Strain Fitness in Escherichia coli BW25113 around b3290

Experiment: D-Sorbitol (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Sorbitol (C)
3,433,567	+	rsmB	b3289	0.26	+0.1
3,433,589	+	rsmB	b3289	0.28	+0.4
3,433,629	-	rsmB	b3289	0.31	-1.4
3,433,665	+	rsmB	b3289	0.34	+0.2
3,433,665	+	rsmB	b3289	0.34	+0.9
3,433,665	+	rsmB	b3289	0.34	+0.1
3,433,671	-	rsmB	b3289	0.34	+0.9
3,433,671	-	rsmB	b3289	0.34	-0.1
3,433,673	-	rsmB	b3289	0.34	+1.9
3,433,698	+	rsmB	b3289	0.36	+0.3
3,433,706	-	rsmB	b3289	0.37	-0.0
3,433,706	-	rsmB	b3289	0.37	-1.2
3,433,706	-	rsmB	b3289	0.37	-0.3
3,433,758	+	rsmB	b3289	0.41	+1.0
3,433,837	+	rsmB	b3289	0.47	-0.4
3,433,843	+	rsmB	b3289	0.48	-0.1
3,433,843	+	rsmB	b3289	0.48	+0.8
3,433,845	-	rsmB	b3289	0.48	+0.6
3,433,845	-	rsmB	b3289	0.48	+0.4
3,433,851	+	rsmB	b3289	0.48	+0.1
3,433,859	-	rsmB	b3289	0.49	-0.8
3,433,864	-	rsmB	b3289	0.49	+0.7
3,433,864	-	rsmB	b3289	0.49	+0.4
3,433,864	-	rsmB	b3289	0.49	-1.3
3,433,877	+	rsmB	b3289	0.50	-0.7
3,433,936	+	rsmB	b3289	0.55	-0.1
3,433,939	-	rsmB	b3289	0.55	+0.2
3,433,944	-	rsmB	b3289	0.55	+0.1
3,433,953	-	rsmB	b3289	0.56	+1.0
3,434,019	+	rsmB	b3289	0.61	+0.4
3,434,027	-	rsmB	b3289	0.62	+0.1
3,434,036	+	rsmB	b3289	0.63	-0.4
3,434,071	-	rsmB	b3289	0.65	-0.2
3,434,071	-	rsmB	b3289	0.65	+0.7
3,434,112	-	rsmB	b3289	0.68	+0.2
3,434,134	-				+1.4
3,434,141	-	rsmB	b3289	0.71	+0.2
3,434,141	-	rsmB	b3289	0.71	-1.2
3,434,147	-	rsmB	b3289	0.71	-0.6
3,434,147	-	rsmB	b3289	0.71	-0.1
3,434,150	+	rsmB	b3289	0.71	+0.1
3,434,158	-	rsmB	b3289	0.72	+0.2
3,434,333	+	rsmB	b3289	0.86	+1.7
3,434,339	-	rsmB	b3289	0.86	-0.5
3,434,350	-	rsmB	b3289	0.87	+0.7
3,434,350	-	rsmB	b3289	0.87	-1.4
3,434,352	+	rsmB	b3289	0.87	+0.4
3,434,357	+	rsmB	b3289	0.87	+0.3
3,434,366	+	rsmB	b3289	0.88	-1.3
3,434,370	+	rsmB	b3289	0.88	+0.1
3,434,402	+				-0.4
3,434,430	+				-0.2
3,434,430	+				-0.1
3,434,432	+				-0.0
3,434,432	+				-0.3
3,434,433	+				+0.5
3,434,433	+				-0.4
3,434,471	+				-0.6
3,434,477	-				-0.8
3,434,477	-				-0.2
3,434,504	-				+1.7
3,434,504	-				-0.7
3,434,673	+				-0.9
3,434,812	-	trkA	b3290	0.20	-0.3
3,434,850	+	trkA	b3290	0.23	+0.1
3,434,913	-	trkA	b3290	0.27	+0.1
3,434,918	-	trkA	b3290	0.27	-1.9
3,434,955	-	trkA	b3290	0.30	-0.3
3,434,955	-	trkA	b3290	0.30	-1.2
3,435,006	-	trkA	b3290	0.34	+0.7
3,435,049	+	trkA	b3290	0.37	-1.2
3,435,070	-	trkA	b3290	0.38	+1.7
3,435,185	+	trkA	b3290	0.47	-0.9
3,435,275	+	trkA	b3290	0.53	-1.8
3,435,314	-	trkA	b3290	0.56	+0.1
3,435,416	+	trkA	b3290	0.64	-0.2
3,435,474	-	trkA	b3290	0.68	-0.3
3,435,476	-	trkA	b3290	0.68	-0.9
3,435,613	+	trkA	b3290	0.78	-1.2
