Strain Fitness in Serratia liquefaciens MT49 around IAI46_25245

Experiment: copper (II) chloride 15 uM, aerobic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	copper (II) chloride 15 uM, aerobic
5,389,089	+		IAI46_25240	0.37	+0.3
5,389,090	-		IAI46_25240	0.37	-0.5
5,389,090	-		IAI46_25240	0.37	+0.2
5,389,091	+		IAI46_25240	0.37	+0.1
5,389,091	+		IAI46_25240	0.37	-0.4
5,389,091	+		IAI46_25240	0.37	+0.3
5,389,091	+		IAI46_25240	0.37	+0.3
5,389,091	+		IAI46_25240	0.37	-0.6
5,389,091	+		IAI46_25240	0.37	+0.3
5,389,091	+		IAI46_25240	0.37	+0.1
5,389,091	+		IAI46_25240	0.37	+1.3
5,389,091	+		IAI46_25240	0.37	-0.1
5,389,092	-		IAI46_25240	0.37	-0.4
5,389,092	-		IAI46_25240	0.37	-0.7
5,389,111	-		IAI46_25240	0.38	+0.2
5,389,111	-		IAI46_25240	0.38	+0.4
5,389,114	+		IAI46_25240	0.39	+1.0
5,389,114	+		IAI46_25240	0.39	+0.4
5,389,114	+		IAI46_25240	0.39	-0.9
5,389,115	-		IAI46_25240	0.39	+0.7
5,389,115	-		IAI46_25240	0.39	-1.0
5,389,115	-		IAI46_25240	0.39	+1.3
5,389,115	-		IAI46_25240	0.39	-0.2
5,389,115	-		IAI46_25240	0.39	-0.1
5,389,119	+		IAI46_25240	0.39	+0.2
5,389,119	+		IAI46_25240	0.39	-0.2
5,389,119	+		IAI46_25240	0.39	+0.2
5,389,119	+		IAI46_25240	0.39	+0.4
5,389,119	+		IAI46_25240	0.39	-0.2
5,389,120	-		IAI46_25240	0.39	+0.0
5,389,120	-		IAI46_25240	0.39	+0.5
5,389,120	-		IAI46_25240	0.39	-0.6
5,389,128	+		IAI46_25240	0.40	+0.6
5,389,128	+		IAI46_25240	0.40	-0.3
5,389,129	-		IAI46_25240	0.40	-0.6
5,389,129	-		IAI46_25240	0.40	-0.7
5,389,129	-		IAI46_25240	0.40	+1.1
5,389,131	+		IAI46_25240	0.40	-1.1
5,389,131	+		IAI46_25240	0.40	+0.4
5,389,131	+		IAI46_25240	0.40	+0.3
5,389,132	-		IAI46_25240	0.40	+0.2
5,389,132	-		IAI46_25240	0.40	-1.6
5,389,132	-		IAI46_25240	0.40	+1.7
5,389,192	-		IAI46_25240	0.45	+0.3
5,389,209	-		IAI46_25240	0.46	-0.1
5,389,223	+		IAI46_25240	0.47	+0.3
5,389,224	-		IAI46_25240	0.47	-0.4
5,389,224	-		IAI46_25240	0.47	-0.3
5,389,392	+		IAI46_25240	0.60	-0.2
5,389,488	+		IAI46_25240	0.67	+0.2
5,389,489	-		IAI46_25240	0.67	+0.1
5,389,489	-		IAI46_25240	0.67	+0.1
5,389,489	-		IAI46_25240	0.67	-0.3
5,389,522	+		IAI46_25240	0.70	+0.2
5,389,523	-		IAI46_25240	0.70	+0.2
5,389,591	+		IAI46_25240	0.75	-0.5
5,389,591	+		IAI46_25240	0.75	+0.2
5,389,591	+		IAI46_25240	0.75	+1.1
5,389,591	+		IAI46_25240	0.75	+1.0
5,389,592	-		IAI46_25240	0.75	+1.0
5,389,596	+		IAI46_25240	0.75	-0.7
5,389,597	-		IAI46_25240	0.75	-0.4
5,389,599	+		IAI46_25240	0.75	-0.1
5,389,600	-		IAI46_25240	0.76	+0.1
5,389,616	+		IAI46_25240	0.77	+0.1
5,389,694	+		IAI46_25240	0.83	-0.4
5,389,694	+		IAI46_25240	0.83	-0.6
5,389,754	+		IAI46_25240	0.87	+1.0
5,389,754	+		IAI46_25240	0.87	+1.3
5,389,755	-		IAI46_25240	0.87	-0.2
5,389,755	-		IAI46_25240	0.87	-0.4
5,389,755	-		IAI46_25240	0.87	-0.3
