Experiment: m.b. copper (II) chloride 0.16 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03570 and CA264_03575 overlap by 14 nucleotides CA264_03575 and CA264_03580 are separated by 100 nucleotides
CA264_03570: CA264_03570 - hypothetical protein, at 830,940 to 831,854
_03570
CA264_03575: CA264_03575 - hypothetical protein, at 831,841 to 832,755
_03575
CA264_03580: CA264_03580 - ATP-dependent helicase HrpB, at 832,856 to 835,303
_03580
Position (kb) 831
832
833 Strain fitness (log2 ratio) -2
-1
0
1
2 at 830.862 kb on + strand at 830.880 kb on - strand at 830.891 kb on - strand at 830.891 kb on - strand at 830.893 kb on + strand at 830.902 kb on - strand at 830.907 kb on + strand at 830.907 kb on + strand at 830.908 kb on - strand at 830.911 kb on + strand at 830.912 kb on - strand at 830.918 kb on + strand at 830.918 kb on + strand at 830.919 kb on - strand at 830.919 kb on - strand at 830.919 kb on - strand at 830.923 kb on + strand at 830.925 kb on + strand at 830.925 kb on + strand at 830.926 kb on - strand at 830.926 kb on - strand at 830.948 kb on + strand at 831.026 kb on + strand at 831.028 kb on + strand at 831.028 kb on + strand at 831.029 kb on - strand at 831.049 kb on + strand, within CA264_03570 at 831.071 kb on + strand, within CA264_03570 at 831.111 kb on + strand, within CA264_03570 at 831.140 kb on - strand, within CA264_03570 at 831.140 kb on - strand, within CA264_03570 at 831.168 kb on - strand at 831.194 kb on - strand, within CA264_03570 at 831.194 kb on - strand, within CA264_03570 at 831.194 kb on - strand, within CA264_03570 at 831.197 kb on - strand, within CA264_03570 at 831.223 kb on - strand, within CA264_03570 at 831.236 kb on - strand, within CA264_03570 at 831.239 kb on + strand, within CA264_03570 at 831.265 kb on + strand, within CA264_03570 at 831.266 kb on - strand, within CA264_03570 at 831.359 kb on - strand, within CA264_03570 at 831.433 kb on + strand, within CA264_03570 at 831.433 kb on + strand, within CA264_03570 at 831.434 kb on - strand, within CA264_03570 at 831.445 kb on + strand, within CA264_03570 at 831.446 kb on - strand, within CA264_03570 at 831.467 kb on - strand, within CA264_03570 at 831.512 kb on + strand, within CA264_03570 at 831.513 kb on - strand, within CA264_03570 at 831.513 kb on - strand, within CA264_03570 at 831.517 kb on - strand, within CA264_03570 at 831.517 kb on - strand, within CA264_03570 at 831.517 kb on - strand, within CA264_03570 at 831.517 kb on - strand, within CA264_03570 at 831.574 kb on + strand, within CA264_03570 at 831.615 kb on + strand, within CA264_03570 at 831.616 kb on - strand, within CA264_03570 at 831.617 kb on + strand, within CA264_03570 at 831.617 kb on + strand, within CA264_03570 at 831.618 kb on - strand, within CA264_03570 at 831.623 kb on + strand, within CA264_03570 at 831.623 kb on + strand, within CA264_03570 at 831.627 kb on + strand, within CA264_03570 at 831.628 kb on - strand, within CA264_03570 at 831.629 kb on + strand, within CA264_03570 at 831.629 kb on + strand, within CA264_03570 at 831.630 kb on - strand, within CA264_03570 at 831.633 kb on + strand, within CA264_03570 at 831.633 kb on + strand, within