Experiment: copper (II) chloride 15 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_24740 and IAI46_24745 are separated by 2 nucleotides IAI46_24745 and IAI46_24750 overlap by 4 nucleotides IAI46_24750 and IAI46_24755 are separated by 28 nucleotides
IAI46_24740: IAI46_24740 - ADP-heptose--LPS heptosyltransferase RfaF, at 5,280,630 to 5,281,676
_24740
IAI46_24745: IAI46_24745 - lipopolysaccharide heptosyltransferase RfaC, at 5,281,679 to 5,282,644
_24745
IAI46_24750: IAI46_24750 - glycosyltransferase, at 5,282,641 to 5,283,804
_24750
IAI46_24755: IAI46_24755 - O-antigen ligase family protein, at 5,283,833 to 5,285,071
_24755
Position (kb) 5282
5283
5284 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5281.654 kb on + strand at 5281.654 kb on + strand at 5281.674 kb on + strand at 5281.674 kb on + strand at 5282.635 kb on + strand at 5282.636 kb on - strand at 5282.705 kb on - strand at 5282.707 kb on - strand at 5282.707 kb on - strand at 5282.730 kb on + strand at 5282.751 kb on + strand at 5282.966 kb on - strand, within IAI46_24750 at 5283.399 kb on + strand, within IAI46_24750 at 5283.399 kb on + strand, within IAI46_24750 at 5283.399 kb on + strand, within IAI46_24750 at 5283.399 kb on + strand, within IAI46_24750 at 5283.399 kb on + strand, within IAI46_24750 at 5283.399 kb on + strand, within IAI46_24750 at 5283.400 kb on - strand, within IAI46_24750 at 5283.400 kb on - strand, within IAI46_24750 at 5283.400 kb on - strand, within IAI46_24750 at 5283.400 kb on - strand, within IAI46_24750 at 5283.400 kb on - strand, within IAI46_24750 at 5283.400 kb on - strand, within IAI46_24750 at 5283.403 kb on + strand, within IAI46_24750 at 5283.403 kb on + strand, within IAI46_24750 at 5283.403 kb on + strand, within IAI46_24750 at 5283.403 kb on + strand, within IAI46_24750 at 5283.404 kb on - strand, within IAI46_24750 at 5283.404 kb on - strand, within IAI46_24750 at 5283.404 kb on - strand, within IAI46_24750 at 5283.404 kb on - strand, within IAI46_24750 at 5283.404 kb on - strand, within IAI46_24750 at 5283.404 kb on - strand, within IAI46_24750 at 5283.412 kb on - strand, within IAI46_24750 at 5283.437 kb on + strand, within IAI46_24750 at 5283.476 kb on + strand, within IAI46_24750 at 5283.476 kb on + strand, within IAI46_24750 at 5283.607 kb on + strand, within IAI46_24750 at 5283.700 kb on + strand at 5283.708 kb on + strand at 5283.709 kb on - strand at 5283.709 kb on - strand at 5283.751 kb on + strand at 5283.752 kb on - strand at 5283.756 kb on + strand at 5283.756 kb on + strand at 5283.796 kb on - strand at 5283.796 kb on - strand at 5283.796 kb on - strand at 5283.802 kb on + strand at 5283.802 kb on + strand at 5283.802 kb on + strand at 5283.803 kb on - strand at 5283.803 kb on - strand at 5283.808 kb on + strand at 5283.808 kb on + strand at 5283.808 kb on + strand at 5283.809 kb