Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS17585

Experiment: D-Trehalose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS17575 and ABIE40_RS17580 are separated by 1 nucleotidesABIE40_RS17580 and ABIE40_RS17585 are separated by 87 nucleotidesABIE40_RS17585 and ABIE40_RS17590 are separated by 26 nucleotidesABIE40_RS17590 and ABIE40_RS17595 overlap by 4 nucleotides ABIE40_RS17575: ABIE40_RS17575 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 3,511,267 to 3,512,064 _RS17575 ABIE40_RS17580: ABIE40_RS17580 - gamma-glutamylcyclotransferase, at 3,512,066 to 3,512,560 _RS17580 ABIE40_RS17585: ABIE40_RS17585 - DUF2125 domain-containing protein, at 3,512,648 to 3,513,649 _RS17585 ABIE40_RS17590: ABIE40_RS17590 - prephenate/arogenate dehydrogenase family protein, at 3,513,676 to 3,514,608 _RS17590 ABIE40_RS17595: ABIE40_RS17595 - histidinol-phosphate transaminase, at 3,514,605 to 3,515,714 _RS17595 Position (kb) 3512 3513 3514Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3511.712 kb on - strand, within ABIE40_RS17575at 3511.712 kb on - strand, within ABIE40_RS17575at 3511.722 kb on + strand, within ABIE40_RS17575at 3511.723 kb on - strand, within ABIE40_RS17575at 3511.753 kb on + strand, within ABIE40_RS17575at 3511.753 kb on + strand, within ABIE40_RS17575at 3511.760 kb on - strand, within ABIE40_RS17575at 3511.855 kb on + strand, within ABIE40_RS17575at 3511.868 kb on + strand, within ABIE40_RS17575at 3511.936 kb on + strand, within ABIE40_RS17575at 3512.062 kb on + strandat 3512.063 kb on - strandat 3512.067 kb on + strandat 3512.152 kb on + strand, within ABIE40_RS17580at 3512.152 kb on + strand, within ABIE40_RS17580at 3512.152 kb on + strand, within ABIE40_RS17580at 3512.153 kb on - strand, within ABIE40_RS17580at 3512.153 kb on - strand, within ABIE40_RS17580at 3512.153 kb on - strand, within ABIE40_RS17580at 3512.163 kb on + strand, within ABIE40_RS17580at 3512.163 kb on + strand, within ABIE40_RS17580at 3512.163 kb on + strand, within ABIE40_RS17580at 3512.163 kb on + strand, within ABIE40_RS17580at 3512.163 kb on + strand, within ABIE40_RS17580at 3512.163 kb on + strand, within ABIE40_RS17580at 3512.164 kb on - strand, within ABIE40_RS17580at 3512.164 kb on - strand, within ABIE40_RS17580at 3512.164 kb on - strand, within ABIE40_RS17580at 3512.164 kb on - strand, within ABIE40_RS17580at 3512.164 kb on - strand, within ABIE40_RS17580at 3512.241 kb on + strand, within ABIE40_RS17580at 3512.242 kb on - strand, within ABIE40_RS17580at 3512.242 kb on - strand, within ABIE40_RS17580at 3512.249 kb on - strand, within ABIE40_RS17580at 3512.249 kb on - strand, within ABIE40_RS17580at 3512.268 kb on + strand, within ABIE40_RS17580at 3512.268 kb on + strand, within ABIE40_RS17580at 3512.268 kb on + strand, within ABIE40_RS17580at 3512.268 kb on + strand, within ABIE40_RS17580at 3512.269 kb on - strand, within ABIE40_RS17580at 3512.269 kb on - strand, within ABIE40_RS17580at 3512.269 kb on - strand, within ABIE40_RS17580at 3512.269 kb