CA264_03570 at 831.680 kb on + strand, within CA264_03570 at 831.695 kb on + strand, within CA264_03570 at 831.696 kb on - strand, within CA264_03570 at 831.696 kb on - strand, within CA264_03570 at 831.698 kb on - strand, within CA264_03570 at 831.698 kb on - strand, within CA264_03570 at 831.718 kb on - strand, within CA264_03570 at 831.718 kb on - strand, within CA264_03570 at 831.718 kb on - strand, within CA264_03570 at 831.729 kb on + strand, within CA264_03570 at 831.730 kb on - strand, within CA264_03570 at 831.740 kb on + strand, within CA264_03570 at 831.751 kb on - strand, within CA264_03570 at 831.770 kb on + strand at 831.771 kb on - strand at 831.867 kb on + strand at 831.869 kb on + strand at 831.869 kb on + strand at 831.869 kb on + strand at 831.927 kb on + strand at 832.006 kb on + strand, within CA264_03575 at 832.007 kb on - strand, within CA264_03575 at 832.007 kb on - strand, within CA264_03575 at 832.007 kb on - strand, within CA264_03575 at 832.008 kb on + strand, within CA264_03575 at 832.009 kb on - strand, within CA264_03575 at 832.009 kb on - strand, within CA264_03575 at 832.010 kb on + strand, within CA264_03575 at 832.047 kb on + strand, within CA264_03575 at 832.048 kb on - strand, within CA264_03575 at 832.064 kb on - strand, within CA264_03575 at 832.064 kb on - strand, within CA264_03575 at 832.065 kb on + strand, within CA264_03575 at 832.066 kb on - strand, within CA264_03575 at 832.212 kb on - strand, within CA264_03575 at 832.228 kb on - strand, within CA264_03575 at 832.241 kb on + strand, within CA264_03575 at 832.244 kb on + strand, within CA264_03575 at 832.263 kb on - strand, within CA264_03575 at 832.266 kb on + strand, within CA264_03575 at 832.267 kb on - strand, within CA264_03575 at 832.292 kb on + strand, within CA264_03575 at 832.292 kb on + strand, within CA264_03575 at 832.293 kb on - strand, within CA264_03575 at 832.293 kb on - strand, within CA264_03575 at 832.293 kb on - strand, within CA264_03575 at 832.293 kb on - strand, within CA264_03575 at 832.301 kb on + strand, within CA264_03575 at 832.301 kb on + strand, within CA264_03575 at 832.301 kb on + strand, within CA264_03575 at 832.301 kb on + strand, within CA264_03575 at 832.301 kb on + strand, within CA264_03575 at 832.301 kb on + strand, within CA264_03575 at 832.302 kb on - strand, within CA264_03575 at 832.302 kb on - strand, within CA264_03575 at 832.305 kb on + strand, within CA264_03575 at 832.305 kb on + strand, within CA264_03575 at 832.306 kb on - strand, within CA264_03575 at 832.365 kb on - strand, within CA264_03575 at 832.460 kb on - strand, within CA264_03575 at 832.460 kb on - strand, within CA264_03575 at 832.485 kb on + strand, within CA264_03575 at 832.503 kb on + strand, within CA264_03575 at 832.539 kb on + strand, within CA264_03575 at 832.539 kb on + strand, within CA264_03575 at 832.539 kb on + strand, within CA264_03575 at 832.582 kb on - strand, within CA264_03575 at 832.594 kb on - strand, within CA264_03575 at 832.653 kb on - strand, within CA264_03575 at 832.661 kb on - strand, within CA264_03575 at 832.661 kb on - strand, within CA264_03575 at 832.762 kb on - strand at 832.762 