on - strand at 5283.809 kb on - strand at 5283.840 kb on + strand at 5283.840 kb on + strand at 5283.841 kb on - strand at 5283.865 kb on + strand at 5283.875 kb on + strand at 5283.876 kb on - strand at 5283.876 kb on - strand at 5283.884 kb on + strand at 5283.885 kb on - strand at 5283.910 kb on + strand at 5283.910 kb on + strand at 5283.910 kb on + strand at 5283.911 kb on - strand at 5283.911 kb on - strand at 5283.913 kb on + strand at 5283.914 kb on - strand at 5283.962 kb on + strand, within IAI46_24755 at 5283.962 kb on + strand, within IAI46_24755 at 5283.963 kb on - strand, within IAI46_24755 at 5283.963 kb on - strand, within IAI46_24755 at 5283.964 kb on + strand, within IAI46_24755 at 5283.965 kb on - strand, within IAI46_24755 at 5283.987 kb on + strand, within IAI46_24755 at 5284.001 kb on + strand, within IAI46_24755 at 5284.007 kb on - strand, within IAI46_24755 at 5284.024 kb on + strand, within IAI46_24755 at 5284.085 kb on - strand, within IAI46_24755 at 5284.085 kb on - strand, within IAI46_24755 at 5284.100 kb on + strand, within IAI46_24755 at 5284.100 kb on + strand, within IAI46_24755 at 5284.101 kb on - strand, within IAI46_24755 at 5284.108 kb on + strand, within IAI46_24755 at 5284.121 kb on + strand, within IAI46_24755 at 5284.121 kb on + strand, within IAI46_24755 at 5284.121 kb on + strand, within IAI46_24755 at 5284.121 kb on + strand, within IAI46_24755 at 5284.121 kb on + strand, within IAI46_24755 at 5284.122 kb on - strand, within IAI46_24755 at 5284.122 kb on - strand, within IAI46_24755 at 5284.122 kb on - strand, within IAI46_24755 at 5284.122 kb on - strand, within IAI46_24755 at 5284.122 kb on - strand, within IAI46_24755 at 5284.177 kb on - strand, within IAI46_24755 at 5284.207 kb on + strand, within IAI46_24755 at 5284.207 kb on + strand, within IAI46_24755 at 5284.257 kb on - strand, within IAI46_24755 at 5284.288 kb on - strand, within IAI46_24755 at 5284.295 kb on - strand, within IAI46_24755 at 5284.309 kb on + strand, within IAI46_24755 at 5284.323 kb on - strand, within IAI46_24755 at 5284.382 kb on + strand, within IAI46_24755 at 5284.397 kb on + strand, within IAI46_24755 at 5284.397 kb on + strand, within IAI46_24755 at 5284.398 kb on - strand, within IAI46_24755 at 5284.399 kb on + strand, within IAI46_24755 at 5284.399 kb on + strand, within IAI46_24755 at 5284.400 kb on - strand, within IAI46_24755 at 5284.422 kb on + strand, within IAI46_24755 at 5284.492 kb on - strand, within IAI46_24755 at 5284.539 kb on + strand, within IAI46_24755 at 5284.539 kb on + strand, within IAI46_24755 at 5284.540 kb on - strand, within IAI46_24755 at 5284.548 kb on + strand, within IAI46_24755 at 5284.554 kb on + strand, within IAI46_24755 at 5284.583 kb on - strand, within IAI46_24755 at 5284.583 kb on - strand, within IAI46_24755 at 5284.604 kb on - strand, within