Strain Fitness in Serratia liquefaciens MT49 around IAI46_21065

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_21060 and IAI46_21065 are separated by 15 nucleotidesIAI46_21065 and IAI46_21070 are separated by 17 nucleotidesIAI46_21070 and IAI46_21075 overlap by 4 nucleotides IAI46_21060: IAI46_21060 - aldehyde dehydrogenase, at 4,460,471 to 4,461,940 _21060 IAI46_21065: IAI46_21065 - aspartate dehydrogenase, at 4,461,956 to 4,462,750 _21065 IAI46_21070: IAI46_21070 - SDR family oxidoreductase, at 4,462,768 to 4,463,562 _21070 IAI46_21075: IAI46_21075 - alpha/beta hydrolase, at 4,463,559 to 4,464,377 _21075 Position (kb) 4461 4462 4463Strain fitness (log2 ratio) -1 0 1 2at 4461.055 kb on - strand, within IAI46_21060at 4461.056 kb on + strand, within IAI46_21060at 4461.206 kb on - strand, within IAI46_21060at 4461.389 kb on + strand, within IAI46_21060at 4461.499 kb on + strand, within IAI46_21060at 4461.500 kb on - strand, within IAI46_21060at 4461.528 kb on + strand, within IAI46_21060at 4461.709 kb on + strand, within IAI46_21060at 4461.964 kb on + strandat 4462.066 kb on + strand, within IAI46_21065at 4462.066 kb on + strand, within IAI46_21065at 4462.067 kb on - strand, within IAI46_21065at 4462.109 kb on - strand, within IAI46_21065at 4462.294 kb on + strand, within IAI46_21065at 4462.321 kb on + strand, within IAI46_21065at 4462.333 kb on - strand, within IAI46_21065at 4462.333 kb on - strand, within IAI46_21065at 4462.819 kb on - strandat 4463.092 kb on - strand, within IAI46_21070at 4463.215 kb on + strand, within IAI46_21070at 4463.345 kb on - strand, within IAI46_21070at 4463.594 kb on - strandat 4463.624 kb on - strandat 4463.624 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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4,461,055 - IAI46_21060 0.40 +1.7
4,461,056 + IAI46_21060 0.40 -0.2
4,461,206 - IAI46_21060 0.50 +0.1
4,461,389 + IAI46_21060 0.62 -0.6
4,461,499 + IAI46_21060 0.70 +1.2
4,461,500 - IAI46_21060 0.70 +0.0
4,461,528 + IAI46_21060 0.72 +0.9
4,461,709 + IAI46_21060 0.84 -0.9
4,461,964 + -0.2
4,462,066 + IAI46_21065 0.14 +0.4
4,462,066 + IAI46_21065 0.14 -0.0
4,462,067 - IAI46_21065 0.14 +0.8
4,462,109 - IAI46_21065 0.19 +0.3
4,462,294 + IAI46_21065 0.43 +0.8
4,462,321 + IAI46_21065 0.46 -0.2
4,462,333 - IAI46_21065 0.47 +0.4
4,462,333 - IAI46_21065 0.47 +0.4
4,462,819 - +0.2
4,463,092 - IAI46_21070 0.41 +0.3
4,463,215 + IAI46_21070 0.56 +0.1
4,463,345 - IAI46_21070 0.73 -0.2
4,463,594 - +2.1
4,463,624 - -0.1
4,463,624 - +0.1

Or see this region's nucleotide sequence