Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00660

Experiment: m.b. copper (II) chloride 0.16 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00655 and CA264_00660 are separated by 300 nucleotidesCA264_00660 and CA264_00665 overlap by 10 nucleotidesCA264_00665 and CA264_00670 are separated by 184 nucleotides CA264_00655: CA264_00655 - tRNA-guanine(34) transglycosylase, at 144,271 to 145,401 _00655 CA264_00660: CA264_00660 - hypothetical protein, at 145,702 to 146,778 _00660 CA264_00665: CA264_00665 - RNA polymerase subunit sigma-24, at 146,769 to 147,377 _00665 CA264_00670: CA264_00670 - hypothetical protein, at 147,562 to 147,783 _00670 Position (kb) 145 146 147Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 144.707 kb on + strand, within CA264_00655at 144.707 kb on + strand, within CA264_00655at 144.708 kb on - strand, within CA264_00655at 144.809 kb on + strand, within CA264_00655at 144.810 kb on - strand, within CA264_00655at 144.810 kb on - strand, within CA264_00655at 144.854 kb on + strand, within CA264_00655at 144.854 kb on + strand, within CA264_00655at 144.919 kb on - strand, within CA264_00655at 145.038 kb on + strand, within CA264_00655at 145.109 kb on - strand, within CA264_00655at 145.109 kb on - strand, within CA264_00655at 145.135 kb on + strand, within CA264_00655at 145.136 kb on - strand, within CA264_00655at 145.136 kb on - strand, within CA264_00655at 145.208 kb on + strand, within CA264_00655at 145.209 kb on - strand, within CA264_00655at 145.210 kb on + strand, within CA264_00655at 145.210 kb on + strand, within CA264_00655at 145.211 kb on - strand, within CA264_00655at 145.218 kb on - strand, within CA264_00655at 145.308 kb on + strandat 145.407 kb on + strandat 145.408 kb on - strandat 145.470 kb on + strandat 145.471 kb on - strandat 145.511 kb on - strandat 145.511 kb on - strandat 145.517 kb on + strandat 145.572 kb on + strandat 145.573 kb on - strandat 145.575 kb on - strandat 145.575 kb on - strandat 145.583 kb on + strandat 145.638 kb on - strandat 145.638 kb on - strandat 145.673 kb on - strandat 145.673 kb on - strandat 145.687 kb on - strandat 145.687 kb on - strandat 145.728 kb on - strandat 145.728 kb on - strandat 145.729 kb on + strandat 145.730 kb on - strandat 145.931 kb on - strand, within CA264_00660at 145.931 kb on - strand, within CA264_00660at 145.931 kb on - strand, within CA264_00660at 145.931 kb on - strand, within CA264_00660at 145.937 kb on - strand, within CA264_00660at 145.937 kb on - strand, within CA264_00660at 145.937 kb on - strand, within CA264_00660at 146.123 kb on - strand, within CA264_00660at 146.258 kb on - strand, within CA264_00660at 146.285 kb on - strand, within CA264_00660at 146.285 kb on - strand, within CA264_00660at 146.285 kb on - strand, within CA264_00660at 146.337 kb on - strand, within CA264_00660at 146.383 kb on - strand, within CA264_00660at 146.383 kb on - strand, within CA264_00660at 146.392 kb on - strand, within CA264_00660at 146.395 kb on - strand, within CA264_00660at 146.395 kb on - strand, within CA264_00660at 146.395 kb on - strand, within CA264_00660at 146.428 kb on - strand, within CA264_00660at 146.529 kb on + strand, within CA264_00660at 146.542 kb on - strand, within CA264_00660at 146.555 kb on + strand, within CA264_00660at 146.579 kb on + strand, within CA264_00660at 146.580 kb on - strand, within CA264_00660at 146.592 kb on - strand, within CA264_00660at 146.592 kb on - strand, within CA264_00660at 146.592 kb on - strand, within CA264_00660at 146.592 kb