kb on - strand at 832.784 kb on + strand at 832.785 kb on - strand at 832.787 kb on + strand at 832.793 kb on - strand at 832.801 kb on + strand at 832.802 kb on - strand at 832.805 kb on + strand at 832.805 kb on + strand at 832.805 kb on + strand at 832.836 kb on - strand at 832.842 kb on + strand at 832.845 kb on - strand at 832.849 kb on + strand at 832.849 kb on + strand at 832.873 kb on + strand at 832.902 kb on + strand at 832.903 kb on - strand at 832.936 kb on + strand at 832.936 kb on + strand at 832.936 kb on + strand at 832.937 kb on - strand at 832.947 kb on + strand at 832.970 kb on - strand at 833.277 kb on + strand, within CA264_03580 at 833.278 kb on - strand, within CA264_03580 at 833.333 kb on - strand, within CA264_03580 at 833.347 kb on + strand, within CA264_03580 at 833.401 kb on + strand, within CA264_03580 at 833.402 kb on - strand, within CA264_03580 at 833.402 kb on - strand, within CA264_03580 at 833.432 kb on + strand, within CA264_03580 at 833.432 kb on + strand, within CA264_03580 at 833.485 kb on - strand, within CA264_03580 at 833.644 kb on + strand, within CA264_03580 at 833.689 kb on + strand, within CA264_03580 at 833.690 kb on - strand, within CA264_03580 at 833.690 kb on - strand, within CA264_03580 at 833.712 kb on + strand, within CA264_03580 at 833.713 kb on - strand, within CA264_03580 at 833.720 kb on - strand, within CA264_03580
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM remove 830,862 + -0.6 830,880 - -0.9 830,891 - +0.5 830,891 - +0.4 830,893 + -1.5 830,902 - +2.4 830,907 + -1.7 830,907 + -0.1 830,908 - +0.1 830,911 + +0.6 830,912 - +0.1 830,918 + -0.3 830,918 + -0.4 830,919 - -0.6 830,919 - -0.8 830,919 - -0.1 830,923 + +0.4 830,925 + +0.6 830,925 + -0.2 830,926 - +0.7 830,926 - +1.7 830,948 + -0.4 831,026 + -1.7 831,028 + -0.1 831,028 + +0.4 831,029 - -0.6 831,049 + CA264_03570 0.12 +1.6 831,071 + CA264_03570 0.14 -0.5 831,111 + CA264_03570 0.19 +0.2 831,140 - CA264_03570 0.22 +0.1 831,140 - CA264_03570 0.22 +0.7 831,168 - -0.2 831,194 - CA264_03570 0.28 +0.2 831,194 - CA264_03570 0.28 +0.8 831,194 - CA264_03570 0.28 -0.1 831,197 - CA264_03570 0.28 +0.6 831,223 - CA264_03570 0.31 +1.2 831,236 - CA264_03570 0.32 +0.2 831,239 + CA264_03570 0.33 +0.1 831,265 + CA264_03570 0.36 +0.2 831,266 - CA264_03570 0.36 -0.2 831,359 - CA264_03570 0.46 +0.3 831,433 + CA264_03570 0.54 -0.6 831,433 + CA264_03570 0.54 +0.4 831,434 - CA264_03570 0.54 +0.3 831,445 + CA264_03570 0.55 -0.9 831,446 - CA264_03570 0.55 +0.3 831,467 - CA264_03570 0.58 +0.1 831,512 + CA264_03570 0.63 -1.1 831,513 - CA264_03570 0.63 +0.5 831,513 - CA264_03570 0.63 +0.3 831,517 - CA264_03570 0.63 +0.3 831,517 - CA264_03570 0.63 +1.2 831,517 - CA264_03570 0.63 +0.2 831,517 - CA264_03570 0.63 -0.5 831,574 + CA264_03570 0.69 +0.5 831,615 + CA264_03570 0.74 -0.3 831,616 - CA264_03570 0.74 +0.3 831,617 + CA264_03570 0.74 -0.2 831,617 + CA264_03570 0.74 +0.1 831,618 - CA264_03570 0.74 +0.3 831,623 + CA264_03570 0.75 -0.0 831,623 + CA264_03570 0.75 -0.2 831,627 + CA264_03570 0.75 +0.3 831,628 - CA264_03570 0.75 -0.2 831,629 + CA264_03570 0.75 -0.9 831,629 + CA264_03570 0.75 +0.4 831,630 - CA264_03570 0.75 +0.0 