Strain Fitness in Serratia liquefaciens MT49 around IAI46_24030

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_24025 and IAI46_24030 are separated by 46 nucleotidesIAI46_24030 and IAI46_24035 are separated by 68 nucleotidesIAI46_24035 and IAI46_24040 overlap by 14 nucleotides IAI46_24025: IAI46_24025 - sugar porter family MFS transporter, at 5,118,501 to 5,119,928 _24025 IAI46_24030: IAI46_24030 - TIM barrel protein, at 5,119,975 to 5,120,811 _24030 IAI46_24035: IAI46_24035 - iron export ABC transporter permease subunit FetB, at 5,120,880 to 5,121,653 _24035 IAI46_24040: IAI46_24040 - iron ABC transporter ATP-binding protein FetA, at 5,121,640 to 5,122,317 _24040 Position (kb) 5119 5120 5121Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5119.078 kb on + strand, within IAI46_24025at 5119.078 kb on + strand, within IAI46_24025at 5119.079 kb on - strand, within IAI46_24025at 5119.082 kb on + strand, within IAI46_24025at 5119.083 kb on - strand, within IAI46_24025at 5119.083 kb on - strand, within IAI46_24025at 5119.245 kb on + strand, within IAI46_24025at 5119.245 kb on + strand, within IAI46_24025at 5119.245 kb on + strand, within IAI46_24025at 5119.246 kb on - strand, within IAI46_24025at 5119.246 kb on - strand, within IAI46_24025at 5119.246 kb on - strand, within IAI46_24025at 5119.324 kb on + strand, within IAI46_24025at 5119.324 kb on + strand, within IAI46_24025at 5119.324 kb on + strand, within IAI46_24025at 5119.324 kb on + strand, within IAI46_24025at 5119.325 kb on - strand, within IAI46_24025at 5119.325 kb on - strand, within IAI46_24025at 5119.325 kb on - strand, within IAI46_24025at 5119.325 kb on - strand, within IAI46_24025at 5119.325 kb on - strand, within IAI46_24025at 5119.325 kb on - strand, within IAI46_24025at 5119.325 kb on - strand, within IAI46_24025at 5119.325 kb on - strand, within IAI46_24025at 5119.325 kb on - strand, within IAI46_24025at 5119.332 kb on + strand, within IAI46_24025at 5119.332 kb on + strand, within IAI46_24025at 5119.332 kb on + strand, within IAI46_24025at 5119.332 kb on + strand, within IAI46_24025at 5119.333 kb on - strand, within IAI46_24025at 5119.333 kb on - strand, within IAI46_24025at 5119.336 kb on - strand, within IAI46_24025at 5119.336 kb on - strand, within IAI46_24025at 5119.336 kb on - strand, within IAI46_24025at 5119.336 kb on - strand, within IAI46_24025at 5119.521 kb on + strand, within IAI46_24025at 5119.521 kb on + strand, within IAI46_24025at 5119.521 kb on + strand, within IAI46_24025at 5119.522 kb on - strand, within IAI46_24025at 5119.522 kb on - strand, within IAI46_24025at 5119.530 kb on + strand, within IAI46_24025at 5119.530 kb on + strand, within IAI46_24025at 5119.530 kb on + strand, within IAI46_24025at 5119.530 kb on + strand, within IAI46_24025at 