on - strand, within CA264_00660at 146.601 kb on - strand, within CA264_00660at 146.624 kb on - strand, within CA264_00660at 146.667 kb on - strand, within CA264_00660at 146.750 kb on + strandat 146.756 kb on - strandat 146.780 kb on + strandat 146.780 kb on + strandat 146.819 kb on - strandat 146.834 kb on - strand, within CA264_00665at 146.874 kb on - strand, within CA264_00665at 146.878 kb on - strand, within CA264_00665at 146.981 kb on + strand, within CA264_00665at 146.981 kb on + strand, within CA264_00665at 146.982 kb on - strand, within CA264_00665at 146.982 kb on - strand, within CA264_00665at 146.982 kb on - strand, within CA264_00665at 146.982 kb on - strand, within CA264_00665at 147.008 kb on + strand, within CA264_00665at 147.009 kb on - strand, within CA264_00665at 147.009 kb on - strand, within CA264_00665at 147.041 kb on + strand, within CA264_00665at 147.188 kb on + strand, within CA264_00665at 147.189 kb on - strand, within CA264_00665at 147.223 kb on - strand, within CA264_00665at 147.343 kb on - strandat 147.396 kb on + strandat 147.397 kb on - strandat 147.397 kb on - strandat 147.448 kb on - strandat 147.449 kb on + strandat 147.449 kb on + strandat 147.450 kb on - strandat 147.450 kb on - strandat 147.453 kb on + strandat 147.453 kb on + strandat 147.454 kb on - strandat 147.478 kb on + strandat 147.491 kb on + strandat 147.492 kb on - strandat 147.503 kb on + strandat 147.504 kb on - strandat 147.527 kb on + strandat 147.527 kb on + strandat 147.528 kb on - strandat 147.529 kb on + strandat 147.557 kb on + strandat 147.558 kb on - strandat 147.558 kb on - strandat 147.558 kb on - strandat 147.558 kb on - strandat 147.559 kb on + strandat 147.560 kb on - strandat 147.560 kb on - strandat 147.560 kb on - strandat 147.573 kb on - strandat 147.585 kb on + strand, within CA264_00670at 147.585 kb on + strand, within CA264_00670at 147.585 kb on + strand, within CA264_00670at 147.586 kb on - strand, within CA264_00670at 147.587 kb on + strand, within CA264_00670at 147.587 kb on + strand, within CA264_00670at 147.588 kb on - strand, within CA264_00670at 147.593 kb on + strand, within CA264_00670at 147.593 kb on + strand, within CA264_00670at 147.593 kb on + strand, within CA264_00670at 147.594 kb on - strand, within CA264_00670at 147.594 kb on - strand, within CA264_00670at 147.594 kb on - strand, within CA264_00670at 147.594 kb on - strand, within CA264_00670at 147.594 kb on - strand, within CA264_00670at 147.599 kb on + strand, within CA264_00670at 147.610 kb on + strand, within CA264_00670at 147.627 kb on + strand, within CA264_00670at 147.657 kb on + strand, within CA264_00670at 147.667 kb on + strand, within CA264_00670at 147.730 kb on - strand, within CA264_00670at 147.730 kb on - strand, within CA264_00670at 147.732 kb on - strand, within CA264_00670at 147.732 kb on - strand, within CA264_00670at 147.732 kb on - strand, within CA264_00670at 147.732 kb on - strand, within CA264_00670

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. copper (II) chloride 0.16 mM
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144,707 + CA264_00655 0.39 -0.8
144,707 + CA264_00655 0.39 -0.4
144,708 - CA264_00655 0.39 -0.4
144,809 + CA264_00655 0.48 -2.2
144,810 - CA264_00655 0.48 -0.4
144,810 - CA264_00655 0.48 -0.9
144,854 + CA264_00655 0.52 -2.1
144,854 + CA264_00655 0.52 +0.0
144,919 - CA264_00655 0.57 -0.4
145,038 + CA264_00655 0.68 +0.8
145,109 - CA264_00655 0.74 -1.8
145,109 - CA264_00655 0.74 +1.8
145,135 + CA264_00655 0.76 -0.3
145,136 - CA264_00655 0.76 -0.5