831,633 + CA264_03570 0.76 +0.8 831,633 + CA264_03570 0.76 +0.3 831,680 + CA264_03570 0.81 -1.2 831,695 + CA264_03570 0.83 -0.2 831,696 - CA264_03570 0.83 +1.1 831,696 - CA264_03570 0.83 +0.3 831,698 - CA264_03570 0.83 +0.1 831,698 - CA264_03570 0.83 -1.8 831,718 - CA264_03570 0.85 +0.0 831,718 - CA264_03570 0.85 +0.5 831,718 - CA264_03570 0.85 +0.3 831,729 + CA264_03570 0.86 -0.2 831,730 - CA264_03570 0.86 +0.0 831,740 + CA264_03570 0.87 -0.5 831,751 - CA264_03570 0.89 +0.5 831,770 + +0.3 831,771 - +0.7 831,867 + -0.1 831,869 + +0.3 831,869 + +0.7 831,869 + -0.2 831,927 + +0.3 832,006 + CA264_03575 0.18 -0.1 832,007 - CA264_03575 0.18 +0.3 832,007 - CA264_03575 0.18 -0.1 832,007 - CA264_03575 0.18 +0.1 832,008 + CA264_03575 0.18 -0.5 832,009 - CA264_03575 0.18 -0.2 832,009 - CA264_03575 0.18 -1.5 832,010 + CA264_03575 0.18 -0.6 832,047 + CA264_03575 0.23 -0.1 832,048 - CA264_03575 0.23 +0.1 832,064 - CA264_03575 0.24 +1.6 832,064 - CA264_03575 0.24 +0.5 832,065 + CA264_03575 0.24 +0.2 832,066 - CA264_03575 0.25 +0.1 832,212 - CA264_03575 0.41 +0.4 832,228 - CA264_03575 0.42 +0.7 832,241 + CA264_03575 0.44 +0.5 832,244 + CA264_03575 0.44 -1.4 832,263 - CA264_03575 0.46 +0.1 832,266 + CA264_03575 0.46 +0.6 832,267 - CA264_03575 0.47 +0.6 832,292 + CA264_03575 0.49 +1.7 832,292 + CA264_03575 0.49 -0.4 832,293 - CA264_03575 0.49 +0.4 832,293 - CA264_03575 0.49 -0.7 832,293 - CA264_03575 0.49 -0.2 832,293 - CA264_03575 0.49 +0.6 832,301 + CA264_03575 0.50 +0.3 832,301 + CA264_03575 0.50 +0.2 832,301 + CA264_03575 0.50 -0.3 832,301 + CA264_03575 0.50 +0.1 832,301 + CA264_03575 0.50 -0.0 832,301 + CA264_03575 0.50 -0.7 832,302 - CA264_03575 0.50 -0.0 832,302 - CA264_03575 0.50 +0.2 832,305 + CA264_03575 0.51 +0.2 832,305 + CA264_03575 0.51 +0.1 832,306 - CA264_03575 0.51 +0.9 832,365 - CA264_03575 0.57 +1.6 832,460 - CA264_03575 0.68 +1.3 832,460 - CA264_03575 0.68 +0.5 832,485 + CA264_03575 0.70 +0.2 832,503 + CA264_03575 0.72 -0.2 832,539 + CA264_03575 0.76 -0.1 832,539 + CA264_03575 0.76 -0.6 832,539 + CA264_03575 0.76 -1.9 832,582 - CA264_03575 0.81 +0.7 832,594 - CA264_03575 0.82 +0.5 832,653 - CA264_03575 0.89 +0.7 832,661 - CA264_03575 0.90 +1.3 832,661 - CA264_03575 0.90 +0.7 832,762 - +0.4 832,762 - +0.9 832,784 + -0.1 832,785 - +1.4 832,787 + +0.5 832,793 - -0.3 832,801 + -0.7 832,802 - +0.5 832,805 + +0.8 832,805 + -0.7 832,805 + -1.1 832,836 - +0.5 832,842 + +1.7 832,845 - +0.4 832,849 + +0.0 832,849 + +0.1 832,873 + -0.4 832,902 + -1.6 832,903 - +0.9 832,936 + +0.1 832,936 + -0.9 832,936 + -0.3 832,937 - +0.5 832,947 + +0.1 832,970 - -0.2 833,277 + CA264_03580 0.17 +2.0 833,278 - CA264_03580 0.17 +0.9 833,333 - CA264_03580 0.19 -0.4 833,347 + CA264_03580 0.20 -0.3 833,401 + CA264_03580 0.22 -0.5 833,402 - CA264_03580 0.22 -0.3 833,402 - CA264_03580 0.22 +0.1 833,432 + CA264_03580 0.24 +0.9 833,432 + CA264_03580 0.24 -0.2 833,485 - CA264_03580 0.26 +0.4 833,644 + CA264_03580 0.32 -0.1 833,689 + CA264_03580 0.34 -0.2 833,690 - CA264_03580 0.34 -1.4 833,690 - CA264_03580 0.34 -0.3 833,712 + CA264_03580 0.35 -0.0 833,713 - CA264_03580 0.35 -0.4 833,720 - CA264_03580 0.35 -0.7
Or see this region's nucleotide sequence