Strain Fitness in Serratia liquefaciens MT49 around IAI46_20475

Experiment: copper (II) chloride 15 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_20465 and IAI46_20470 are separated by 173 nucleotidesIAI46_20470 and IAI46_20475 are separated by 180 nucleotidesIAI46_20475 and IAI46_20480 are separated by 33 nucleotides IAI46_20465: IAI46_20465 - TerC family protein, at 4,328,998 to 4,329,714 _20465 IAI46_20470: IAI46_20470 - YgdI/YgdR family lipoprotein, at 4,329,888 to 4,330,106 _20470 IAI46_20475: IAI46_20475 - NADP(H)-dependent aldo-keto reductase, at 4,330,287 to 4,331,327 _20475 IAI46_20480: IAI46_20480 - lysophospholipid transporter LplT, at 4,331,361 to 4,332,557 _20480 Position (kb) 4330 4331 4332Strain fitness (log2 ratio) -1 0 1at 4329.354 kb on + strand, within IAI46_20465at 4329.355 kb on - strand, within IAI46_20465at 4329.355 kb on - strand, within IAI46_20465at 4329.355 kb on - strand, within IAI46_20465at 4329.460 kb on - strand, within IAI46_20465at 4329.476 kb on + strand, within IAI46_20465at 4329.476 kb on + strand, within IAI46_20465at 4329.477 kb on - strand, within IAI46_20465at 4329.495 kb on + strand, within IAI46_20465at 4329.620 kb on + strand, within IAI46_20465at 4329.620 kb on + strand, within IAI46_20465at 4329.620 kb on + strand, within IAI46_20465at 4329.620 kb on + strand, within IAI46_20465at 4329.621 kb on - strand, within IAI46_20465at 4329.631 kb on + strand, within IAI46_20465at 4329.632 kb on - strand, within IAI46_20465at 4329.638 kb on - strand, within IAI46_20465at 4329.665 kb on + strandat 4329.735 kb on + strandat 4329.736 kb on - strandat 4329.753 kb on - strandat 4329.793 kb on + strandat 4329.793 kb on + strandat 4329.793 kb on + strandat 4329.801 kb on + strandat 4329.829 kb on + strandat 4329.829 kb on + strandat 4329.829 kb on + strandat 4329.829 kb on + strandat 4329.830 kb on - strandat 4329.830 kb on - strandat 4329.830 kb on - strandat 4329.830 kb on - strandat 4329.830 kb on - strandat 4329.839 kb on + strandat 4329.840 kb on - strandat 4329.866 kb on + strandat 4329.867 kb on - strandat 4329.870 kb on + strandat 4329.870 kb on + strandat 4329.870 kb on + strandat 4329.870 kb on + strandat 4329.871 kb on - strandat 4329.871 kb on - strandat 4329.871 kb on - strandat 4329.871 kb on - strandat 4329.871 kb on - strandat 4329.957 kb on + strand, within IAI46_20470at 4329.957 kb on + strand, within IAI46_20470at 4329.957 kb on + strand, within IAI46_20470at 4329.983 kb on + strand, within IAI46_20470at 4329.984 kb on - strand, within IAI46_20470at 4329.984 kb on - strand, within IAI46_20470at 4330.022 kb on + strand, within IAI46_20470at 4330.022 kb on + strand, within IAI46_20470at 4330.038 kb on + strand, within IAI46_20470at 4330.038 kb on + strand, within IAI46_20470at 4330.038 kb on + strand, within IAI46_20470at 4330.039 kb on - strand, within IAI46_20470at 4330.039 kb on - strand, within IAI46_20470at 4330.039 kb on - strand, within IAI46_20470at 4330.040 kb on + strand, within IAI46_20470at 4330.040 kb on + strand, within IAI46_20470at 4330.105 kb on - strandat 4330.105 kb on - strandat 4330.189 kb on - strandat 4330.190 kb on + strandat 4330.190 kb on + strandat 4330.191 kb on - strandat 4330.249 kb on + strandat 4330.249 kb on + strandat 4330.249 kb on + strandat 4330.249 kb on + strandat 4330.249 kb on + strandat 4330.249 kb on + strandat 4330.250 kb on - strandat 4330.250 kb on - strandat 4330.250 kb on - strandat 4330.250 kb on - strandat 4330.250 kb on - strandat 4330.318 kb on + strandat 4330.398 kb on + strand, within IAI46_20475at 4330.443 kb on + strand, within IAI46_20475at 4330.671 kb on + strand, within IAI46_20475at 4330.713 kb on - strand, within IAI46_20475at 4330.722 kb on + strand, within IAI46_20475at 4330.723 kb on - strand, within IAI46_20475at 4330.728 kb on + strand, within IAI46_20475at 4330.728 kb on + strand, within IAI46_20475at 4330.729 kb on - strand, within IAI46_20475at 4330.809 kb on + strand, within IAI46_20475at 4330.811 kb on + strand, within IAI46_20475at 4330.852 kb on - strand, within IAI46_20475at 4330.909 kb on - strand, within IAI46_20475at 4330.918 kb on + strand, within IAI46_20475at 4330.979 kb on - strand, within IAI46_20475at 4330.983 kb on + strand, within IAI46_20475at 4330.984 kb on - strand, within IAI46_20475at 4331.020 kb on - strand, within IAI46_20475at 4331.054 kb on + strand, within IAI46_20475at 4331.055 kb on - strand, within IAI46_20475at 4331.055 kb on - strand, within IAI46_20475at 4331.063 kb on + strand, within IAI46_20475at 4331.072 kb on + strand, within IAI46_20475at 4331.072 kb on + strand, within IAI46_20475at 4331.072 kb on + strand, within IAI46_20475at 4331.115 kb on + strand, within IAI46_20475at 4331.115 kb on + strand, within IAI46_20475at 4331.116 kb on - strand, within IAI46_20475at 4331.116 kb on - strand, within IAI46_20475at 4331.198 kb on + strand, within IAI46_20475at 4331.199 kb on - strand, within IAI46_20475at 4331.329 kb on + strandat 4331.330 kb on - strandat 4331.632 kb on + strand, within IAI46_20480at 4331.640 kb on - strand, within IAI46_20480at 4331.649 kb on - strand, within IAI46_20480at 4331.703 kb on - strand, within IAI46_20480at 4331.885 kb on + strand, within IAI46_20480at 4331.885 kb on + strand, within IAI46_20480at 4332.008 kb on + strand, within IAI46_20480at 4332.009 kb on - strand, within IAI46_20480at 4332.009 kb on - strand, within IAI46_20480at 4332.009 kb on - strand, within IAI46_20480at 4332.051 kb on + strand, within IAI46_20480at 4332.051 kb on + strand, within IAI46_20480at 4332.126 kb on - strand, within IAI46_20480at 4332.197 kb on - strand, within IAI46_20480at 4332.211 kb on + strand, within IAI46_20480at 4332.211 kb on + strand, within IAI46_20480at 4332.211 kb on + strand, within IAI46_20480at 4332.212 kb on - strand, within IAI46_20480at 4332.239 kb on + strand, within IAI46_20480at 4332.240 kb on - strand, within IAI46_20480

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
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4,329,354 + IAI46_20465 0.50 +1.1
4,329,355 - IAI46_20465 0.50 +0.6
4,329,355 - IAI46_20465 0.50 +1.1
4,329,355 - IAI46_20465 0.50 +0.6
4,329,460 - IAI46_20465 0.64 +0.2
4,329,476 + IAI46_20465 0.67 +0.6
4,329,476 + IAI46_20465 0.67 -0.4
4,329,477 - IAI46_20465 0.67 +0.9
4,329,495 + IAI46_20465 0.69 +1.3
4,329,620 + IAI46_20465 0.87 -0.5
4,329,620 + IAI46_20465 0.87 +0.5
4,329,620 + IAI46_20465 0.87 -0.1
4,329,620 + IAI46_20465 0.87 -0.1
4,329,621 - IAI46_20465 0.87 -0.3
