Strain Fitness in Escherichia coli BW25113 around b3602

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmtlR and yibT are separated by 11 nucleotidesyibT and yibL are separated by 284 nucleotidesyibL and lldP are separated by 371 nucleotides b3601: mtlR - DNA-binding repressor (NCBI), at 3,773,595 to 3,774,182 mtlR b4554: yibT - hypothetical protein (NCBI), at 3,774,194 to 3,774,403 yibT b3602: yibL - hypothetical protein (NCBI), at 3,774,688 to 3,775,050 yibL b3603: lldP - (R)-lactate / (S)-lactate / glycolate:H+ symporter LldP (from data), at 3,775,422 to 3,777,077 lldP Position (kb) 3774 3775 3776Strain fitness (log2 ratio) -1 0 1at 3773.688 kb on + strand, within mtlRat 3773.688 kb on + strand, within mtlRat 3773.697 kb on + strand, within mtlRat 3773.718 kb on - strand, within mtlRat 3773.718 kb on - strand, within mtlRat 3773.810 kb on + strand, within mtlRat 3773.816 kb on - strand, within mtlRat 3773.818 kb on + strand, within mtlRat 3773.828 kb on - strand, within mtlRat 3773.828 kb on - strand, within mtlRat 3773.829 kb on + strand, within mtlRat 3773.857 kb on + strand, within mtlRat 3773.857 kb on + strand, within mtlRat 3773.928 kb on - strand, within mtlRat 3773.928 kb on - strand, within mtlRat 3774.003 kb on - strand, within mtlRat 3774.003 kb on - strand, within mtlRat 3774.007 kb on + strand, within mtlRat 3774.007 kb on + strand, within mtlRat 3774.012 kb on + strand, within mtlRat 3774.028 kb on - strand, within mtlRat 3774.028 kb on - strand, within mtlRat 3774.113 kb on - strand, within mtlRat 3774.123 kb on + strand, within mtlRat 3774.192 kb on + strandat 3774.192 kb on + strandat 3774.197 kb on + strandat 3774.197 kb on + strandat 3774.201 kb on + strandat 3774.201 kb on + strandat 3774.201 kb on + strandat 3774.201 kb on + strandat 3774.233 kb on + strand, within yibTat 3774.233 kb on + strand, within yibTat 3774.255 kb on - strand, within yibTat 3774.258 kb on - strand, within yibTat 3774.258 kb on - strand, within yibTat 3774.287 kb on - strand, within yibTat 3774.292 kb on - strand, within yibTat 3774.331 kb on - strand, within yibTat 3774.331 kb on - strand, within yibTat 3774.331 kb on - strand, within yibTat 3774.331 kb on - strand, within yibTat 3774.419 kb on - strandat 3774.424 kb on - strandat 3774.476 kb on - strandat 3774.490 kb on - strandat 3774.604 kb on - strandat 3774.622 kb on - strandat 3774.629 kb on + strandat 3774.629 kb on + strandat 3774.651 kb on - strandat 3774.651 kb on - strandat 3774.656 kb on - strandat 3774.656 kb on - strandat 3774.657 kb on - strandat 3774.732 kb on + strand, within yibLat 3774.738 kb on - strand, within yibLat 3774.738 kb on - strand, within yibLat 3774.781 kb on + strand, within yibLat 3774.858 kb on - strand, within yibLat 3774.867 kb on + strand, within yibLat 3774.898 kb on + strand, within yibLat 3774.898 kb on + strand, within yibLat 3774.938 kb on - strand, within yibLat 3774.938 kb on - strand, within yibLat 3774.944 kb on + strand, within yibLat 3774.944 kb on + strand, within yibLat 3774.973 kb on + strand, within yibLat 3774.994 kb on - strand, within yibLat 3775.062 kb on + strandat 3775.062 kb on + strandat 3775.125 kb on - strandat 3775.125 kb on - strandat 3775.130 kb on - strandat 3775.130 kb on - strandat 3775.156 kb on + strandat 3775.156 kb on + strandat 3775.183 kb on + strandat 3775.209 kb on - strandat 3775.303 kb on - strandat 3775.355 kb on - strandat 3775.355 kb on - strandat 3775.369 kb on - strandat 3775.369 kb on - strandat 3775.412 kb on - strandat 3775.412 kb on - strandat 3775.414 kb on - strandat 3775.726 kb on - strand, within lldPat 3775.726 kb on - strand, within lldPat 3775.743 kb on - strand, within lldPat 3775.805 kb on + strand, within lldPat 3775.805 kb on + strand, within lldPat 3775.905 kb on + strand, within lldPat 3775.913 kb on - strand, within lldPat 3775.913 kb on - strand, within lldPat 3775.967 kb on + strand, within lldPat 3775.980 kb on - strand, within lldPat 3775.980 kb on - strand, within lldPat 3776.042 kb on + strand, within lldPat 3776.050 kb on - strand, within lldP

