Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02355

Experiment: m.b. copper (II) chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02350 and CA264_02355 are separated by 148 nucleotidesCA264_02355 and CA264_02360 are separated by 179 nucleotidesCA264_02360 and CA264_02365 overlap by 8 nucleotides CA264_02350: CA264_02350 - nicotinate phosphoribosyltransferase, at 542,442 to 543,908 _02350 CA264_02355: CA264_02355 - hypothetical protein, at 544,057 to 545,112 _02355 CA264_02360: CA264_02360 - exodeoxyribonuclease VII small subunit, at 545,292 to 545,555 _02360 CA264_02365: CA264_02365 - exodeoxyribonuclease VII large subunit, at 545,548 to 547,107 _02365 Position (kb) 544 545 546Strain fitness (log2 ratio) -2 -1 0 1 2at 543.077 kb on - strand, within CA264_02350at 543.190 kb on - strand, within CA264_02350at 543.204 kb on - strand, within CA264_02350at 543.352 kb on + strand, within CA264_02350at 543.422 kb on + strand, within CA264_02350at 543.422 kb on + strand, within CA264_02350at 543.423 kb on - strand, within CA264_02350at 543.622 kb on + strand, within CA264_02350at 543.721 kb on + strand, within CA264_02350at 543.757 kb on + strand, within CA264_02350at 543.758 kb on - strand, within CA264_02350at 543.788 kb on - strandat 543.788 kb on - strandat 543.788 kb on - strandat 543.890 kb on - strandat 543.892 kb on - strandat 543.915 kb on + strandat 543.915 kb on + strandat 543.916 kb on - strandat 543.916 kb on - strandat 543.916 kb on - strandat 543.948 kb on + strandat 543.948 kb on + strandat 543.948 kb on + strandat 543.948 kb on + strandat 543.948 kb on + strandat 543.948 kb on + strandat 543.949 kb on - strandat 543.949 kb on - strandat 543.949 kb on - strandat 543.950 kb on + strandat 543.950 kb on + strandat 543.951 kb on - strandat 544.039 kb on + strandat 544.039 kb on + strandat 544.039 kb on + strandat 544.040 kb on - strandat 544.040 kb on - strandat 544.074 kb on + strandat 544.098 kb on + strandat 544.098 kb on + strandat 544.099 kb on - strandat 544.257 kb on + strand, within CA264_02355at 544.277 kb on + strand, within CA264_02355at 544.278 kb on - strand, within CA264_02355at 544.621 kb on - strand, within CA264_02355at 544.624 kb on + strand, within CA264_02355at 544.625 kb on - strand, within CA264_02355at 544.625 kb on - strand, within CA264_02355at 544.625 kb on - strand, within CA264_02355at 544.699 kb on + strand, within CA264_02355at 544.699 kb on + strand, within CA264_02355at 544.699 kb on + strand, within CA264_02355at 544.699 kb on + strand, within CA264_02355at 544.702 kb on + strand, within CA264_02355at 544.703 kb on - strand, within CA264_02355at 544.712 kb on - strand, within CA264_02355at 544.766 kb on - strand, within CA264_02355at 544.766 kb on - strand, within CA264_02355at 544.779 kb on + strand, within CA264_02355at 544.780 kb on - strand, within CA264_02355at 544.783 kb on + strand, within CA264_02355at 544.783 kb on + strand, within CA264_02355at 544.783 kb on + strand, within CA264_02355at 544.784 kb on - strand, within CA264_02355at 545.036 kb on - strandat 545.038 kb on + strandat 545.038 kb on + strandat 545.039 kb on - strandat 545.039 kb on - strandat 545.073 kb on + strandat 545.110 kb on + strandat 545.124 kb on - strandat 545.128 kb on + strandat 545.129 kb on - strandat 545.146 kb on - strandat 545.159 kb on + strandat 545.159 kb on + strandat 545.210 kb on - strandat 545.210 kb on - strandat 545.211 kb on + strandat 545.318 kb on + strandat 545.318 kb on + strandat 545.319 kb on - strand, within CA264_02360at 545.469 kb on + strand, within CA264_02360at 545.505 kb on + strand, within CA264_02360at 545.506 kb on - strand, within CA264_02360at 545.527 kb on + strand, within CA264_02360at 545.541 kb on + strandat 545.542 kb on - strandat 545.560 kb on - strandat 545.569 kb on + strandat 545.641 kb on - strandat 545.647 kb on - strandat 545.679 kb on - strandat 545.787 kb on + strand, within CA264_02365at 545.823 kb on + strand, within CA264_02365