5119.531 kb on - strand, within IAI46_24025at 5119.531 kb on - strand, within IAI46_24025at 5119.531 kb on - strand, within IAI46_24025at 5119.532 kb on + strand, within IAI46_24025at 5119.533 kb on - strand, within IAI46_24025at 5119.577 kb on + strand, within IAI46_24025at 5119.578 kb on - strand, within IAI46_24025at 5119.578 kb on - strand, within IAI46_24025at 5119.578 kb on - strand, within IAI46_24025at 5119.587 kb on + strand, within IAI46_24025at 5119.587 kb on + strand, within IAI46_24025at 5119.588 kb on - strand, within IAI46_24025at 5119.588 kb on - strand, within IAI46_24025at 5119.588 kb on - strand, within IAI46_24025at 5119.588 kb on - strand, within IAI46_24025at 5119.588 kb on - strand, within IAI46_24025at 5119.588 kb on - strand, within IAI46_24025at 5119.740 kb on + strand, within IAI46_24025at 5119.740 kb on + strand, within IAI46_24025at 5119.741 kb on - strand, within IAI46_24025at 5119.741 kb on - strand, within IAI46_24025at 5119.741 kb on - strand, within IAI46_24025at 5119.825 kb on - strandat 5119.826 kb on + strandat 5119.826 kb on + strandat 5119.826 kb on + strandat 5119.826 kb on + strandat 5119.826 kb on + strandat 5119.888 kb on - strandat 5119.909 kb on + strandat 5119.925 kb on - strandat 5119.926 kb on + strandat 5119.926 kb on + strandat 5119.926 kb on + strandat 5119.926 kb on + strandat 5119.927 kb on - strandat 5119.934 kb on + strandat 5119.934 kb on + strandat 5119.935 kb on - strandat 5119.938 kb on + strandat 5119.938 kb on + strandat 5119.948 kb on + strandat 5119.966 kb on + strandat 5119.966 kb on + strandat 5119.966 kb on + strandat 5119.966 kb on + strandat 5119.967 kb on - strandat 5119.967 kb on - strandat 5120.078 kb on + strand, within IAI46_24030at 5120.078 kb on + strand, within IAI46_24030at 5120.078 kb on + strand, within IAI46_24030at 5120.094 kb on + strand, within IAI46_24030at 5120.094 kb on + strand, within IAI46_24030at 5120.095 kb on - strand, within IAI46_24030at 5120.138 kb on + strand, within IAI46_24030at 5120.139 kb on - strand, within IAI46_24030at 5120.139 kb on - strand, within IAI46_24030at 5120.139 kb on - strand, within IAI46_24030at 5120.158 kb on + strand, within IAI46_24030at 5120.159 kb on - strand, within IAI46_24030at 5120.163 kb on + strand, within IAI46_24030at 5120.200 kb on - strand, within IAI46_24030at 5120.285 kb on + strand, within IAI46_24030at 5120.358 kb on + strand, within IAI46_24030at 5120.386 kb on + strand, within IAI46_24030at 5120.386 kb on + strand, within IAI46_24030at 5120.387 kb on - strand, within IAI46_24030at 5120.393 kb on + strand, within IAI46_24030at 5120.393 kb on + strand, within IAI46_24030at 5120.393 kb on + strand, within IAI46_24030at 5120.394 kb on - strand, within IAI46_24030at 5120.401 kb on + strand, within IAI46_24030at 