_04375 0.48 +0.2
1,013,395 + CA264_04375 0.55 -0.4
1,013,395 + CA264_04375 0.55 -0.2
1,013,395 + CA264_04375 0.55 -0.2
1,013,395 + CA264_04375 0.55 -0.6
1,013,395 + CA264_04375 0.55 -0.5
1,013,395 + CA264_04375 0.55 -1.2
1,013,396 - CA264_04375 0.55 +0.2
1,013,396 - CA264_04375 0.55 -1.7
1,013,495 + CA264_04375 0.66 -1.3
1,013,496 - CA264_04375 0.66 -0.6
1,013,496 - CA264_04375 0.66 +0.4
1,013,509 + CA264_04375 0.68 -0.6
1,013,509 + CA264_04375 0.68 -1.3
1,013,547 + CA264_04375 0.72 -0.4
1,013,651 - CA264_04375 0.83 +0.3
1,013,772 + -0.6
1,013,774 + -1.3
1,013,906 + -1.3
1,014,049 - CA264_04380 0.14 -1.3
1,014,469 - CA264_04380 0.50 -1.4
1,014,557 - CA264_04380 0.58 +0.4
1,014,557 - CA264_04380 0.58 -3.0
1,014,557 - CA264_04380 0.58 -1.7
1,014,627 + CA264_04380 0.64 -1.7
1,014,627 + CA264_04380 0.64 -0.9
1,014,631 + CA264_04380 0.64 -1.5
1,014,632 - CA264_04380 0.64 -1.1
1,014,819 + CA264_04380 0.80 +0.1
1,014,820 - CA264_04380 0.80 -1.2
1,014,820 - CA264_04380 0.80 -2.6
1,014,823 - CA264_04380 0.80 -2.6
1,014,841 + CA264_04380 0.82 -1.6
1,014,891 + CA264_04380 0.86 -1.7
1,014,891 + CA264_04380 0.86 -0.7
1,014,974 + -2.0
1,014,974 + -1.1
1,014,974 + -2.8
1,014,975 - -2.3
1,015,031 - -2.3
1,015,050 + -0.8
1,015,050 + -0.7
1,015,060 + -1.5
1,015,072 + -1.0
1,015,076 + +0.5
1,015,076 + -1.3
1,015,077 - +0.5
1,015,077 - -1.2
1,015,078 + -0.5
1,015,079 - -1.4
1,015,083 - +1.7
1,015,139 - +0.8
1,015,148 - -0.2
1,015,193 - +0.2
1,015,198 + +0.4
1,015,229 + +0.3
1,015,230 - -0.6
1,015,256 + +0.5
1,015,256 + -0.0
1,015,257 - +0.7
1,015,257 - +0.4
1,015,339 + -0.5
1,015,340 - +0.7
1,015,367 + +0.1
1,015,367 + -0.9
1,015,367 + +1.1
1,015,368 - +0.1
1,015,368 - -0.2
1,015,368 - -1.6
1,015,368 - -0.4
1,015,372 - +0.6
1,015,445 - CA264_04385 0.23 +1.1
1,015,456 + CA264_04385 0.25 -0.8
1,015,456 + CA264_04385 0.25 +0.7
1,015,457 - CA264_04385 0.25 -0.5
1,015,486 - CA264_04385 0.31 +0.9
1,015,511 + CA264_04385 0.37 -0.3
1,015,512 - CA264_04385 0.37 +1.3
1,015,526 - CA264_04385 0.40 +0.8
1,015,790 + +0.6
1,015,798 - -1.2
1,015,875 - +0.5
1,015,875 - +0.0
1,015,875 - +0.1
1,015,875 - +1.5
1,015,876 + -0.3
1,015,876 + -0.0
1,015,876 + +0.8
1,015,876 + -0.4
1,015,877 + -0.2
1,015,880 - -0.6
1,015,880 - -0.3
1,015,897 - +0.5
1,015,926 + -0.2
1,015,991 + -0.3
1,015,993 + -0.2
1,015,996 - -0.6
1,015,996 - -0.4
1,015,998 - +0.0
1,016,021 + -0.3
1,016,030 - +3.4
1,016,037 + -0.2

Or see this region's nucleotide sequence