3,435,699	+	trkA	b3290	0.84	-1.7
3,435,809	+				-1.5
3,435,840	+				+0.7
3,435,840	+				-1.2
3,435,842	+				-1.7
3,435,877	+				-1.7
3,435,889	+				-0.2
3,435,889	+				-0.9
3,435,889	+				-2.3
3,435,889	+				-2.6
3,435,903	+				+0.5
3,436,020	-				+0.2
3,436,020	-				-0.6
3,436,020	-				-0.0
3,436,026	+				+0.4
3,436,027	+				-0.7
3,436,027	+				+0.1
3,436,037	-				-0.2
3,436,037	-				-0.5
3,436,045	-				-0.2
3,436,047	-				+0.4
3,436,061	-				+0.2
3,436,071	+				+0.7
3,436,071	+				+0.5
3,436,081	+				+0.2
3,436,081	+				-0.4
3,436,081	+				-0.1
3,436,081	+				+0.7
3,436,106	-	mscL	b3291	0.15	+0.2
3,436,114	+	mscL	b3291	0.17	+0.2
3,436,146	+	mscL	b3291	0.24	-0.6
3,436,165	+	mscL	b3291	0.29	+0.3
3,436,165	+	mscL	b3291	0.29	+0.5
3,436,175	+	mscL	b3291	0.31	-0.3
3,436,211	-	mscL	b3291	0.40	-1.0
3,436,211	-	mscL	b3291	0.40	-0.0
3,436,218	+	mscL	b3291	0.42	-0.1
3,436,220	+	mscL	b3291	0.42	+0.3
3,436,243	-	mscL	b3291	0.48	+0.2
3,436,245	-	mscL	b3291	0.48	-0.3
3,436,245	-	mscL	b3291	0.48	+0.7
3,436,251	-	mscL	b3291	0.50	-0.1
3,436,256	+	mscL	b3291	0.51	+0.5
3,436,256	-	mscL	b3291	0.51	+0.4
3,436,259	-	mscL	b3291	0.52	+0.5
3,436,261	-	mscL	b3291	0.52	+0.7
3,436,261	-	mscL	b3291	0.52	+0.3
3,436,264	+	mscL	b3291	0.53	-0.0
3,436,264	-	mscL	b3291	0.53	-0.2
3,436,264	-	mscL	b3291	0.53	+0.7
3,436,264	-	mscL	b3291	0.53	+1.0
3,436,329	+	mscL	b3291	0.69	+0.7
3,436,377	+	mscL	b3291	0.81	+0.5
3,436,377	+	mscL	b3291	0.81	-0.2
3,436,380	+	mscL	b3291	0.81	+0.6
3,436,380	+	mscL	b3291	0.81	+0.5
3,436,380	+	mscL	b3291	0.81	-0.6
3,436,380	+	mscL	b3291	0.81	+0.7
3,436,380	+	mscL	b3291	0.81	+0.7
3,436,398	-	mscL	b3291	0.86	+0.1
3,436,429	+				+0.6
3,436,457	-				-0.5
3,436,458	-				-0.7
3,436,460	-				-0.7
3,436,476	+	yhdL	b4550	0.11	-0.5
3,436,482	+	yhdL	b4550	0.13	+0.5
3,436,482	+	yhdL	b4550	0.13	+0.1
3,436,524	-	yhdL	b4550	0.32	+0.7
3,436,524	-	yhdL	b4550	0.32	+0.2
3,436,528	-	yhdL	b4550	0.34	+0.4
3,436,528	-	yhdL	b4550	0.34	+0.1
3,436,551	+	yhdL	b4550	0.45	-1.5
3,436,551	+	yhdL	b4550	0.45	-1.0
3,436,559	-	yhdL	b4550	0.48	+0.0
3,436,617	-	yhdL	b4550	0.75	+0.6
3,436,636	-	yhdL	b4550	0.84	+0.4
3,436,642	-	yhdL	b4550	0.86	+0.8
3,436,644	+	yhdL	b4550	0.87	+0.3
3,436,659	+				+0.4
3,436,748	+				+0.4
3,436,757	+				-1.3
3,436,767	+				-1.3
3,436,796	-	zntR	b3292	0.16	-2.0
3,436,803	+	zntR	b3292	0.18	-0.3
3,436,811	-	zntR	b3292	0.20	-1.7
3,436,811	-	zntR	b3292	0.20	-2.0
3,436,840	+	zntR	b3292	0.27	-1.9
3,436,840	+	zntR	b3292	0.27	-1.2
3,436,848	+	zntR	b3292	0.28	-1.8
3,436,889	+	zntR	b3292	0.38	-0.9
3,436,889	+	zntR	b3292	0.38	-0.4