5120.402 kb on - strand, within IAI46_24030at 5120.516 kb on - strand, within IAI46_24030at 5120.516 kb on - strand, within IAI46_24030at 5120.519 kb on + strand, within IAI46_24030at 5120.519 kb on + strand, within IAI46_24030at 5120.520 kb on - strand, within IAI46_24030at 5120.520 kb on - strand, within IAI46_24030at 5120.610 kb on + strand, within IAI46_24030at 5120.611 kb on - strand, within IAI46_24030at 5120.621 kb on + strand, within IAI46_24030at 5120.621 kb on + strand, within IAI46_24030at 5120.622 kb on - strand, within IAI46_24030at 5120.768 kb on + strandat 5120.768 kb on + strandat 5120.768 kb on + strandat 5120.768 kb on + strandat 5120.768 kb on + strandat 5120.769 kb on - strandat 5120.769 kb on - strandat 5120.769 kb on - strandat 5120.868 kb on - strandat 5120.920 kb on + strandat 5120.921 kb on - strandat 5120.921 kb on - strandat 5120.921 kb on - strandat 5120.996 kb on + strand, within IAI46_24035at 5120.996 kb on + strand, within IAI46_24035at 5120.996 kb on + strand, within IAI46_24035at 5120.997 kb on - strand, within IAI46_24035at 5121.009 kb on - strand, within IAI46_24035at 5121.102 kb on - strand, within IAI46_24035at 5121.123 kb on - strand, within IAI46_24035at 5121.229 kb on + strand, within IAI46_24035at 5121.229 kb on + strand, within IAI46_24035at 5121.229 kb on + strand, within IAI46_24035at 5121.229 kb on + strand, within IAI46_24035at 5121.229 kb on + strand, within IAI46_24035at 5121.230 kb on - strand, within IAI46_24035at 5121.230 kb on - strand, within IAI46_24035at 5121.230 kb on - strand, within IAI46_24035at 5121.230 kb on - strand, within IAI46_24035at 5121.230 kb on - strand, within IAI46_24035at 5121.230 kb on - strand, within IAI46_24035at 5121.322 kb on - strand, within IAI46_24035at 5121.339 kb on + strand, within IAI46_24035at 5121.339 kb on + strand, within IAI46_24035at 5121.365 kb on + strand, within IAI46_24035at 5121.365 kb on + strand, within IAI46_24035at 5121.377 kb on + strand, within IAI46_24035at 5121.377 kb on + strand, within IAI46_24035at 5121.378 kb on - strand, within IAI46_24035at 5121.378 kb on - strand, within IAI46_24035at 5121.378 kb on - strand, within IAI46_24035at 5121.378 kb on - strand, within IAI46_24035at 5121.393 kb on - strand, within IAI46_24035at 5121.394 kb on + strand, within IAI46_24035at 5121.394 kb on + strand, within IAI46_24035at 5121.394 kb on + strand, within IAI46_24035at 5121.395 kb on - strand, within IAI46_24035at 5121.395 kb on - strand, within IAI46_24035at 5121.395 kb on - strand, within IAI46_24035at 5121.398 kb on + strand, within IAI46_24035at 5121.399 kb on - strand, within IAI46_24035at 5121.418 kb on + strand, within IAI46_24035at 5121.419 kb on - strand, within IAI46_24035at 5121.419 kb on - strand, within IAI46_24035at 5121.419 kb on - strand, within IAI46_24035at 5121.419 kb on - strand, within IAI46_24035at 5121.429 kb on - strand, within IAI46_24035at 5121.429 kb on - strand, within IAI46_24035at 5121.437 kb on + strand, within IAI46_24035at 5121.437 kb on + strand, within IAI46_24035at 5121.438 kb on - strand, within IAI46_24035at 5121.438 kb on - strand, within IAI46_24035at 5121.438 kb on - strand, within IAI46_24035at 5121.471 kb on - strand, within IAI46_24035at 5121.471 kb on - strand, within IAI46_24035at 5121.471 kb on - strand, within IAI46_24035at 5121.471 kb on - strand, within IAI46_24035at 5121.474 kb on + strand, within IAI46_24035at 5121.474 kb on + strand, within IAI46_24035at 5121.475 kb on - strand, within IAI46_24035at 5121.475 kb on - strand, within IAI46_24035at 5121.475 kb on - strand, within IAI46_24035at 5121.487 kb on + strand, within IAI46_24035at 5121.545 kb on + strand, within IAI46_24035at 5121.545 kb on + strand, within IAI46_24035at 5121.545 kb on + strand, within IAI46_24035at 5121.545 kb on + strand, within IAI46_24035at 5121.546 kb on - strand, within IAI46_24035at 5121.576 kb on - strandat 5121.586 kb on - strandat 5121.596 kb on + strandat 5121.597 kb on - strandat 5121.606 kb on + strandat 5121.607 kb on - strandat 5121.641 kb on + strandat 5121.641 kb on + strandat 5121.642 kb on - strandat 5121.642 kb on - strandat 5121.693 kb on + strandat 5121.802 kb on - strand, within IAI46_24040at 5121.804 kb on + strand, within IAI46_24040at 5121.805 kb on - strand, within IAI46_24040at 5121.805 kb on - strand, within IAI46_24040

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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5,119,078 + IAI46_24025 0.40 +0.1
5,119,078 + IAI46_24025 0.40 +0.9
5,119,079 - IAI46_24025 0.40 +0.3
5,119,082 + IAI46_24025 0.41 -0.1
5,119,083 - IAI46_24025 0.41 -0.0
5,119,083 - IAI46_24025 0.41 -0.2
5,119,245 + IAI46_24025 0.52 +0.9
5,119,245 + IAI46_24025 0.52 +0.2
5,119,245 + IAI46_24025 0.52 -0.5
5,119,246 - IAI46_24025 0.52 +0.3
5,119,246 - IAI46_24025 0.52 +0.2
5,119,246 - IAI46_24025 0.52 +0.7
5,119,324 + IAI46_24025 0.58 +0.3
5,119,324 + IAI46_24025 0.58 +0.0
5,119,324 + IAI46_24025 0.58 +0.3
5,119,324 + IAI46_24025 0.58 +0.1
5,119,325 - IAI46_24025 0.58 +0.2
5,119,325 - IAI46_24025 0.58 -0.1
5,119,325 - IAI46_24025 0.58 -0.7
5,119,325 - IAI46_24025 0.58 +0.2
5,119,325 - IAI46_24025 0.58 +0.5
5,119,325 - IAI46_24025 0.58 +0.7
5,119,325 - IAI46_24025 0.58 +0.7
5,119,325 - IAI46_24025 0.58 -3.0
5,119,325 - IAI46_24025 0.58 +0.3
5,119,332 + IAI46_24025 0.58 +0.2
5,119,332 + IAI46_24025 0.58 +0.3
5,119,332 + IAI46_24025 0.58 -0.5
5,119,332 + IAI46_24025 0.58 +0.1
5,119,333 - IAI46_24025 0.58 +0.2
5,119,333 - IAI46_24025 0.58 -0.8
5,119,336 - IAI46_24025 0.58 +0.3
5,119,336 - IAI46_24025 0.58 -0.2