IAI46_24755 at 5284.664 kb on - strand, within IAI46_24755 at 5284.686 kb on + strand, within IAI46_24755 at 5284.759 kb on + strand, within IAI46_24755 at 5284.759 kb on + strand, within IAI46_24755 at 5284.759 kb on + strand, within IAI46_24755 at 5284.760 kb on - strand, within IAI46_24755 at 5284.761 kb on + strand, within IAI46_24755 at 5284.761 kb on + strand, within IAI46_24755 at 5284.761 kb on + strand, within IAI46_24755 at 5284.784 kb on + strand, within IAI46_24755 at 5284.785 kb on - strand, within IAI46_24755 at 5284.791 kb on + strand, within IAI46_24755 at 5284.791 kb on + strand, within IAI46_24755 at 5284.792 kb on - strand, within IAI46_24755 at 5284.792 kb on - strand, within IAI46_24755 at 5284.799 kb on + strand, within IAI46_24755 at 5284.799 kb on + strand, within IAI46_24755 at 5284.799 kb on + strand, within IAI46_24755 at 5284.799 kb on + strand, within IAI46_24755 at 5284.800 kb on - strand, within IAI46_24755 at 5284.801 kb on + strand, within IAI46_24755 at 5284.801 kb on + strand, within IAI46_24755 at 5284.802 kb on - strand, within IAI46_24755 at 5284.802 kb on - strand, within IAI46_24755 at 5284.802 kb on - strand, within IAI46_24755 at 5284.804 kb on - strand, within IAI46_24755
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic remove 5,281,654 + -0.9 5,281,654 + -0.4 5,281,674 + +0.5 5,281,674 + -1.1 5,282,635 + +0.1 5,282,636 - +1.4 5,282,705 - +0.2 5,282,707 - +1.9 5,282,707 - -0.2 5,282,730 + +0.0 5,282,751 + +0.6 5,282,966 - IAI46_24750 0.28 +0.6 5,283,399 + IAI46_24750 0.65 +0.0 5,283,399 + IAI46_24750 0.65 -0.2 5,283,399 + IAI46_24750 0.65 -0.2 5,283,399 + IAI46_24750 0.65 +1.0 5,283,399 + IAI46_24750 0.65 +0.6 5,283,399 + IAI46_24750 0.65 +1.9 5,283,400 - IAI46_24750 0.65 -0.8 5,283,400 - IAI46_24750 0.65 -1.2 5,283,400 - IAI46_24750 0.65 +0.3 5,283,400 - IAI46_24750 0.65 -0.2 5,283,400 - IAI46_24750 0.65 -0.8 5,283,400 - IAI46_24750 0.65 +0.3 5,283,403 + IAI46_24750 0.65 +0.6 5,283,403 + IAI46_24750 0.65 -2.3 5,283,403 + IAI46_24750 0.65 +0.3 5,283,403 + IAI46_24750 0.65 +0.0 5,283,404 - IAI46_24750 0.66 -0.4 5,283,404 - IAI46_24750 0.66 +0.8 5,283,404 - IAI46_24750 0.66 -0.4 5,283,404 - IAI46_24750 0.66 +0.3 5,283,404 - IAI46_24750 0.66 +0.4 5,283,404 - IAI46_24750 0.66 +0.0 5,283,412 - IAI46_24750 0.66 +1.6 5,283,437 + IAI46_24750 0.68 +0.6 5,283,476 + IAI46_24750 0.72 -0.4 5,283,476 + IAI46_24750 0.72 +0.3 5,283,607 + IAI46_24750 0.83 -0.7 5,283,700 + +0.1 5,283,708 + -0.8 5,283,709 - +1.6 5,283,709 - +0.2 5,283,751 + +0.5 5,283,752 - -1.6 5,283,756 + -0.3 5,283,756 + -0.1 5,283,796 - -0.2 5,283,796 - -0.4 5,283,796 - +0.9 5,283,802 + +0.3 5,283,802 + +0.1 5,283,802 + +0.4 5,283,803 - -1.6 5,283,803 - -1.7 5,283,808 + +1.1 5,283,808 + -0.9 5,283,808 + +0.4 5,283,809 - -1.7 5,283,809 - -1.1 5,283,840 + -0.5 5,283,840 + -0.3 5,283,841 - +1.6 5,283,865 + -0.7 