Strain Fitness in Pseudomonas sp. RS175 around PFR28_00431

Experiment: D(+)-Glucuronic carbon 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFR28_00430 and PFR28_00431 are separated by 480 nucleotidesPFR28_00431 and PFR28_00432 are separated by 670 nucleotides PFR28_00430: PFR28_00430 - IS110 family transposase ISPfl1, at 473,157 to 474,179 _00430 PFR28_00431: PFR28_00431 - HTH-type transcriptional regulator PrtR, at 474,660 to 475,394 _00431 PFR28_00432: PFR28_00432 - hypothetical protein, at 476,065 to 476,709 _00432 Position (kb) 474 475 476Strain fitness (log2 ratio) -2 -1 0 1 2at 473.945 kb on - strand, within PFR28_00430at 474.301 kb on + strandat 474.301 kb on + strandat 474.302 kb on - strandat 474.302 kb on - strandat 474.302 kb on - strandat 474.302 kb on - strandat 474.302 kb on - strandat 474.302 kb on - strandat 474.351 kb on - strandat 474.373 kb on + strandat 474.374 kb on - strandat 474.374 kb on - strandat 474.439 kb on + strandat 474.449 kb on + strandat 474.449 kb on + strandat 474.449 kb on + strandat 474.449 kb on + strandat 474.449 kb on + strandat 474.449 kb on + strandat 474.449 kb on + strandat 474.450 kb on - strandat 474.450 kb on - strandat 474.450 kb on - strandat 474.450 kb on - strandat 474.450 kb on - strandat 474.466 kb on + strandat 474.466 kb on + strandat 474.467 kb on - strandat 474.467 kb on - strandat 474.467 kb on - strandat 474.467 kb on - strandat 474.467 kb on - strandat 474.467 kb on - strandat 474.467 kb on - strandat 474.467 kb on - strandat 474.503 kb on - strandat 474.516 kb on + strandat 474.521 kb on + strandat 474.546 kb on + strandat 474.548 kb on + strandat 474.548 kb on + strandat 474.548 kb on + strandat 474.548 kb on + strandat 474.548 kb on + strandat 474.548 kb on + strandat 474.549 kb on - strandat 474.549 kb on - strandat 474.549 kb on - strandat 474.549 kb on - strandat 474.571 kb on - strandat 474.571 kb on - strandat 474.607 kb on + strandat 474.608 kb on - strandat 474.610 kb on - strandat 475.411 kb on + strandat 475.411 kb on + strandat 475.411 kb on + strandat 475.412 kb on - strandat 475.412 kb on - strandat 475.412 kb on - strandat 475.412 kb on - strandat 475.412 kb on - strandat 475.465 kb on + strandat 475.598 kb on - strandat 475.598 kb on - strandat 476.020 kb on - strandat 476.118 kb on - strandat 476.139 kb on + strand, within PFR28_00432at 476.173 kb on + strand, within PFR28_00432at 476.173 kb on + strand, within PFR28_00432at 476.173 kb on + strand, within PFR28_00432at 476.173 kb on + strand, within PFR28_00432at 476.173 kb on + strand, within PFR28_00432at 476.173 kb on + strand, within PFR28_00432at 476.173 kb on + strand, within PFR28_00432at 476.174 kb on - strand, within PFR28_00432at 476.174 kb on - strand, within PFR28_00432at 476.174 kb on - strand, within PFR28_00432at 476.174 kb on - strand, within PFR28_00432at 476.174 kb on - strand, within PFR28_00432at 476.174 kb on - strand, within PFR28_00432at 476.174 kb on - strand, within PFR28_00432at 476.174 kb on - strand, within PFR28_00432at 476.174 kb on - strand, within PFR28_00432at 476.254 kb on + strand, within PFR28_00432at 476.254 kb on + strand, within PFR28_00432at 476.254 kb on + strand, within PFR28_00432at 476.254 kb on + strand, within PFR28_00432at 476.254 kb on + strand, within PFR28_00432at 476.255 kb on - strand, within PFR28_00432at 476.255 kb on - strand, within PFR28_00432at 476.255 kb on - strand, within PFR28_00432at 476.255 kb on - strand, within PFR28_00432at 476.255 kb on - strand, within PFR28_00432at 476.255 kb on - strand, within PFR28_00432at 476.255 kb on - strand, within PFR28_00432at 476.255 kb on - strand, within PFR28_00432at 476.269 kb on - strand, within PFR28_00432at 476.289 kb on + strand, within PFR28_00432at 476.290 kb on - strand, within PFR28_00432at 476.295 kb on + strand, within PFR28_00432at 476.343 kb on + strand, within PFR28_00432at 476.368 kb on - strand, within PFR28_00432