5,119,336 - IAI46_24025 0.58 -0.8
5,119,336 - IAI46_24025 0.58 +1.5
5,119,521 + IAI46_24025 0.71 -0.1
5,119,521 + IAI46_24025 0.71 +0.6
5,119,521 + IAI46_24025 0.71 +2.2
5,119,522 - IAI46_24025 0.71 +1.2
5,119,522 - IAI46_24025 0.71 +0.1
5,119,530 + IAI46_24025 0.72 +0.0
5,119,530 + IAI46_24025 0.72 -0.7
5,119,530 + IAI46_24025 0.72 -0.9
5,119,530 + IAI46_24025 0.72 +1.1
5,119,531 - IAI46_24025 0.72 +0.6
5,119,531 - IAI46_24025 0.72 +0.6
5,119,531 - IAI46_24025 0.72 -0.4
5,119,532 + IAI46_24025 0.72 -0.7
5,119,533 - IAI46_24025 0.72 +0.4
5,119,577 + IAI46_24025 0.75 -0.4
5,119,578 - IAI46_24025 0.75 +0.2
5,119,578 - IAI46_24025 0.75 +0.3
5,119,578 - IAI46_24025 0.75 -0.4
5,119,587 + IAI46_24025 0.76 +0.2
5,119,587 + IAI46_24025 0.76 -0.0
5,119,588 - IAI46_24025 0.76 +0.3
5,119,588 - IAI46_24025 0.76 +0.0
5,119,588 - IAI46_24025 0.76 -0.1
5,119,588 - IAI46_24025 0.76 +0.5
5,119,588 - IAI46_24025 0.76 +0.8
5,119,588 - IAI46_24025 0.76 +0.1
5,119,740 + IAI46_24025 0.87 -1.6
5,119,740 + IAI46_24025 0.87 +0.0
5,119,741 - IAI46_24025 0.87 +0.8
5,119,741 - IAI46_24025 0.87 +0.3
5,119,741 - IAI46_24025 0.87 +0.4
5,119,825 - +0.4
5,119,826 + -0.1
5,119,826 + -0.0
5,119,826 + +0.5
5,119,826 + -0.5
5,119,826 + +1.3
5,119,888 - +0.3
5,119,909 + +0.0
5,119,925 - +0.9
5,119,926 + +0.7
5,119,926 + +0.2
5,119,926 + -0.1
5,119,926 + -0.9
5,119,927 - +0.6
5,119,934 + +0.5
5,119,934 + +0.1
5,119,935 - -0.2
5,119,938 + +0.4
5,119,938 + +1.2
5,119,948 + -0.7
5,119,966 + +0.1
5,119,966 + +0.7
5,119,966 + -0.4
5,119,966 + -0.8
5,119,967 - -0.8
5,119,967 - -1.1
5,120,078 + IAI46_24030 0.12 -0.0
5,120,078 + IAI46_24030 0.12 -0.5
5,120,078 + IAI46_24030 0.12 -1.7
5,120,094 + IAI46_24030 0.14 +1.2
5,120,094 + IAI46_24030 0.14 +0.5
5,120,095 - IAI46_24030 0.14 -0.1
5,120,138 + IAI46_24030 0.19 -0.9
5,120,139 - IAI46_24030 0.20 -0.5
5,120,139 - IAI46_24030 0.20 +0.5
5,120,139 - IAI46_24030 0.20 -0.8
5,120,158 + IAI46_24030 0.22 -0.1
5,120,159 - IAI46_24030 0.22 +0.8
5,120,163 + IAI46_24030 0.22 +0.1
5,120,200 - IAI46_24030 0.27 +0.0
5,120,285 + IAI46_24030 0.37 +0.2
5,120,358 + IAI46_24030 0.46 -0.3
5,120,386 + IAI46_24030 0.49 +0.8
5,120,386 + IAI46_24030 0.49 -0.7
5,120,387 - IAI46_24030 0.49 -0.7
5,120,393 + IAI46_24030 0.50 +0.3
5,120,393 + IAI46_24030 0.50 -0.4
5,120,393 + IAI46_24030 0.50 +0.8
5,120,394 - IAI46_24030 0.50 +0.4
5,120,401 + IAI46_24030 0.51 -0.5
5,120,402 - IAI46_24030 0.51 +0.6
5,120,516 - IAI46_24030 0.65 +1.1
5,120,516 - IAI46_24030 0.65 +0.4
5,120,519 + IAI46_24030 0.65 +0.8
5,120,519 + IAI46_24030 0.65 -0.7
5,120,520 - IAI46_24030 0.65 +0.3
5,120,520 - IAI46_24030 0.65 +0.3
5,120,610 + IAI46_24030 0.76 -0.3
5,120,611 - IAI46_24030 0.76 +0.1
5,120,621 + IAI46_24030 0.77 +0.4
5,120,621 + IAI46_24030 0.77 -0.1
5,120,622 - IAI46_24030 0.77 -0.2