5,283,875 + +0.0 5,283,876 - -0.2 5,283,876 - -0.7 5,283,884 + +0.4 5,283,885 - +0.6 5,283,910 + -0.2 5,283,910 + -1.8 5,283,910 + -1.5 5,283,911 - -0.7 5,283,911 - -1.6 5,283,913 + -0.7 5,283,914 - -1.6 5,283,962 + IAI46_24755 0.10 -0.6 5,283,962 + IAI46_24755 0.10 -2.3 5,283,963 - IAI46_24755 0.10 -0.7 5,283,963 - IAI46_24755 0.10 -1.0 5,283,964 + IAI46_24755 0.11 -2.0 5,283,965 - IAI46_24755 0.11 -1.0 5,283,987 + IAI46_24755 0.12 -0.2 5,284,001 + IAI46_24755 0.14 -1.0 5,284,007 - IAI46_24755 0.14 -0.4 5,284,024 + IAI46_24755 0.15 -0.8 5,284,085 - IAI46_24755 0.20 -0.7 5,284,085 - IAI46_24755 0.20 -0.2 5,284,100 + IAI46_24755 0.22 +0.6 5,284,100 + IAI46_24755 0.22 -0.4 5,284,101 - IAI46_24755 0.22 +0.0 5,284,108 + IAI46_24755 0.22 +0.3 5,284,121 + IAI46_24755 0.23 -0.3 5,284,121 + IAI46_24755 0.23 -0.4 5,284,121 + IAI46_24755 0.23 +0.0 5,284,121 + IAI46_24755 0.23 -0.4 5,284,121 + IAI46_24755 0.23 -0.8 5,284,122 - IAI46_24755 0.23 +0.3 5,284,122 - IAI46_24755 0.23 -0.8 5,284,122 - IAI46_24755 0.23 -0.2 5,284,122 - IAI46_24755 0.23 +0.5 5,284,122 - IAI46_24755 0.23 -1.3 5,284,177 - IAI46_24755 0.28 -1.2 5,284,207 + IAI46_24755 0.30 +0.0 5,284,207 + IAI46_24755 0.30 +0.0 5,284,257 - IAI46_24755 0.34 -0.7 5,284,288 - IAI46_24755 0.37 -1.1 5,284,295 - IAI46_24755 0.37 -0.6 5,284,309 + IAI46_24755 0.38 -0.2 5,284,323 - IAI46_24755 0.40 -0.2 5,284,382 + IAI46_24755 0.44 -0.4 5,284,397 + IAI46_24755 0.46 +0.4 5,284,397 + IAI46_24755 0.46 -1.2 5,284,398 - IAI46_24755 0.46 +0.0 5,284,399 + IAI46_24755 0.46 +1.0 5,284,399 + IAI46_24755 0.46 +0.3 5,284,400 - IAI46_24755 0.46 +0.6 5,284,422 + IAI46_24755 0.48 -0.8 5,284,492 - IAI46_24755 0.53 -0.2 5,284,539 + IAI46_24755 0.57 -0.6 5,284,539 + IAI46_24755 0.57 -1.6 5,284,540 - IAI46_24755 0.57 +0.6 5,284,548 + IAI46_24755 0.58 +1.0 5,284,554 + IAI46_24755 0.58 +0.3 5,284,583 - IAI46_24755 0.61 -0.2 5,284,583 - IAI46_24755 0.61 -1.8 5,284,604 - IAI46_24755 0.62 -1.0 5,284,664 - IAI46_24755 0.67 +0.7 5,284,686 + IAI46_24755 0.69 +1.6 5,284,759 + IAI46_24755 0.75 -1.7 5,284,759 + IAI46_24755 0.75 -1.1 5,284,759 + IAI46_24755 0.75 -1.2 5,284,760 - IAI46_24755 0.75 -1.5 5,284,761 + IAI46_24755 0.75 -0.2 5,284,761 + IAI46_24755 0.75 +1.5 5,284,761 + IAI46_24755 0.75 -1.3 5,284,784 + IAI46_24755 0.77 +1.5 5,284,785 - IAI46_24755 0.77 -1.0 5,284,791 + IAI46_24755 0.77 -0.2 5,284,791 + IAI46_24755 0.77 -1.2 5,284,792 - IAI46_24755 0.77 -0.4 5,284,792 - IAI46_24755 0.77 +0.2 5,284,799 + IAI46_24755 0.78 -0.4 5,284,799 + IAI46_24755 0.78 +0.3 5,284,799 + IAI46_24755 0.78 -1.2 5,284,799 + IAI46_24755 0.78 -0.6 5,284,800 - IAI46_24755 0.78 -0.4 5,284,801 + IAI46_24755 0.78 -1.4 5,284,801 + IAI46_24755 0.78 -1.6 5,284,802 - IAI46_24755 0.78 -0.6 5,284,802 - IAI46_24755 0.78 +0.0 5,284,802 - IAI46_24755 0.78 +0.0 5,284,804 - IAI46_24755 0.78 -1.1
Or see this region's nucleotide sequence