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D(+)-Glucuronic carbon 10 mM
remove
473,945 - PFR28_00430 0.77 -0.0
474,301 + +0.1
474,301 + +0.5
474,302 - -0.8
474,302 - -0.4
474,302 - -0.7
474,302 - -0.9
474,302 - -0.1
474,302 - +0.9
474,351 - +0.0
474,373 + +1.3
474,374 - -0.3
474,374 - -0.2
474,439 + +0.8
474,449 + -0.4
474,449 + -0.3
474,449 + +0.6
474,449 + -0.5
474,449 + -0.1
474,449 + +0.2
474,449 + -0.8
474,450 - +0.8
474,450 - -1.0
474,450 - +0.3
474,450 - +0.1
474,450 - -2.5
474,466 + -0.7
474,466 + +0.7
474,467 - -0.5
474,467 - -0.8
474,467 - +1.3
474,467 - -0.1
474,467 - +0.4
474,467 - +0.3
474,467 - +0.2
474,467 - -0.7
474,503 - +0.2
474,516 + +1.1
474,521 + +1.2
474,546 + -0.0
474,548 + -0.3
474,548 + +1.4
474,548 + +0.0
474,548 + +0.1
474,548 + -0.4
474,548 + +0.4
474,549 - -1.3
474,549 - -0.8
474,549 - +0.5
474,549 - +0.0
474,571 - -0.1
474,571 - +0.7
474,607 + -0.7
474,608 - -0.0
474,610 - -0.3
475,411 + +1.4
475,411 + +1.0
475,411 + +0.4
475,412 - -0.3
475,412 - -0.8
475,412 - -0.1
475,412 - +2.3
475,412 - -0.2
475,465 + -2.4
475,598 - -1.3
475,598 - -0.7
476,020 - -1.8
476,118 - -0.3
476,139 + PFR28_00432 0.11 -0.2
476,173 + PFR28_00432 0.17 -1.0
476,173 + PFR28_00432 0.17 +0.6
476,173 + PFR28_00432 0.17 +0.1
476,173 + PFR28_00432 0.17 -0.4
476,173 + PFR28_00432 0.17 -0.8
476,173 + PFR28_00432 0.17 -0.6
476,173 + PFR28_00432 0.17 +0.7
476,174 - PFR28_00432 0.17 +1.2
476,174 - PFR28_00432 0.17 +1.3
476,174 - PFR28_00432 0.17 +0.2
476,174 - PFR28_00432 0.17 -0.3
476,174 - PFR28_00432 0.17 +0.2
476,174 - PFR28_00432 0.17 -0.2
476,174 - PFR28_00432 0.17 -2.2
476,174 - PFR28_00432 0.17 +2.7
476,174 - PFR28_00432 0.17 -1.0
476,254 + PFR28_00432 0.29 +1.0
476,254 + PFR28_00432 0.29 +0.0
476,254 + PFR28_00432 0.29 +0.6
476,254 + PFR28_00432 0.29 -0.0
476,254 + PFR28_00432 0.29 -0.3
476,255 - PFR28_00432 0.29 +0.5
476,255 - PFR28_00432 0.29 -0.9
476,255 - PFR28_00432 0.29 -0.4
476,255 - PFR28_00432 0.29 -1.3
476,255 - PFR28_00432 0.29 -1.8
476,255 - PFR28_00432 0.29 +0.1
476,255 - PFR28_00432 0.29 +1.0
476,255 - PFR28_00432 0.29 +0.0
476,269 - PFR28_00432 0.32 -0.0
476,289 + PFR28_00432 0.35 -1.3
476,290 - PFR28_00432 0.35 -1.6
476,295 + PFR28_00432 0.36 -0.3
476,343 + PFR28_00432 0.43 -1.1
476,368 - PFR28_00432 0.47 -0.1

Or see this region's nucleotide sequence