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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3,773,688 + mtlR b3601 0.16 -0.2
3,773,688 + mtlR b3601 0.16 +1.0
3,773,697 + mtlR b3601 0.17 +0.4
3,773,718 - mtlR b3601 0.21 -0.8
3,773,718 - mtlR b3601 0.21 -0.1
3,773,810 + mtlR b3601 0.37 +0.0
3,773,816 - mtlR b3601 0.38 +0.7
3,773,818 + mtlR b3601 0.38 -1.3
3,773,828 - mtlR b3601 0.40 +0.4
3,773,828 - mtlR b3601 0.40 +0.5
3,773,829 + mtlR b3601 0.40 +0.3
3,773,857 + mtlR b3601 0.45 +0.1
3,773,857 + mtlR b3601 0.45 -0.8
3,773,928 - mtlR b3601 0.57 +0.5
3,773,928 - mtlR b3601 0.57 -0.5
3,774,003 - mtlR b3601 0.69 -0.6
3,774,003 - mtlR b3601 0.69 -0.8
3,774,007 + mtlR b3601 0.70 -0.2
3,774,007 + mtlR b3601 0.70 +0.4
3,774,012 + mtlR b3601 0.71 +0.7
3,774,028 - mtlR b3601 0.74 -1.1
3,774,028 - mtlR b3601 0.74 -1.0
3,774,113 - mtlR b3601 0.88 -1.0
3,774,123 + mtlR b3601 0.90 +0.2
3,774,192 + +0.3
3,774,192 + +0.4
3,774,197 + -0.5
3,774,197 + +0.8
3,774,201 + +0.0
3,774,201 + +0.5
3,774,201 + +1.0
3,774,201 + +0.4
3,774,233 + yibT b4554 0.19 +0.8
3,774,233 + yibT b4554 0.19 -1.0
3,774,255 - yibT b4554 0.29 -0.2
3,774,258 - yibT b4554 0.30 -0.7
3,774,258 - yibT b4554 0.30 +0.8
3,774,287 - yibT b4554 0.44 +1.5
3,774,292 - yibT b4554 0.47 -0.7
3,774,331 - yibT b4554 0.65 +0.9
3,774,331 - yibT b4554 0.65 +0.6
3,774,331 - yibT b4554 0.65 +1.0
3,774,331 - yibT b4554 0.65 +0.4
3,774,419 - +0.0
3,774,424 - +0.1
3,774,476 - -0.3
3,774,490 - +1.7
3,774,604 - -0.4
3,774,622 - +1.0
3,774,629 + -0.7
3,774,629 + +0.1
3,774,651 - +0.1
3,774,651 - +0.4
3,774,656 - +0.2
3,774,656 - +0.3
3,774,657 - -0.2
3,774,732 + yibL b3602 0.12 -0.2
3,774,738 - yibL b3602 0.14 -1.2
3,774,738 - yibL b3602 0.14 -0.5
3,774,781 + yibL b3602 0.26 +0.4
3,774,858 - yibL b3602 0.47 +0.1
3,774,867 + yibL b3602 0.49 -0.9
3,774,898 + yibL b3602 0.58 -1.1
3,774,898 + yibL b3602 0.58 +0.7
3,774,938 - yibL b3602 0.69 -0.3
3,774,938 - yibL b3602 0.69 +0.2
3,774,944 + yibL b3602 0.71 -0.5
3,774,944 + yibL b3602 0.71 -0.1
3,774,973 + yibL b3602 0.79 -1.7
3,774,994 - yibL b3602 0.84 -1.7
3,775,062 + -0.2
3,775,062 + +0.4
3,775,125 - -0.2
3,775,125 - -0.1
3,775,130 - +0.5
3,775,130 - -1.2
3,775,156 + +0.4
3,775,156 + -0.1
3,775,183 + +0.1
3,775,209 - +0.7
3,775,303 - -1.1
3,775,355 - -0.2
3,775,355 - +0.2
3,775,369 - +1.5
3,775,369 - +0.8
3,775,412 - +0.4
3,775,412 - -1.1
3,775,414 - -0.2
3,775,726 - lldP b3603 0.18 +0.5
3,775,726 - lldP b3603 0.18 +0.7
3,775,743 - lldP b3603 0.19 +0.1
3,775,805 + lldP b3603 0.23 +0.1
3,775,805 + lldP b3603 0.23 +0.8
3,775,905 + lldP b3603 0.29 +0.0
3,775,913 - lldP b3603 0.30 -0.5
3,775,913 - lldP b3603 0.30 +0.3
3,775,967 + lldP b3603 0.33 +0.4
3,775,980 - lldP b3603 0.34 +0.5
3,775,980 - lldP b3603 0.34 +0.9
3,776,042 + lldP b3603 0.37 -0.6
3,776,050 - lldP b3603 0.38 -0.1

Or see this region's nucleotide sequence