Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS12090

Experiment: D-Trehalose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Trehalose (C)
2,356,242	+				-4.4
2,356,242	+				-3.1
2,356,243	-				-4.1
2,356,243	-				-1.3
2,356,243	-				-2.2
2,356,243	-				-4.0
2,356,243	-				-5.0
2,356,243	-				-3.7
2,356,286	+				-1.0
2,356,286	+				-3.2
2,356,287	-				-3.7
2,356,287	-				-1.5
2,356,287	-				-3.1
2,356,287	-				-1.5
2,356,287	-				-2.8
2,356,287	-				-3.9
2,356,343	+		ABIE40_RS12085	0.14	-2.7
2,356,344	-		ABIE40_RS12085	0.14	-2.5
2,356,344	-		ABIE40_RS12085	0.14	-3.8
2,356,524	+		ABIE40_RS12085	0.32	-1.4
2,356,524	+		ABIE40_RS12085	0.32	-5.4
2,356,524	+		ABIE40_RS12085	0.32	-5.2
2,356,541	+		ABIE40_RS12085	0.34	-1.3
2,356,541	+		ABIE40_RS12085	0.34	-4.0
2,356,541	+		ABIE40_RS12085	0.34	-3.7
2,356,541	+		ABIE40_RS12085	0.34	-3.4
2,356,541	+		ABIE40_RS12085	0.34	-3.0
2,356,542	-		ABIE40_RS12085	0.34	-2.1
2,356,542	-		ABIE40_RS12085	0.34	-2.3
2,356,542	-		ABIE40_RS12085	0.34	-5.3
2,356,542	-		ABIE40_RS12085	0.34	-3.2
2,356,640	+		ABIE40_RS12085	0.44	-2.9
2,356,640	+		ABIE40_RS12085	0.44	-3.0
2,356,640	+		ABIE40_RS12085	0.44	-3.1
2,356,640	+		ABIE40_RS12085	0.44	-3.6
2,356,640	+		ABIE40_RS12085	0.44	-2.0
2,356,640	+		ABIE40_RS12085	0.44	-2.8
2,356,830	-		ABIE40_RS12085	0.62	-1.2
2,356,830	-		ABIE40_RS12085	0.62	-1.3
2,356,894	-		ABIE40_RS12085	0.69	-2.4
2,356,920	+		ABIE40_RS12085	0.71	-3.2
2,356,920	+		ABIE40_RS12085	0.71	-1.5
2,356,921	-		ABIE40_RS12085	0.72	-2.4
2,356,936	+		ABIE40_RS12085	0.73	-0.3
2,356,937	-		ABIE40_RS12085	0.73	-4.1
2,356,937	-		ABIE40_RS12085	0.73	-1.1
2,356,947	-		ABIE40_RS12085	0.74	-3.8
2,357,168	+				-1.2
2,357,169	-				-2.7
2,357,169	-				-2.5
2,357,169	-				-3.0
2,357,315	+				-3.6
2,357,315	+				-2.2
2,357,315	+				-4.1
2,357,316	-				-2.5
2,357,316	-				-0.4
2,357,316	-				-1.5
2,357,316	-				-1.7
2,357,396	+		ABIE40_RS12090	0.17	-4.1
2,357,471	+		ABIE40_RS12090	0.24	-2.2
2,357,472	-		ABIE40_RS12090	0.24	-2.9
2,357,472	-		ABIE40_RS12090	0.24	-4.5
2,357,472	-		ABIE40_RS12090	0.24	-2.8
2,357,641	+		ABIE40_RS12090	0.40	-2.0
2,357,641	+		ABIE40_RS12090	0.40	-1.8
2,357,641	+		ABIE40_RS12090	0.40	-3.3
2,357,642	-		ABIE40_RS12090	0.40	-3.2
2,357,642	-		ABIE40_RS12090	0.40	-0.6
2,357,645	+		ABIE40_RS12090	0.40	-2.3
2,357,645	+		ABIE40_RS12090	0.40	-1.4
2,357,645	+		ABIE40_RS12090	0.40	-3.4
2,357,645	+		ABIE40_RS12090	0.40	-2.7
2,357,645	+		ABIE40_RS12090	0.40	-3.5
2,357,645	+		ABIE40_RS12090	0.40	-3.7
2,357,645	+		ABIE40_RS12090	0.40	-1.0
2,357,645	+		ABIE40_RS12090	0.40	-4.7
2,357,645	+		ABIE40_RS12090	0.40	-3.0
2,357,645	+		ABIE40_RS12090	0.40	-3.6
2,357,645	+		ABIE40_RS12090	0.40	-2.4
2,357,645	+		ABIE40_RS12090	0.40	-3.4
2,357,645	+		ABIE40_RS12090	0.40	-3.6
2,357,646	-		ABIE40_RS12090	0.40	-2.9