on - strand, within ABIE40_RS17580at 3512.269 kb on - strand, within ABIE40_RS17580at 3512.269 kb on - strand, within ABIE40_RS17580at 3512.269 kb on - strand, within ABIE40_RS17580at 3512.269 kb on - strand, within ABIE40_RS17580at 3512.269 kb on - strand, within ABIE40_RS17580at 3512.328 kb on + strand, within ABIE40_RS17580at 3512.328 kb on + strand, within ABIE40_RS17580at 3512.328 kb on + strand, within ABIE40_RS17580at 3512.329 kb on - strand, within ABIE40_RS17580at 3512.329 kb on - strand, within ABIE40_RS17580at 3512.329 kb on - strand, within ABIE40_RS17580at 3512.362 kb on - strand, within ABIE40_RS17580at 3512.506 kb on - strand, within ABIE40_RS17580at 3512.506 kb on - strand, within ABIE40_RS17580at 3512.511 kb on + strandat 3512.511 kb on + strandat 3512.512 kb on - strandat 3512.512 kb on - strandat 3512.512 kb on - strandat 3512.596 kb on + strandat 3512.597 kb on - strandat 3512.597 kb on - strandat 3512.726 kb on + strandat 3512.727 kb on - strandat 3512.727 kb on - strandat 3512.727 kb on - strandat 3512.728 kb on + strandat 3512.744 kb on + strandat 3512.745 kb on - strandat 3512.945 kb on + strand, within ABIE40_RS17585at 3512.946 kb on - strand, within ABIE40_RS17585at 3512.946 kb on - strand, within ABIE40_RS17585at 3512.946 kb on - strand, within ABIE40_RS17585at 3512.959 kb on + strand, within ABIE40_RS17585at 3513.122 kb on + strand, within ABIE40_RS17585at 3513.123 kb on - strand, within ABIE40_RS17585at 3513.123 kb on - strand, within ABIE40_RS17585at 3513.223 kb on + strand, within ABIE40_RS17585at 3513.223 kb on + strand, within ABIE40_RS17585at 3513.647 kb on + strandat 3513.648 kb on - strandat 3513.648 kb on - strandat 3513.960 kb on - strand, within ABIE40_RS17590at 3514.020 kb on - strand, within ABIE40_RS17590at 3514.020 kb on - strand, within ABIE40_RS17590at 3514.020 kb on - strand, within ABIE40_RS17590at 3514.272 kb on + strand, within ABIE40_RS17590at 3514.272 kb on + strand, within ABIE40_RS17590at 3514.273 kb on - strand, within ABIE40_RS17590at 3514.396 kb on + strand, within ABIE40_RS17590at 3514.396 kb on + strand, within ABIE40_RS17590at 3514.445 kb on + strand, within ABIE40_RS17590at 3514.545 kb on - strandat 3514.608 kb on + strandat 3514.608 kb on + strandat 3514.608 kb on + strandat 3514.608 kb on + strandat 3514.609 kb on - strandat 3514.609 kb on - strandat 3514.609 kb on - strandat 3514.613 kb on + strandat 3514.613 kb on + strandat 3514.614 kb on - strandat 3514.622 kb on + strandat 3514.623 kb on - strandat 3514.623 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Trehalose (C)
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3,511,712 - ABIE40_RS17575 0.56 -0.5
3,511,712 - ABIE40_RS17575 0.56 +0.1
3,511,722 + ABIE40_RS17575 0.57 -0.7
3,511,723 - ABIE40_RS17575 0.57 +0.8
3,511,753 + ABIE40_RS17575 0.61 -1.0
3,511,753 + ABIE40_RS17575 0.61 -0.8
3,511,760 - ABIE40_RS17575 0.62 -0.8
3,511,855 + ABIE40_RS17575 0.74 +0.7
3,511,868 + ABIE40_RS17575 0.75 -0.9
3,511,936 + ABIE40_RS17575 0.84 -0.8
