Experiment: copper (II) chloride 15 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_17700 and IAI46_17705 are separated by 96 nucleotides IAI46_17705 and IAI46_17710 are separated by 23 nucleotides IAI46_17710 and IAI46_17715 are separated by 710 nucleotides
IAI46_17700: IAI46_17700 - NADH-quinone oxidoreductase subunit C/D, at 3,730,307 to 3,732,103
_17700
IAI46_17705: IAI46_17705 - NADH-quinone oxidoreductase subunit B, at 3,732,200 to 3,732,874
_17705
IAI46_17710: IAI46_17710 - NADH-quinone oxidoreductase subunit A, at 3,732,898 to 3,733,335
_17710
IAI46_17715: IAI46_17715 - transcriptional regulator LrhA, at 3,734,046 to 3,734,981
_17715
Position (kb)
3732
3733
3734 Strain fitness (log2 ratio)
-2
-1
0
1 at 3731.899 kb on - strand, within IAI46_17700 at 3731.899 kb on - strand, within IAI46_17700 at 3731.931 kb on - strand at 3731.940 kb on - strand at 3732.103 kb on + strand at 3732.122 kb on + strand at 3732.123 kb on - strand at 3732.169 kb on - strand at 3732.176 kb on + strand at 3732.176 kb on + strand at 3732.176 kb on + strand at 3732.202 kb on - strand at 3732.275 kb on - strand, within IAI46_17705 at 3732.286 kb on - strand, within IAI46_17705 at 3732.402 kb on + strand, within IAI46_17705 at 3732.402 kb on + strand, within IAI46_17705 at 3732.403 kb on - strand, within IAI46_17705 at 3732.403 kb on - strand, within IAI46_17705 at 3732.447 kb on + strand, within IAI46_17705 at 3732.448 kb on - strand, within IAI46_17705 at 3732.457 kb on - strand, within IAI46_17705 at 3732.608 kb on + strand, within IAI46_17705 at 3732.693 kb on + strand, within IAI46_17705 at 3732.704 kb on - strand, within IAI46_17705 at 3732.704 kb on - strand, within IAI46_17705 at 3732.763 kb on - strand, within IAI46_17705 at 3732.866 kb on - strand at 3732.866 kb on - strand at 3732.867 kb on + strand at 3732.878 kb on - strand at 3732.900 kb on - strand at 3732.995 kb on + strand, within IAI46_17710 at 3732.996 kb on - strand, within IAI46_17710 at 3733.013 kb on - strand, within IAI46_17710 at 3733.091 kb on + strand, within IAI46_17710 at 3733.092 kb on - strand, within IAI46_17710 at 3733.158 kb on + strand, within IAI46_17710 at 3733.256 kb on - strand, within IAI46_17710 at 3733.336 kb on - strand at 3733.336 kb on - strand at 3733.336 kb on - strand at 3733.340 kb on + strand at 3733.347 kb on - strand at 3733.393 kb on + strand at 3733.394 kb on - strand at 3733.411 kb on + strand at 3733.423 kb on - strand at 3733.427 kb on - strand at 3733.496 kb on + strand at 3733.529 kb on - strand at 3733.555 kb on + strand at 3733.585 kb on + strand at 3733.620 kb on + strand at 3733.621 kb on - strand at 3733.625 kb on - strand at 3733.693 kb on + strand at 3733.693 kb on + strand at 3733.820 kb on + strand at 3733.820 kb on + strand at 3733.820 kb on + strand at 3733.838 kb on - strand at 3734.047 kb on + strand at 3734.048 kb on - strand at 3734.191 kb on + strand, within IAI46_17715 at 3734.191 kb on + strand, within IAI46_17715 at 3734.191 kb on + strand, within IAI46_17715 at 3734.192 kb on - strand, within IAI46_17715 at 3734.198 kb on + strand, within IAI46_17715 at 3734.294 kb on + strand, within IAI46_17715 at 3734.295 kb on - strand, within IAI46_17715 at 3734.332 kb on + strand, within IAI46_17715 at 3734.333 kb on - strand, within IAI46_17715
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 15 uM, aerobic remove 3,731,899 - IAI46_17700 0.89 +0.6 3,731,899 - IAI46_17700 0.89 +0.0 3,731,931 - +1.0 3,731,940 - -1.1 3,732,103 + -0.9 3,732,122 + +0.1 3,732,123 - -0.1 3,732,169 - -0.2 3,732,176 + +0.9 3,732,176 + +1.1 3,732,176 + -0.8 3,732,202 - -0.4 3,732,275 - IAI46_17705 0.11 +0.5 3,732,286 - IAI46_17705 0.13 -0.5 3,732,402 + IAI46_17705 0.30 -1.1 3,732,402 + IAI46_17705 0.30 +0.0 3,732,403 - IAI46_17705 0.30 +0.9 3,732,403 - IAI46_17705 0.30 +0.1 3,732,447 + IAI46_17705 0.37 +1.7 3,732,448 - IAI46_17705 0.37 +0.7 3,732,457 - IAI46_17705 0.38 +0.8 3,732,608 + IAI46_17705 0.60 -2.5 3,732,693 + IAI46_17705 0.73 +0.7 3,732,704 - IAI46_17705 0.75 +0.8 3,732,704 - IAI46_17705 0.75 +0.3 3,732,763 - IAI46_17705 0.83 -0.8 3,732,866 - +0.1 3,732,866 - +0.4 3,732,867 + -0.1 3,732,878 - +1.1 3,732,900 - +0.1 3,732,995 + IAI46_17710 0.22 +0.7 3,732,996 - IAI46_17710 0.22 +0.9 3,733,013 - IAI46_17710 0.26 +0.1 3,733,091 + IAI46_17710 0.44 +0.4 3,733,092 - IAI46_17710 0.44 +1.1 3,733,158 + IAI46_17710 0.59 -0.3 3,733,256 - IAI46_17710 0.82 -0.1 3,733,336 - +0.4 3,733,336 - -0.1 3,733,336 - +0.1 3,733,340 + +0.6 3,733,347 - +0.2 3,733,393 + -0.5 3,733,394 - +0.6 3,733,411 + +0.6 3,733,423 - +1.2 3,733,427 - +1.7 3,733,496 + -1.5 3,733,529 - -0.6 3,733,555 + +0.9 3,733,585 + -0.1 3,733,620 + +0.5 3,733,621 - +0.8 3,733,625 - +0.3 3,733,693 + -0.3 3,733,693 + +1.1 3,733,820 + +1.0 3,733,820 + -0.4 3,733,820 + +0.2 3,733,838 - +0.1 3,734,047 + +0.9 3,734,048 - -0.1 3,734,191 + IAI46_17715 0.15 -2.3 3,734,191 + IAI46_17715 0.15 -1.9 3,734,191 + IAI46_17715 0.15 -0.8 3,734,192 - IAI46_17715 0.16 +0.7 3,734,198 + IAI46_17715 0.16 -0.7 3,734,294 + IAI46_17715 0.26 +0.5 3,734,295 - IAI46_17715 0.27 -1.1 3,734,332 + IAI46_17715 0.31 +0.0 3,734,333 - IAI46_17715 0.31 +0.1
Or see this region's nucleotide sequence