5,120,768 + +0.5
5,120,768 + +0.4
5,120,768 + +0.2
5,120,768 + +1.0
5,120,768 + -2.7
5,120,769 - -0.0
5,120,769 - +0.4
5,120,769 - -0.1
5,120,868 - +1.0
5,120,920 + -1.7
5,120,921 - +0.8
5,120,921 - +1.4
5,120,921 - +0.6
5,120,996 + IAI46_24035 0.15 -0.5
5,120,996 + IAI46_24035 0.15 +0.7
5,120,996 + IAI46_24035 0.15 +1.7
5,120,997 - IAI46_24035 0.15 +0.5
5,121,009 - IAI46_24035 0.17 +0.0
5,121,102 - IAI46_24035 0.29 +1.0
5,121,123 - IAI46_24035 0.31 +0.1
5,121,229 + IAI46_24035 0.45 +0.9
5,121,229 + IAI46_24035 0.45 +0.6
5,121,229 + IAI46_24035 0.45 -0.3
5,121,229 + IAI46_24035 0.45 +0.5
5,121,229 + IAI46_24035 0.45 +0.4
5,121,230 - IAI46_24035 0.45 -0.5
5,121,230 - IAI46_24035 0.45 -0.5
5,121,230 - IAI46_24035 0.45 -0.8
5,121,230 - IAI46_24035 0.45 -0.2
5,121,230 - IAI46_24035 0.45 +0.7
5,121,230 - IAI46_24035 0.45 -1.2
5,121,322 - IAI46_24035 0.57 +0.2
5,121,339 + IAI46_24035 0.59 -0.5
5,121,339 + IAI46_24035 0.59 +0.4
5,121,365 + IAI46_24035 0.63 +1.3
5,121,365 + IAI46_24035 0.63 -0.3
5,121,377 + IAI46_24035 0.64 +0.1
5,121,377 + IAI46_24035 0.64 -0.4
5,121,378 - IAI46_24035 0.64 +0.6
5,121,378 - IAI46_24035 0.64 +0.5
5,121,378 - IAI46_24035 0.64 +0.5
5,121,378 - IAI46_24035 0.64 -0.0
5,121,393 - IAI46_24035 0.66 +0.2
5,121,394 + IAI46_24035 0.66 -0.5
5,121,394 + IAI46_24035 0.66 +0.2
5,121,394 + IAI46_24035 0.66 -0.2
5,121,395 - IAI46_24035 0.67 +0.1
5,121,395 - IAI46_24035 0.67 -0.4
5,121,395 - IAI46_24035 0.67 -0.4
5,121,398 + IAI46_24035 0.67 +0.6
5,121,399 - IAI46_24035 0.67 +0.7
5,121,418 + IAI46_24035 0.70 -0.2
5,121,419 - IAI46_24035 0.70 +0.2
5,121,419 - IAI46_24035 0.70 +0.9
5,121,419 - IAI46_24035 0.70 -0.2
5,121,419 - IAI46_24035 0.70 +0.6
5,121,429 - IAI46_24035 0.71 -0.0
5,121,429 - IAI46_24035 0.71 -0.0
5,121,437 + IAI46_24035 0.72 +1.0
5,121,437 + IAI46_24035 0.72 +0.9
5,121,438 - IAI46_24035 0.72 -0.3
5,121,438 - IAI46_24035 0.72 +0.1
5,121,438 - IAI46_24035 0.72 -0.3
5,121,471 - IAI46_24035 0.76 +1.0
5,121,471 - IAI46_24035 0.76 -0.1
5,121,471 - IAI46_24035 0.76 +0.3
5,121,471 - IAI46_24035 0.76 -1.6
5,121,474 + IAI46_24035 0.77 -0.2
5,121,474 + IAI46_24035 0.77 +1.4
5,121,475 - IAI46_24035 0.77 -0.5
5,121,475 - IAI46_24035 0.77 +0.4
5,121,475 - IAI46_24035 0.77 -0.1
5,121,487 + IAI46_24035 0.78 +0.2
5,121,545 + IAI46_24035 0.86 +0.6
5,121,545 + IAI46_24035 0.86 -0.8
5,121,545 + IAI46_24035 0.86 -0.6
5,121,545 + IAI46_24035 0.86 +0.3
5,121,546 - IAI46_24035 0.86 +0.0
5,121,576 - -0.4
5,121,586 - +0.1
5,121,596 + -0.7
5,121,597 - -0.0
5,121,606 + -0.5
5,121,607 - +1.2
5,121,641 + +0.4
5,121,641 + +0.0
5,121,642 - +0.9
5,121,642 - -0.0
5,121,693 + +0.3
5,121,802 - IAI46_24040 0.24 +0.2
5,121,804 + IAI46_24040 0.24 +0.2
5,121,805 - IAI46_24040 0.24 +0.5
5,121,805 - IAI46_24040 0.24 -0.1

Or see this region's nucleotide sequence