5,389,755	-		IAI46_25240	0.87	-2.3
5,389,755	-		IAI46_25240	0.87	-0.3
5,389,764	+		IAI46_25240	0.88	-0.3
5,389,764	+		IAI46_25240	0.88	+0.2
5,389,764	+		IAI46_25240	0.88	-0.1
5,389,765	-		IAI46_25240	0.88	-1.2
5,389,765	-		IAI46_25240	0.88	-0.1
5,389,767	-		IAI46_25240	0.88	-0.5
5,389,829	+				+0.1
5,389,829	+				+0.2
5,389,851	-				-1.3
5,389,851	-				-0.4
5,389,954	+				+0.2
5,389,954	+				+0.9
5,389,955	-				+0.9
5,389,955	-				+0.3
5,389,960	+				+0.2
5,389,960	+				-0.3
5,389,961	-				-0.2
5,390,064	+				+0.1
5,390,064	+				+1.3
5,390,065	-				-0.6
5,390,065	-				+0.7
5,390,153	+		IAI46_25245	0.11	+1.2
5,390,348	-		IAI46_25245	0.36	+0.3
5,390,376	+		IAI46_25245	0.39	+0.4
5,390,376	+		IAI46_25245	0.39	-0.3
5,390,376	+		IAI46_25245	0.39	+0.3
5,390,377	-		IAI46_25245	0.39	-0.7
5,390,377	-		IAI46_25245	0.39	+0.7
5,390,377	-		IAI46_25245	0.39	+0.8
5,390,377	-		IAI46_25245	0.39	+0.0
5,390,412	+		IAI46_25245	0.44	-0.6
5,390,453	-		IAI46_25245	0.49	-0.2
5,390,453	-		IAI46_25245	0.49	+0.1
5,390,468	-		IAI46_25245	0.51	+0.2
5,390,487	+		IAI46_25245	0.53	-0.9
5,390,487	+		IAI46_25245	0.53	-0.4
5,390,488	-		IAI46_25245	0.53	+0.2
5,390,488	-		IAI46_25245	0.53	+0.1
5,390,488	-		IAI46_25245	0.53	+0.5
5,390,509	-		IAI46_25245	0.56	+0.1
5,390,509	-		IAI46_25245	0.56	+1.6
5,390,556	-		IAI46_25245	0.62	-1.9
5,390,556	-		IAI46_25245	0.62	+0.6
5,390,572	-		IAI46_25245	0.64	+0.1
5,390,572	-		IAI46_25245	0.64	-0.4
5,390,602	+		IAI46_25245	0.67	+0.6
5,390,602	+		IAI46_25245	0.67	+0.1
5,390,603	-		IAI46_25245	0.67	-0.7
5,390,603	-		IAI46_25245	0.67	+0.5
5,390,649	+		IAI46_25245	0.73	-0.0
5,390,650	-		IAI46_25245	0.73	-0.1
5,390,650	-		IAI46_25245	0.73	+0.2
5,390,693	+		IAI46_25245	0.79	+0.6
5,390,694	-		IAI46_25245	0.79	+0.4
5,390,747	+		IAI46_25245	0.85	+0.4
5,390,747	+		IAI46_25245	0.85	+0.5
5,390,784	-				+0.1
5,390,784	-				+1.0
5,390,856	-				-0.1
5,390,856	-				+0.0
5,390,856	-				+0.2
5,390,901	+				+0.0
5,390,915	+				-0.3
5,390,992	+				-0.0
5,390,992	+				-0.6
5,390,993	-				-0.0
5,390,993	-				+0.5
5,391,004	+				-1.3
5,391,005	-				-0.1
5,391,019	+				-0.6
5,391,019	+				+0.1
5,391,019	+				+0.5
5,391,020	-				-0.2
5,391,239	+		IAI46_25250	0.16	-0.2
5,391,240	-		IAI46_25250	0.16	+0.0
5,391,240	-		IAI46_25250	0.16	+1.6
5,391,257	+		IAI46_25250	0.18	-0.7
5,391,258	-		IAI46_25250	0.18	+1.3
5,391,258	-		IAI46_25250	0.18	+1.9
5,391,258	-		IAI46_25250	0.18	+0.0
5,391,290	+		IAI46_25250	0.20	-1.3
5,391,385	-		IAI46_25250	0.27	-0.6
5,391,385	-		IAI46_25250	0.27	+0.3
5,391,387	+		IAI46_25250	0.27	+0.3
5,391,423	-		IAI46_25250	0.30	-0.1
5,391,480	-		IAI46_25250	0.34	-1.3
5,391,608	-		IAI46_25250	0.43	+0.3
5,391,609	-		IAI46_25250	0.43	+1.0
5,391,774	+		IAI46_25250	0.55	+1.9
5,391,822	-		IAI46_25250	0.59	-1.6