Strain Fitness in Serratia liquefaciens MT49 around IAI46_20340

Experiment: copper (II) chloride 15 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_20330 and IAI46_20335 overlap by 8 nucleotidesIAI46_20335 and IAI46_20340 are separated by 52 nucleotidesIAI46_20340 and IAI46_20345 are separated by 383 nucleotidesIAI46_20345 and IAI46_20350 are separated by 195 nucleotides IAI46_20330: IAI46_20330 - 23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM, at 4,296,463 to 4,297,566 _20330 IAI46_20335: IAI46_20335 - DUF423 domain-containing protein, at 4,297,559 to 4,297,954 _20335 IAI46_20340: IAI46_20340 - transcriptional regulator GcvA, at 4,298,007 to 4,298,924 _20340 IAI46_20345: IAI46_20345 - YgdI/YgdR family lipoprotein, at 4,299,308 to 4,299,532 _20345 IAI46_20350: IAI46_20350 - cysteine desulfurase CsdA, at 4,299,728 to 4,300,933 _20350 Position (kb) 4298 4299Strain fitness (log2 ratio) -1 0 1at 4297.051 kb on - strand, within IAI46_20330at 4297.052 kb on + strand, within IAI46_20330at 4297.052 kb on + strand, within IAI46_20330at 4297.053 kb on - strand, within IAI46_20330at 4297.053 kb on - strand, within IAI46_20330at 4297.083 kb on - strand, within IAI46_20330at 4297.091 kb on + strand, within IAI46_20330at 4297.092 kb on - strand, within IAI46_20330at 4297.092 kb on - strand, within IAI46_20330at 4297.092 kb on - strand, within IAI46_20330at 4297.252 kb on + strand, within IAI46_20330at 4297.427 kb on + strand, within IAI46_20330at 4297.445 kb on + strand, within IAI46_20330at 4297.446 kb on - strand, within IAI46_20330at 4297.561 kb on - strandat 4297.656 kb on + strand, within IAI46_20335at 4297.656 kb on + strand, within IAI46_20335at 4297.656 kb on + strand, within IAI46_20335at 4297.656 kb on + strand, within IAI46_20335at 4297.656 kb on + strand, within IAI46_20335at 4297.657 kb on - strand, within IAI46_20335at 4297.712 kb on + strand, within IAI46_20335at 4297.712 kb on + strand, within IAI46_20335at 4297.713 kb on - strand, within IAI46_20335at 4297.746 kb on + strand, within IAI46_20335at 4297.747 kb on - strand, within IAI46_20335at 4297.871 kb on + strand, within IAI46_20335at 4297.872 kb on - strand, within IAI46_20335at 4297.872 kb on - strand, within IAI46_20335at 4297.874 kb on + strand, within IAI46_20335at 4297.874 kb on + strand, within IAI46_20335at 4297.875 kb on - strand, within IAI46_20335at 4297.907 kb on + strand, within IAI46_20335at 4297.907 kb on + strand, within IAI46_20335at 4297.959 kb on - strandat 4297.959 kb on - strandat 4297.962 kb on + strandat 4297.963 kb on - strandat 4297.963 kb on - strandat 4297.963 kb on - strandat 4298.082 kb on + strandat 4298.116 kb on - strand, within IAI46_20340at 4298.116 kb on - strand, within IAI46_20340at 4298.116 kb on - strand, within IAI46_20340at 4298.205 kb on - strand, within IAI46_20340at 4298.283 kb on + strand, within IAI46_20340at 4298.284 kb on - strand, within IAI46_20340at 4298.318 kb on - strand, within IAI46_20340at 4298.342 kb on + strand, within IAI46_20340at 4298.435 kb on - strand, within IAI46_20340at 4298.446 kb on - strand, within IAI46_20340at 4298.719 kb on + strand, within IAI46_20340at 4298.856 kb on - strandat 4298.910 kb on + strandat 4298.910 kb on + strandat 4298.910 kb on + strandat 4298.930 kb on - strandat 4298.933 kb on + strandat 4298.934 kb on - strandat 4298.944 kb on - strandat 4298.946 kb on + strandat 4298.949 kb on + strandat 4298.950 kb on - strandat 4299.029 kb on - strandat 4299.082 kb on + strandat 4299.083 kb on - strandat 4299.083 kb on - strandat 4299.083 kb on - strandat 4299.083 kb on - strandat 4299.086 kb on + strandat 4299.086 kb on + strandat 4299.086 kb on + strandat 4299.086 kb on + strandat 4299.086 kb on + strandat 4299.086 kb on + strandat 4299.086 kb on + strandat 4299.087 kb on - strandat 4299.087 kb on - strandat 4299.087 kb on - strandat 4299.087 kb on - strandat 4299.087 kb on - strandat 4299.087 kb on - strandat 4299.087 kb on - strandat 4299.087 kb on - strandat 4299.206 kb on - strandat 4299.209 kb on + strandat 4299.209 kb on + strandat 4299.209 kb on + strandat 4299.209 kb on + strandat 4299.210 kb on - strandat 4299.210 kb on - strandat 4299.240 kb on + strandat 4299.241 kb on - strandat 4299.241 kb on - strandat 4299.379 kb on + strand, within IAI46_20345at 4299.379 kb on + strand, within IAI46_20345at 4299.381 kb on + strand, within IAI46_20345at 4299.381 kb on + strand, within IAI46_20345at 4299.381 kb on + strand, within IAI46_20345at 4299.382 kb on - strand, within IAI46_20345at 4299.433 kb on + strand, within IAI46_20345at 4299.433 kb on + strand, within IAI46_20345at 4299.434 kb on - strand, within IAI46_20345at 4299.434 kb on - strand, within IAI46_20345at 4299.434 kb on - strand, within IAI46_20345at 4299.463 kb on - strand, within IAI46_20345at 4299.463 kb on - strand, within IAI46_20345at 4299.493 kb on + strand, within IAI46_20345at 4299.494 kb on - strand, within IAI46_20345at 4299.494 kb on - strand, within IAI46_20345at 4299.512 kb on - strandat 4299.512 kb on - strandat 4299.576 kb on - strandat 4299.609 kb on + strandat 4299.651 kb on - strandat 4299.651 kb on - strandat 4299.662 kb on + strandat 4299.662 kb on + strandat 4299.662 kb on + strandat 4299.663 kb on - strandat 4299.663 kb on - strandat 4299.663 kb on - strandat 4299.684 kb on + strandat 4299.685 kb on - strandat 4299.727 kb on + strandat 4299.728 kb on - strandat 4299.792 kb on - strandat 4299.817 kb on - strandat 4299.817 kb on - strandat 4299.884 kb on - strand, within IAI46_20350at 4299.892 kb on + strand, within IAI46_20350

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic
remove
4,297,051 - IAI46_20330 0.53 +0.5
4,297,052 + IAI46_20330 0.53 -0.2
4,297,052 + IAI46_20330 0.53 +0.2
4,297,053 - IAI46_20330 0.53 -0.5
4,297,053 - IAI46_20330 0.53 +0.1
4,297,083 - IAI46_20330 0.56 +0.1
4,297,091 + IAI46_20330 0.57 +0.1
4,297,092 - IAI46_20330 0.57 -0.6
4,297,092 - IAI46_20330 0.57 -0.7
4,297,092 - IAI46_20330 0.57 +0.6