2,357,646	-		ABIE40_RS12090	0.40	-1.9
2,357,647	+		ABIE40_RS12090	0.40	-2.9
2,357,647	+		ABIE40_RS12090	0.40	-0.1
2,357,647	+		ABIE40_RS12090	0.40	-5.2
2,357,648	-		ABIE40_RS12090	0.40	-2.1
2,357,648	-		ABIE40_RS12090	0.40	-2.1
2,357,648	-		ABIE40_RS12090	0.40	-5.0
2,357,648	-		ABIE40_RS12090	0.40	-4.8
2,357,648	-		ABIE40_RS12090	0.40	-5.0
2,357,648	-		ABIE40_RS12090	0.40	-2.6
2,357,648	-		ABIE40_RS12090	0.40	-2.6
2,357,740	+		ABIE40_RS12090	0.49	+1.3
2,357,740	+		ABIE40_RS12090	0.49	-2.9
2,357,741	-		ABIE40_RS12090	0.49	-2.3
2,357,741	-		ABIE40_RS12090	0.49	-2.0
2,357,789	+		ABIE40_RS12090	0.54	-4.5
2,357,789	+		ABIE40_RS12090	0.54	-5.9
2,357,789	+		ABIE40_RS12090	0.54	-1.9
2,357,789	+		ABIE40_RS12090	0.54	-3.2
2,357,790	-		ABIE40_RS12090	0.54	-2.3
2,357,845	+		ABIE40_RS12090	0.59	-3.2
2,357,845	+		ABIE40_RS12090	0.59	-2.5
2,357,845	+		ABIE40_RS12090	0.59	-3.5
2,357,845	+		ABIE40_RS12090	0.59	-1.7
2,357,846	-		ABIE40_RS12090	0.59	-2.4
2,357,909	+		ABIE40_RS12090	0.65	-3.2
2,357,909	+		ABIE40_RS12090	0.65	-3.5
2,357,909	+		ABIE40_RS12090	0.65	-1.7
2,357,909	+		ABIE40_RS12090	0.65	-1.3
2,357,909	+		ABIE40_RS12090	0.65	+0.0
2,357,910	-		ABIE40_RS12090	0.65	-2.3
2,357,910	-		ABIE40_RS12090	0.65	-3.0
2,357,910	-		ABIE40_RS12090	0.65	-2.5
2,357,910	-		ABIE40_RS12090	0.65	-2.6
2,357,911	+		ABIE40_RS12090	0.65	-2.1
2,357,911	+		ABIE40_RS12090	0.65	-2.6
2,357,912	-		ABIE40_RS12090	0.65	-1.9
2,357,912	-		ABIE40_RS12090	0.65	-1.7
2,357,912	-		ABIE40_RS12090	0.65	-2.2
2,358,127	+		ABIE40_RS12090	0.85	-3.9
2,358,152	+		ABIE40_RS12090	0.88	-4.7
2,358,205	+				-4.6
2,358,230	+				-2.6
2,358,230	+				-3.6
2,358,231	-				-1.0
2,358,333	+				-2.4
2,358,333	+				-3.3
2,358,334	-				-4.0
2,358,334	-				-3.2
2,358,334	-				-1.9
2,358,334	-				-3.1
2,358,334	-				-4.3
2,358,567	+		ABIE40_RS12095	0.34	-1.4
2,358,567	+		ABIE40_RS12095	0.34	-2.2
2,358,567	+		ABIE40_RS12095	0.34	-1.8
2,358,568	-		ABIE40_RS12095	0.34	+1.3
2,358,670	+		ABIE40_RS12095	0.47	-2.3
2,358,671	-		ABIE40_RS12095	0.47	-3.3
2,358,672	+		ABIE40_RS12095	0.47	-3.5
2,358,672	+		ABIE40_RS12095	0.47	-3.7
2,358,672	+		ABIE40_RS12095	0.47	-3.7
2,358,697	+		ABIE40_RS12095	0.50	-2.2
2,358,780	+		ABIE40_RS12095	0.60	-1.5
2,358,780	+		ABIE40_RS12095	0.60	-3.7
2,358,780	+		ABIE40_RS12095	0.60	-1.9
2,358,780	+		ABIE40_RS12095	0.60	-3.8
2,358,781	-		ABIE40_RS12095	0.60	-3.0
2,358,796	+		ABIE40_RS12095	0.61	-3.1
2,358,796	+		ABIE40_RS12095	0.61	-1.3
2,358,797	-		ABIE40_RS12095	0.62	-3.7
2,358,797	-		ABIE40_RS12095	0.62	-2.0
2,358,812	+		ABIE40_RS12095	0.63	-3.6
2,358,900	+		ABIE40_RS12095	0.74	-3.0
2,358,900	+		ABIE40_RS12095	0.74	-2.1
2,359,174	+				-2.3
2,359,174	+				-1.8
2,359,174	+				-2.3
2,359,174	+				-3.2
2,359,201	+				-3.1
2,359,276	+		ABIE40_RS12100	0.15	-4.0