3,512,062 + -1.1
3,512,063 - -0.3
3,512,067 + +0.4
3,512,152 + ABIE40_RS17580 0.17 +0.8
3,512,152 + ABIE40_RS17580 0.17 +0.9
3,512,152 + ABIE40_RS17580 0.17 +2.1
3,512,153 - ABIE40_RS17580 0.18 -0.7
3,512,153 - ABIE40_RS17580 0.18 -0.6
3,512,153 - ABIE40_RS17580 0.18 +0.1
3,512,163 + ABIE40_RS17580 0.20 -0.3
3,512,163 + ABIE40_RS17580 0.20 +0.8
3,512,163 + ABIE40_RS17580 0.20 -0.3
3,512,163 + ABIE40_RS17580 0.20 -0.5
3,512,163 + ABIE40_RS17580 0.20 -0.7
3,512,163 + ABIE40_RS17580 0.20 +4.5
3,512,164 - ABIE40_RS17580 0.20 -1.5
3,512,164 - ABIE40_RS17580 0.20 +0.2
3,512,164 - ABIE40_RS17580 0.20 -0.8
3,512,164 - ABIE40_RS17580 0.20 +0.3
3,512,164 - ABIE40_RS17580 0.20 +0.7
3,512,241 + ABIE40_RS17580 0.35 -2.7
3,512,242 - ABIE40_RS17580 0.36 -0.1
3,512,242 - ABIE40_RS17580 0.36 +0.8
3,512,249 - ABIE40_RS17580 0.37 -2.6
3,512,249 - ABIE40_RS17580 0.37 -1.0
3,512,268 + ABIE40_RS17580 0.41 +0.3
3,512,268 + ABIE40_RS17580 0.41 -0.5
3,512,268 + ABIE40_RS17580 0.41 -0.2
3,512,268 + ABIE40_RS17580 0.41 -1.1
3,512,269 - ABIE40_RS17580 0.41 +0.7
3,512,269 - ABIE40_RS17580 0.41 +1.1
3,512,269 - ABIE40_RS17580 0.41 -0.6
3,512,269 - ABIE40_RS17580 0.41 -1.1
3,512,269 - ABIE40_RS17580 0.41 -0.0
3,512,269 - ABIE40_RS17580 0.41 +0.1
3,512,269 - ABIE40_RS17580 0.41 +0.7
3,512,269 - ABIE40_RS17580 0.41 -0.1
3,512,269 - ABIE40_RS17580 0.41 +0.4
3,512,328 + ABIE40_RS17580 0.53 +1.1
3,512,328 + ABIE40_RS17580 0.53 -0.2
3,512,328 + ABIE40_RS17580 0.53 -0.3
3,512,329 - ABIE40_RS17580 0.53 +0.4
3,512,329 - ABIE40_RS17580 0.53 +2.5
3,512,329 - ABIE40_RS17580 0.53 +0.3
3,512,362 - ABIE40_RS17580 0.60 -0.7
3,512,506 - ABIE40_RS17580 0.89 -0.3
3,512,506 - ABIE40_RS17580 0.89 -0.1
3,512,511 + +0.5
3,512,511 + -1.4
3,512,512 - -1.1
3,512,512 - -0.5
3,512,512 - +2.1
3,512,596 + -0.2
3,512,597 - -0.4
3,512,597 - +0.3
3,512,726 + -1.7
3,512,727 - -1.4
3,512,727 - -1.1
3,512,727 - -2.9
3,512,728 + -1.1
3,512,744 + -1.2
3,512,745 - -3.0
3,512,945 + ABIE40_RS17585 0.30 -1.3
3,512,946 - ABIE40_RS17585 0.30 -1.0
3,512,946 - ABIE40_RS17585 0.30 -2.5
3,512,946 - ABIE40_RS17585 0.30 -1.0
3,512,959 + ABIE40_RS17585 0.31 +0.3
3,513,122 + ABIE40_RS17585 0.47 -2.9
3,513,123 - ABIE40_RS17585 0.47 -1.8
3,513,123 - ABIE40_RS17585 0.47 -1.0
3,513,223 + ABIE40_RS17585 0.57 -1.8
3,513,223 + ABIE40_RS17585 0.57 -0.3
3,513,647 + -2.0
3,513,648 - +0.3
3,513,648 - -1.4
3,513,960 - ABIE40_RS17590 0.30 -2.3
3,514,020 - ABIE40_RS17590 0.37 -1.3
3,514,020 - ABIE40_RS17590 0.37 -0.1
3,514,020 - ABIE40_RS17590 0.37 -0.8
3,514,272 + ABIE40_RS17590 0.64 -1.5
3,514,272 + ABIE40_RS17590 0.64 -2.2
3,514,273 - ABIE40_RS17590 0.64 -1.5
3,514,396 + ABIE40_RS17590 0.77 +0.5
3,514,396 + ABIE40_RS17590 0.77 -1.1
3,514,445 + ABIE40_RS17590 0.82 -1.1
3,514,545 - -0.5
3,514,608 + -2.1
3,514,608 + -1.5
3,514,608 + -2.2
3,514,608 + -2.3
3,514,609 - -2.0
3,514,609 - +0.9
3,514,609 - -1.3
3,514,613 + -1.3
3,514,613 + -0.8
3,514,614 - -0.9
3,514,622 + -1.5
3,514,623 - -0.1
3,514,623 - -0.2

Or see this region's nucleotide sequence