4,297,252 + IAI46_20330 0.71 +0.5
4,297,427 + IAI46_20330 0.87 -0.2
4,297,445 + IAI46_20330 0.89 -0.9
4,297,446 - IAI46_20330 0.89 -1.0
4,297,561 - -0.2
4,297,656 + IAI46_20335 0.24 -0.3
4,297,656 + IAI46_20335 0.24 -0.3
4,297,656 + IAI46_20335 0.24 +0.4
4,297,656 + IAI46_20335 0.24 +0.5
4,297,656 + IAI46_20335 0.24 +0.7
4,297,657 - IAI46_20335 0.25 -0.9
4,297,712 + IAI46_20335 0.39 +0.0
4,297,712 + IAI46_20335 0.39 +0.1
4,297,713 - IAI46_20335 0.39 -0.0
4,297,746 + IAI46_20335 0.47 +0.8
4,297,747 - IAI46_20335 0.47 -0.8
4,297,871 + IAI46_20335 0.79 -0.6
4,297,872 - IAI46_20335 0.79 +0.8
4,297,872 - IAI46_20335 0.79 +1.4
4,297,874 + IAI46_20335 0.80 +0.9
4,297,874 + IAI46_20335 0.80 -1.0
4,297,875 - IAI46_20335 0.80 +0.6
4,297,907 + IAI46_20335 0.88 -0.1
4,297,907 + IAI46_20335 0.88 +1.4
4,297,959 - -0.4
4,297,959 - +0.7
4,297,962 + -0.3
4,297,963 - +0.1
4,297,963 - +0.0
4,297,963 - +0.4
4,298,082 + +0.7
4,298,116 - IAI46_20340 0.12 -0.0
4,298,116 - IAI46_20340 0.12 +0.5
4,298,116 - IAI46_20340 0.12 +0.2
4,298,205 - IAI46_20340 0.22 +1.0
4,298,283 + IAI46_20340 0.30 -0.1
4,298,284 - IAI46_20340 0.30 +0.3
4,298,318 - IAI46_20340 0.34 +0.8
4,298,342 + IAI46_20340 0.36 -0.9
4,298,435 - IAI46_20340 0.47 -0.7
4,298,446 - IAI46_20340 0.48 -0.3
4,298,719 + IAI46_20340 0.78 +0.0
4,298,856 - -0.2
4,298,910 + +0.2
4,298,910 + -0.3
4,298,910 + -0.3
4,298,930 - +0.2
4,298,933 + +0.0
4,298,934 - +0.3
4,298,944 - +1.0
4,298,946 + -0.5
4,298,949 + -0.8
4,298,950 - -0.5
4,299,029 - -0.0
4,299,082 + +0.7
4,299,083 - +0.8
4,299,083 - +1.1
4,299,083 - -0.0
4,299,083 - +0.7
4,299,086 + -0.7
4,299,086 + +0.5
4,299,086 + +0.2
4,299,086 + +0.3
4,299,086 + -0.5
4,299,086 + +0.0
4,299,086 + +0.8
4,299,087 - -0.0
4,299,087 - -0.0
4,299,087 - +0.3
4,299,087 - +0.6
4,299,087 - -0.7
4,299,087 - +0.6
4,299,087 - +0.7
4,299,087 - +0.4
4,299,206 - +0.6
4,299,209 + +0.7
4,299,209 + -0.1
4,299,209 + -0.3
4,299,209 + -0.2
4,299,210 - -0.0
4,299,210 - -0.0
4,299,240 + +0.4
4,299,241 - -0.4
4,299,241 - -1.3
4,299,379 + IAI46_20345 0.32 +0.1
4,299,379 + IAI46_20345 0.32 +0.2
4,299,381 + IAI46_20345 0.32 -0.2
4,299,381 + IAI46_20345 0.32 +0.4
4,299,381 + IAI46_20345 0.32 +0.6
4,299,382 - IAI46_20345 0.33 +0.3
4,299,433 + IAI46_20345 0.56 +0.2
4,299,433 + IAI46_20345 0.56 +0.6
4,299,434 - IAI46_20345 0.56 -0.2
4,299,434 - IAI46_20345 0.56 +0.3
4,299,434 - IAI46_20345 0.56 -0.1
4,299,463 - IAI46_20345 0.69 -0.3
4,299,463 - IAI46_20345 0.69 +0.1
4,299,493 + IAI46_20345 0.82 -0.2
4,299,494 - IAI46_20345 0.83 +0.5
4,299,494 - IAI46_20345 0.83 -0.2
4,299,512 - -0.0
4,299,512 - +0.8
4,299,576 - +0.4
4,299,609 + -0.0
4,299,651 - -1.3
4,299,651 - -0.3
4,299,662 + -0.5
4,299,662 + -0.1
4,299,662 + -0.5
4,299,663 - -1.0
4,299,663 - +1.0
4,299,663 - -0.1
4,299,684 + +0.2
4,299,685 - -0.2
4,299,727 + +0.6
4,299,728 - -1.0
4,299,792 - +0.5
4,299,817 - -0.6
4,299,817 - +0.2
4,299,884 - IAI46_20350 0.13 -0.3
4,299,892 + IAI46_20350 0.14 +0.2

Or see this region's nucleotide sequence