145,136 - CA264_00655 0.76 -1.1
145,208 + CA264_00655 0.83 -0.2
145,209 - CA264_00655 0.83 -0.7
145,210 + CA264_00655 0.83 +0.6
145,210 + CA264_00655 0.83 -1.3
145,211 - CA264_00655 0.83 -0.3
145,218 - CA264_00655 0.84 -2.6
145,308 + -0.5
145,407 + -0.2
145,408 - +1.1
145,470 + -0.2
145,471 - -0.5
145,511 - -1.1
145,511 - -2.6
145,517 + +0.7
145,572 + +0.8
145,573 - +0.3
145,575 - +1.0
145,575 - +1.1
145,583 + -0.0
145,638 - +0.1
145,638 - +1.8
145,673 - -0.4
145,673 - +0.1
145,687 - -1.7
145,687 - -0.9
145,728 - -0.9
145,728 - -0.6
145,729 + -0.8
145,730 - -2.7
145,931 - CA264_00660 0.21 -2.6
145,931 - CA264_00660 0.21 -1.9
145,931 - CA264_00660 0.21 -2.7
145,931 - CA264_00660 0.21 -2.5
145,937 - CA264_00660 0.22 -2.6
145,937 - CA264_00660 0.22 -2.3
145,937 - CA264_00660 0.22 -1.4
146,123 - CA264_00660 0.39 -2.0
146,258 - CA264_00660 0.52 -2.0
146,285 - CA264_00660 0.54 -1.4
146,285 - CA264_00660 0.54 -1.7
146,285 - CA264_00660 0.54 -1.9
146,337 - CA264_00660 0.59 -1.3
146,383 - CA264_00660 0.63 -3.1
146,383 - CA264_00660 0.63 -2.1
146,392 - CA264_00660 0.64 +0.1
146,395 - CA264_00660 0.64 -0.4
146,395 - CA264_00660 0.64 -1.8
146,395 - CA264_00660 0.64 -2.2
146,428 - CA264_00660 0.67 -3.5
146,529 + CA264_00660 0.77 -1.0
146,542 - CA264_00660 0.78 -1.1
146,555 + CA264_00660 0.79 +1.5
146,579 + CA264_00660 0.81 -0.6
146,580 - CA264_00660 0.82 -0.5
146,592 - CA264_00660 0.83 +0.2
146,592 - CA264_00660 0.83 -1.2
146,592 - CA264_00660 0.83 -1.4
146,592 - CA264_00660 0.83 -0.1
146,601 - CA264_00660 0.83 -0.6
146,624 - CA264_00660 0.86 -2.2
146,667 - CA264_00660 0.90 -0.3
146,750 + -1.3
146,756 - -0.4
146,780 + -0.2
146,780 + -1.2
146,819 - -0.7
146,834 - CA264_00665 0.11 -0.5
146,874 - CA264_00665 0.17 -0.9
146,878 - CA264_00665 0.18 -0.1
146,981 + CA264_00665 0.35 -0.4
146,981 + CA264_00665 0.35 -0.3
146,982 - CA264_00665 0.35 +1.3
146,982 - CA264_00665 0.35 -0.4
146,982 - CA264_00665 0.35 -1.4
146,982 - CA264_00665 0.35 -0.2
147,008 + CA264_00665 0.39 -0.9
147,009 - CA264_00665 0.39 +0.1
147,009 - CA264_00665 0.39 -0.4
147,041 + CA264_00665 0.45 -0.5
147,188 + CA264_00665 0.69 -1.4
147,189 - CA264_00665 0.69 +0.1
147,223 - CA264_00665 0.75 -0.5
147,343 - -0.3
147,396 + +0.6
147,397 - +1.1
147,397 - -0.5
147,448 - +0.9
147,449 + -0.9
147,449 + -0.3
147,450 - +1.8
147,450 - +0.2
147,453 + -1.1
147,453 + -0.7
147,454 - -0.0
147,478 + +0.4
147,491 + -0.1
147,492 - +0.6
147,503 + +1.6
147,504 - +0.1
147,527 + -1.6
147,527 + -0.7
147,528 - +0.1
147,529 + -0.4
147,557 + +0.3
147,558 - -0.3
147,558 - +0.4
147,558 - -0.4
147,558 - +0.4
147,559 + +0.2
147,560 - -0.7
147,560 - -0.0
147,560 - +0.4
147,573 - +0.1
147,585 + CA264_00670 0.10 +0.2
147,585 + CA264_00670 0.10 -0.7
147,585 + CA264_00670 0.10 +0.9
147,586 - CA264_00670 0.11 -0.8
147,587 + CA264_00670 0.11 -0.6
147,587 + CA264_00670 0.11 -0.2
147,588 - CA264_00670 0.12 +0.4
147,593 + CA264_00670 0.14 +2.6
147,593 + CA264_00670 0.14 -0.3
147,593 + CA264_00670 0.14 -0.1
147,594 - CA264_00670 0.14 -0.1
147,594 - CA264_00670 0.14 +1.4
147,594 - CA264_00670 0.14 -0.0
147,594 - CA264_00670 0.14 -0.2
147,594 - CA264_00670 0.14 +0.1
147,599 + CA264_00670 0.17 +0.3
147,610 + CA264_00670 0.22 -0.5
147,627 + CA264_00670 0.29 -0.3
147,657 + CA264_00670 0.43 +0.8
147,667 + CA264_00670 0.47 -0.4
147,730 - CA264_00670 0.76 +0.7
147,730 - CA264_00670 0.76 +0.0
147,732 - CA264_00670 0.77 +1.0
147,732 - CA264_00670 0.77 -0.6
147,732 - CA264_00670 0.77 -0.4
147,732 - CA264_00670 0.77 +0.3

Or see this region's nucleotide sequence