4,329,631 + IAI46_20465 0.88 +0.8
4,329,632 - IAI46_20465 0.88 +0.9
4,329,638 - IAI46_20465 0.89 +0.2
4,329,665 + -0.3
4,329,735 + -0.2
4,329,736 - -0.1
4,329,753 - +0.9
4,329,793 + +1.2
4,329,793 + -0.0
4,329,793 + -0.4
4,329,801 + -0.3
4,329,829 + +0.9
4,329,829 + -0.5
4,329,829 + +0.5
4,329,829 + +0.5
4,329,830 - +0.1
4,329,830 - -0.3
4,329,830 - -0.5
4,329,830 - +1.3
4,329,830 - +1.1
4,329,839 + -0.5
4,329,840 - +0.3
4,329,866 + +0.1
4,329,867 - +0.2
4,329,870 + +0.4
4,329,870 + +0.4
4,329,870 + +0.7
4,329,870 + -0.5
4,329,871 - +0.0
4,329,871 - +0.9
4,329,871 - +0.4
4,329,871 - -0.3
4,329,871 - +0.6
4,329,957 + IAI46_20470 0.32 +0.7
4,329,957 + IAI46_20470 0.32 +0.6
4,329,957 + IAI46_20470 0.32 +1.2
4,329,983 + IAI46_20470 0.43 +0.1
4,329,984 - IAI46_20470 0.44 +0.4
4,329,984 - IAI46_20470 0.44 -1.0
4,330,022 + IAI46_20470 0.61 -1.3
4,330,022 + IAI46_20470 0.61 -0.2
4,330,038 + IAI46_20470 0.68 +0.2
4,330,038 + IAI46_20470 0.68 -0.2
4,330,038 + IAI46_20470 0.68 +0.6
4,330,039 - IAI46_20470 0.69 +1.4
4,330,039 - IAI46_20470 0.69 +0.4
4,330,039 - IAI46_20470 0.69 -0.7
4,330,040 + IAI46_20470 0.69 +0.3
4,330,040 + IAI46_20470 0.69 -0.6
4,330,105 - +0.3
4,330,105 - -0.4
4,330,189 - +0.8
4,330,190 + +0.6
4,330,190 + +0.5
4,330,191 - +0.1
4,330,249 + +0.6
4,330,249 + -0.1
4,330,249 + +0.1
4,330,249 + +0.7
4,330,249 + -0.4
4,330,249 + +1.2
4,330,250 - -0.6
4,330,250 - -0.3
4,330,250 - +0.2
4,330,250 - +0.8
4,330,250 - +0.3
4,330,318 + +0.3
4,330,398 + IAI46_20475 0.11 +0.9
4,330,443 + IAI46_20475 0.15 +0.1
4,330,671 + IAI46_20475 0.37 +0.5
4,330,713 - IAI46_20475 0.41 +0.1
4,330,722 + IAI46_20475 0.42 -0.4
4,330,723 - IAI46_20475 0.42 +0.3
4,330,728 + IAI46_20475 0.42 +0.0
4,330,728 + IAI46_20475 0.42 +0.5
4,330,729 - IAI46_20475 0.42 +0.4
4,330,809 + IAI46_20475 0.50 +0.3
4,330,811 + IAI46_20475 0.50 +1.7
4,330,852 - IAI46_20475 0.54 +0.7
4,330,909 - IAI46_20475 0.60 -0.5
4,330,918 + IAI46_20475 0.61 +0.1
4,330,979 - IAI46_20475 0.66 +0.3
4,330,983 + IAI46_20475 0.67 +0.0
4,330,984 - IAI46_20475 0.67 -0.0
4,331,020 - IAI46_20475 0.70 -0.2
4,331,054 + IAI46_20475 0.74 -1.1
4,331,055 - IAI46_20475 0.74 +0.6
4,331,055 - IAI46_20475 0.74 +0.3
4,331,063 + IAI46_20475 0.75 +1.2
4,331,072 + IAI46_20475 0.75 +0.1
4,331,072 + IAI46_20475 0.75 -0.3
4,331,072 + IAI46_20475 0.75 -1.0
4,331,115 + IAI46_20475 0.80 -0.3
4,331,115 + IAI46_20475 0.80 +0.7
4,331,116 - IAI46_20475 0.80 +0.6
4,331,116 - IAI46_20475 0.80 -0.0
4,331,198 + IAI46_20475 0.88 +0.1
4,331,199 - IAI46_20475 0.88 -0.0
4,331,329 + +0.8
4,331,330 - +0.2
4,331,632 + IAI46_20480 0.23 +0.3
4,331,640 - IAI46_20480 0.23 -1.0
4,331,649 - IAI46_20480 0.24 +0.1
4,331,703 - IAI46_20480 0.29 +1.1
4,331,885 + IAI46_20480 0.44 -0.6
4,331,885 + IAI46_20480 0.44 +0.1
4,332,008 + IAI46_20480 0.54 -0.2
4,332,009 - IAI46_20480 0.54 -0.4
4,332,009 - IAI46_20480 0.54 +0.2
4,332,009 - IAI46_20480 0.54 +0.3
4,332,051 + IAI46_20480 0.58 +0.2
4,332,051 + IAI46_20480 0.58 +0.2
4,332,126 - IAI46_20480 0.64 -0.1
4,332,197 - IAI46_20480 0.70 -0.6
4,332,211 + IAI46_20480 0.71 +0.4
4,332,211 + IAI46_20480 0.71 +0.4
4,332,211 + IAI46_20480 0.71 +0.9
4,332,212 - IAI46_20480 0.71 -0.2
4,332,239 + IAI46_20480 0.73 +0.7
4,332,240 - IAI46_20480 0.73 -0.6

Or see this region's nucleotide sequence