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM
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543,077 - CA264_02350 0.43 -0.5
543,190 - CA264_02350 0.51 -0.1
543,204 - CA264_02350 0.52 +1.3
543,352 + CA264_02350 0.62 +0.1
543,422 + CA264_02350 0.67 -1.1
543,422 + CA264_02350 0.67 -0.5
543,423 - CA264_02350 0.67 +0.2
543,622 + CA264_02350 0.80 +1.3
543,721 + CA264_02350 0.87 -0.1
543,757 + CA264_02350 0.90 +0.3
543,758 - CA264_02350 0.90 +0.1
543,788 - +0.7
543,788 - -0.5
543,788 - +1.2
543,890 - -0.2
543,892 - -0.2
543,915 + -0.6
543,915 + +0.1
543,916 - +0.6
543,916 - -0.5
543,916 - -0.7
543,948 + +1.6
543,948 + -0.4
543,948 + +0.2
543,948 + -0.1
543,948 + -0.4
543,948 + -0.8
543,949 - -0.0
543,949 - +0.1
543,949 - -0.1
543,950 + +0.4
543,950 + -1.4
543,951 - +0.5
544,039 + -0.5
544,039 + -0.2
544,039 + -0.2
544,040 - -0.0
544,040 - -1.0
544,074 + +0.3
544,098 + +0.1
544,098 + -0.9
544,099 - +0.1
544,257 + CA264_02355 0.19 +1.6
544,277 + CA264_02355 0.21 -1.0
544,278 - CA264_02355 0.21 +0.0
544,621 - CA264_02355 0.53 +0.5
544,624 + CA264_02355 0.54 +1.0
544,625 - CA264_02355 0.54 +1.9
544,625 - CA264_02355 0.54 -0.2
544,625 - CA264_02355 0.54 +0.9
544,699 + CA264_02355 0.61 -1.2
544,699 + CA264_02355 0.61 +0.5
544,699 + CA264_02355 0.61 -0.8
544,699 + CA264_02355 0.61 +0.3
544,702 + CA264_02355 0.61 +0.2
544,703 - CA264_02355 0.61 +0.5
544,712 - CA264_02355 0.62 -0.2
544,766 - CA264_02355 0.67 -0.4
544,766 - CA264_02355 0.67 +0.6
544,779 + CA264_02355 0.68 +1.1
544,780 - CA264_02355 0.68 +1.4
544,783 + CA264_02355 0.69 -0.0
544,783 + CA264_02355 0.69 -1.8
544,783 + CA264_02355 0.69 -0.3
544,784 - CA264_02355 0.69 +1.4
545,036 - -0.4
545,038 + +0.2
545,038 + -1.4
545,039 - +1.2
545,039 - -0.7
545,073 + +0.1
545,110 + -0.8
545,124 - +0.1
545,128 + +0.6
545,129 - -1.0
545,146 - +0.1
545,159 + +1.3
545,159 + +0.2
545,210 - -0.9
545,210 - +0.2
545,211 + +0.0
545,318 + -0.8
545,318 + +0.2
545,319 - CA264_02360 0.10 -0.7
545,469 + CA264_02360 0.67 -0.4
545,505 + CA264_02360 0.81 -0.0
545,506 - CA264_02360 0.81 -0.4
545,527 + CA264_02360 0.89 -0.1
545,541 + +0.4
545,542 - -0.4
545,560 - -0.3
545,569 + +0.3
545,641 - +0.4
545,647 - -0.0
545,679 - -2.4
545,787 + CA264_02365 0.15 -0.5
545,823 + CA264_02365 0.18 +0.2

Or see this region's nucleotide sequence